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root/OpenMD/trunk/src/nonbonded/Electrostatic.cpp
Revision 1981 - (view) (annotate) - [select for diffs]
Modified Mon Apr 14 18:32:51 2014 UTC (11 years ago) by gezelter
File length: 54498 byte(s)
Diff to previous 1974
Added the ConstraintWriter

Revision 1974 - (view) (annotate) - [select for diffs]
Modified Fri Mar 7 13:13:03 2014 UTC (11 years, 1 month ago) by gezelter
File length: 54496 byte(s)
Diff to previous 1973
sign error

Revision 1973 - (view) (annotate) - [select for diffs]
Modified Thu Mar 6 19:34:22 2014 UTC (11 years, 1 month ago) by gezelter
File length: 54497 byte(s)
Diff to previous 1969
Some updates for restraints and fluctuating charges in Ewald

Revision 1969 - (view) (annotate) - [select for diffs]
Modified Wed Feb 26 14:14:50 2014 UTC (11 years, 2 months ago) by gezelter
File length: 54370 byte(s)
Diff to previous 1938
Fixes to deal with deprecation of MPI C++ bindings.  We've reverted back to the
C calls.

Revision 1938 - (view) (annotate) - [select for diffs]
Modified Thu Oct 31 15:32:17 2013 UTC (11 years, 6 months ago) by gezelter
File length: 54099 byte(s)
Diff to previous 1934
Some MPI include re-ordering to work with the Intel MPI implementation.

Revision 1934 - (view) (annotate) - [select for diffs]
Modified Mon Aug 26 14:15:09 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54098 byte(s)
Diff to previous 1933
Added OH bond time correlation function

Revision 1933 - (view) (annotate) - [select for diffs]
Modified Fri Aug 23 15:59:23 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54097 byte(s)
Diff to previous 1932
Fixed a bug (I think) that was caused by a cross product name collision.

Revision 1932 - (view) (annotate) - [select for diffs]
Modified Wed Aug 21 16:52:56 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54099 byte(s)
Diff to previous 1931
Backed out some region nonsense

Revision 1931 - (view) (annotate) - [select for diffs]
Modified Mon Aug 19 19:20:32 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54730 byte(s)
Diff to previous 1929
fixed a sameRegion initialization issue

Revision 1929 - (view) (annotate) - [select for diffs]
Modified Mon Aug 19 13:12:00 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54301 byte(s)
Diff to previous 1928
Backing out fluc-rho and putting back the Electrostatic fluctuating
charge with coulomb integrals for atoms within a region.

Revision 1928 - (view) (annotate) - [select for diffs]
Modified Sat Aug 17 13:03:17 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54231 byte(s)
Diff to previous 1925
Fixed a few bugs in EAM and Electrostatic.

Revision 1925 - (view) (annotate) - [select for diffs]
Modified Wed Aug 7 15:24:16 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54231 byte(s)
Diff to previous 1924
More ewald fixes, reporting reciprocal potential in stats.

Revision 1924 - (view) (annotate) - [select for diffs]
Modified Mon Aug 5 21:46:11 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54574 byte(s)
Diff to previous 1923
Ewald fixes

Revision 1923 - (view) (annotate) - [select for diffs]
Modified Mon Aug 5 16:13:46 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54519 byte(s)
Diff to previous 1922
debugging Ewald implementation

Revision 1922 - (view) (annotate) - [select for diffs]
Modified Mon Aug 5 13:41:15 2013 UTC (11 years, 8 months ago) by gezelter
File length: 54531 byte(s)
Diff to previous 1921
Fixed a few ewald bugs

Revision 1921 - (view) (annotate) - [select for diffs]
Modified Thu Aug 1 18:23:07 2013 UTC (11 years, 9 months ago) by gezelter
File length: 54271 byte(s)
Diff to previous 1915
Fixed a few DumpWriter / FlucQ bugs.  Still working on Ewald, updated 
Quadrupolar test structures.

Revision 1915 - (view) (annotate) - [select for diffs]
Modified Mon Jul 29 17:55:17 2013 UTC (11 years, 9 months ago) by gezelter
File length: 54013 byte(s)
Diff to previous 1907
Added Legendre Correlation function (as a function of Z), working on architecture for Ewald
Fixed some bugs in FlucQ


Revision 1907 - (view) (annotate) - [select for diffs]
Modified Fri Jul 19 18:18:27 2013 UTC (11 years, 9 months ago) by gezelter
File length: 43082 byte(s)
Diff to previous 1900
Fixed self energies for the Taylor_shifted method

Revision 1900 - (view) (annotate) - [select for diffs]
Modified Fri Jul 12 17:38:06 2013 UTC (11 years, 9 months ago) by gezelter
File length: 43053 byte(s)
Diff to previous 1895
Added self-interaction for shifted multipoles

Revision 1895 - (view) (annotate) - [select for diffs]
Modified Mon Jul 1 21:09:37 2013 UTC (11 years, 10 months ago) by gezelter
File length: 42197 byte(s)
Diff to previous 1894
Speed!

Revision 1894 - (view) (annotate) - [select for diffs]
Modified Fri Jun 21 23:21:58 2013 UTC (11 years, 10 months ago) by gezelter
File length: 41583 byte(s)
Diff to previous 1893
Fixed Madan's problem with QQ interactions

Revision 1893 - (view) (annotate) - [select for diffs]
Modified Wed Jun 19 17:19:07 2013 UTC (11 years, 10 months ago) by gezelter
File length: 41580 byte(s)
Diff to previous 1879
Some performance improvements

Revision 1879 - (view) (annotate) - [select for diffs]
Modified Sun Jun 16 15:15:42 2013 UTC (11 years, 10 months ago) by gezelter
File length: 42712 byte(s)
Diff to previous 1782
MERGE OpenMD development 1783:1878 into trunk
Revision 1782 - (view) (annotate) - [select for diffs]
Modified Wed Aug 22 02:28:28 2012 UTC (12 years, 8 months ago) by gezelter
File length: 38907 byte(s)
Diff to previous 1767
MERGE OpenMD development branch 1465:1781 into trunk
Revision 1767 - (view) (annotate) - [select for diffs]
Modified Fri Jul 6 22:01:58 2012 UTC (12 years, 9 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38907 byte(s)
Diff to previous 1766
Various fixes required to compile OpenMD with the MS Visual C++ compiler

Revision 1766 - (view) (annotate) - [select for diffs]
Modified Thu Jul 5 17:08:25 2012 UTC (12 years, 9 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38883 byte(s)
Diff to previous 1761
Added Fluctuating Charge Langevin propagator, and made it the default
fixed some errors on the one-center slater coulomb integrals, and some
parameters in PhysicalConstants.


Revision 1761 - (view) (annotate) - [select for diffs]
Modified Fri Jun 22 20:01:37 2012 UTC (12 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38868 byte(s)
Diff to previous 1760
fixes for fluctuating charges

Revision 1760 - (view) (annotate) - [select for diffs]
Modified Thu Jun 21 19:26:46 2012 UTC (12 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38593 byte(s)
Diff to previous 1756
Some bugfixes (CholeskyDecomposition), more work on fluctuating charges,
migrating stats stuff into frameData

Revision 1756 - (view) (annotate) - [select for diffs]
Modified Mon Jun 18 18:23:20 2012 UTC (12 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38469 byte(s)
Diff to previous 1750
bugfixes for self interactions (particularly in parallel)

Revision 1750 - (view) (annotate) - [select for diffs]
Modified Thu Jun 7 12:53:46 2012 UTC (12 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38471 byte(s)
Diff to previous 1734
Fixing some bugs in optimization, fixing status functions so that they
dump correctly (although some things are deferred until the Stats is
accumulator-based).

Revision 1734 - (view) (annotate) - [select for diffs]
Modified Tue Jun 5 17:49:36 2012 UTC (12 years, 10 months ago) by jmichalk
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38450 byte(s)
Diff to previous 1723
Fixed the Slater overlap integral code, added dVdFq to the self interaction.

Revision 1723 - (view) (annotate) - [select for diffs]
Modified Thu May 24 20:59:54 2012 UTC (12 years, 11 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 38156 byte(s)
Diff to previous 1721
Bug fixes for heat flux import

Revision 1721 - (view) (annotate) - [select for diffs]
Modified Thu May 24 14:17:42 2012 UTC (12 years, 11 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 37322 byte(s)
Diff to previous 1720
Fixing some bugs

Revision 1720 - (view) (annotate) - [select for diffs]
Modified Thu May 24 01:48:29 2012 UTC (12 years, 11 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36140 byte(s)
Diff to previous 1718
Fixed a few bugs in that last commit

Revision 1718 - (view) (annotate) - [select for diffs]
Modified Thu May 24 01:29:59 2012 UTC (12 years, 11 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36016 byte(s)
Diff to previous 1710
Adding fluctuating charges, still a work in progress

Revision 1710 - (view) (annotate) - [select for diffs]
Modified Fri May 18 21:44:02 2012 UTC (12 years, 11 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 33878 byte(s)
Diff to previous 1668
Added an adapter layer between the AtomType and the rest of the code to 
handle the bolt-on capabilities of new types. 

Fixed a long-standing bug in how storageLayout was being set to the maximum
possible value.

Started to add infrastructure for Polarizable and fluc-Q calculations.

Revision 1668 - (view) (annotate) - [select for diffs]
Modified Fri Jan 6 19:03:05 2012 UTC (13 years, 3 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 37408 byte(s)
Diff to previous 1665
Some fixes for CMake and single precision builds

Revision 1665 - (view) (annotate) - [select for diffs]
Modified Tue Nov 22 20:38:56 2011 UTC (13 years, 5 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 37363 byte(s)
Diff to previous 1616
updated copyright notices

Revision 1616 - (view) (annotate) - [select for diffs]
Modified Tue Aug 30 15:45:35 2011 UTC (13 years, 8 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 37297 byte(s)
Diff to previous 1613
Fixing cutoff groups

Revision 1613 - (view) (annotate) - [select for diffs]
Modified Thu Aug 18 20:18:19 2011 UTC (13 years, 8 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36492 byte(s)
Diff to previous 1601
Fixed a parallel bug in computing exclude lists.
Added file versioning information in MD files.
Still tracking down cutoff group bugs.

Revision 1601 - (view) (annotate) - [select for diffs]
Modified Thu Aug 4 20:04:35 2011 UTC (13 years, 9 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36236 byte(s)
Diff to previous 1587
removed spurious prints, fixed one bug, but there's still a parallel problem

Revision 1587 - (view) (annotate) - [select for diffs]
Modified Fri Jul 8 20:25:32 2011 UTC (13 years, 9 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 39529 byte(s)
Diff to previous 1586
Fixes

Revision 1586 - (view) (annotate) - [select for diffs]
Modified Tue Jun 21 06:34:35 2011 UTC (13 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36957 byte(s)
Diff to previous 1584
bug fixes

Revision 1584 - (view) (annotate) - [select for diffs]
Modified Fri Jun 17 20:16:35 2011 UTC (13 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36886 byte(s)
Diff to previous 1582
bug fixes.

Revision 1582 - (view) (annotate) - [select for diffs]
Modified Tue Jun 14 20:41:44 2011 UTC (13 years, 10 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36867 byte(s)
Diff to previous 1571
Well, the potential energy values are still garbage, but the LJ sample
runs.

Revision 1571 - (view) (annotate) - [select for diffs]
Modified Fri May 27 16:45:44 2011 UTC (13 years, 11 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36857 byte(s)
Diff to previous 1554
Added Atypes to new C++ force decomposition.

Revision 1554 - (view) (annotate) - [select for diffs]
Modified Sat Apr 30 02:54:02 2011 UTC (14 years ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36861 byte(s)
Diff to previous 1549
For efficiency, pointers instead of objects will be passed during main
force loop. 


Revision 1549 - (view) (annotate) - [select for diffs]
Modified Wed Apr 27 18:38:15 2011 UTC (14 years ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36374 byte(s)
Diff to previous 1545
a few more tweaks   We're getting somewhat closer to deleting fortran.

Revision 1545 - (view) (annotate) - [select for diffs]
Modified Fri Apr 8 21:25:19 2011 UTC (14 years ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36401 byte(s)
Diff to previous 1536
still busted, but much progress

Revision 1536 - (view) (annotate) - [select for diffs]
Modified Wed Jan 5 14:49:05 2011 UTC (14 years, 3 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36421 byte(s)
Diff to previous 1535
compiles, builds and runs, but is very slow

Revision 1535 - (view) (annotate) - [select for diffs]
Modified Fri Dec 31 18:31:56 2010 UTC (14 years, 4 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36372 byte(s)
Diff to previous 1528
Well, it compiles and builds, but still has a bus error at runtime.

Revision 1528 - (view) (annotate) - [select for diffs]
Modified Fri Dec 17 20:11:05 2010 UTC (14 years, 4 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 36334 byte(s)
Diff to previous 1505
Doesn't build yet, but getting much closer...


Revision 1505 - (view) (annotate) - [select for diffs]
Modified Sun Oct 3 22:18:59 2010 UTC (14 years, 7 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 32776 byte(s)
Diff to previous 1504
Less busted than it was on last check-in, but still won't completely
build.


Revision 1504 - (view) (annotate) - [select for diffs]
Modified Sat Oct 2 20:41:53 2010 UTC (14 years, 7 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 32127 byte(s)
Diff to previous 1502
The C++ side now compiles.  Moving on to doForces

Revision 1502 - (view) (annotate) - [select for diffs]
Added Sat Oct 2 19:53:32 2010 UTC (14 years, 7 months ago) by gezelter
Original Path: branches/development/src/nonbonded/Electrostatic.cpp
File length: 32139 byte(s)
Many changes, and we're not quite done with this phase yet.

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