| 6 |
|
* redistribute this software in source and binary code form, provided |
| 7 |
|
* that the following conditions are met: |
| 8 |
|
* |
| 9 |
< |
* 1. Acknowledgement of the program authors must be made in any |
| 10 |
< |
* publication of scientific results based in part on use of the |
| 11 |
< |
* program. An acceptable form of acknowledgement is citation of |
| 12 |
< |
* the article in which the program was described (Matthew |
| 13 |
< |
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
| 14 |
< |
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
| 15 |
< |
* Parallel Simulation Engine for Molecular Dynamics," |
| 16 |
< |
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
| 17 |
< |
* |
| 18 |
< |
* 2. Redistributions of source code must retain the above copyright |
| 9 |
> |
* 1. Redistributions of source code must retain the above copyright |
| 10 |
|
* notice, this list of conditions and the following disclaimer. |
| 11 |
|
* |
| 12 |
< |
* 3. Redistributions in binary form must reproduce the above copyright |
| 12 |
> |
* 2. Redistributions in binary form must reproduce the above copyright |
| 13 |
|
* notice, this list of conditions and the following disclaimer in the |
| 14 |
|
* documentation and/or other materials provided with the |
| 15 |
|
* distribution. |
| 28 |
|
* arising out of the use of or inability to use software, even if the |
| 29 |
|
* University of Notre Dame has been advised of the possibility of |
| 30 |
|
* such damages. |
| 31 |
+ |
* |
| 32 |
+ |
* SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your |
| 33 |
+ |
* research, please cite the appropriate papers when you publish your |
| 34 |
+ |
* work. Good starting points are: |
| 35 |
+ |
* |
| 36 |
+ |
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
| 37 |
+ |
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
| 38 |
+ |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
| 39 |
+ |
* [4] Vardeman & Gezelter, in progress (2009). |
| 40 |
|
*/ |
| 41 |
|
|
| 42 |
|
#ifndef MDPARSER_SIMPLEPREPROCESSOR_HPP |
| 47 |
|
#include <sstream> |
| 48 |
|
#include "utils/StringTokenizer.hpp" |
| 49 |
|
#include "utils/Trim.hpp" |
| 50 |
< |
#include "utils/OOPSEException.hpp" |
| 50 |
> |
#include "utils/OpenMDException.hpp" |
| 51 |
|
#include "utils/simError.h" |
| 52 |
|
|
| 53 |
|
|
| 57 |
|
* @note only supports #include #ifdef, #ifndef, #endif, #define and #undef, c-like multiple line |
| 58 |
|
* comment is not supported, macro substitute is not supported. |
| 59 |
|
*/ |
| 60 |
< |
namespace oopse { |
| 60 |
> |
namespace OpenMD { |
| 61 |
|
class SimplePreprocessor { |
| 62 |
|
public: |
| 63 |
|
bool preprocess(std::istream& myStream, const std::string& filename, int startingLine, ostream& os) { |
| 82 |
|
// painCave.isFatal = 1; |
| 83 |
|
// simError(); |
| 84 |
|
// |
| 85 |
< |
// throw OOPSEException(ss.str()); |
| 85 |
> |
// throw OpenMDException(ss.str()); |
| 86 |
|
//} |
| 87 |
|
int lineNo = startingLine; |
| 88 |
|
os << "#line " << lineNo << " \"" << filename << "\"\n"; |
| 113 |
|
std::ifstream includeStream(includeFilename.c_str()); |
| 114 |
|
if (!includeStream.is_open()) { |
| 115 |
|
std::stringstream ss; |
| 116 |
< |
ss << "Can not open " << filename << " for preprocessing\n"; |
| 117 |
< |
throw OOPSEException(ss.str()); |
| 116 |
> |
ss << "Can not open " << includeFilename << " for preprocessing\n"; |
| 117 |
> |
throw OpenMDException(ss.str()); |
| 118 |
|
} |
| 119 |
|
|
| 120 |
|
bool ret = subPreprocessor.doPreprocess(includeStream, includeFilename, 1, os, defineSet, ifStates); |
