534 |
|
} |
535 |
|
|
536 |
|
int MDTreeParser::intConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
537 |
< |
#line 312 "MDTreeParser.g" |
537 |
> |
#line 349 "MDTreeParser.g" |
538 |
|
int ival; |
539 |
|
#line 540 "MDTreeParser.cpp" |
540 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST intConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
550 |
|
i1 = _t; |
551 |
|
match(_t,NUM_INT); |
552 |
|
_t = _t->getNextSibling(); |
553 |
< |
#line 313 "MDTreeParser.g" |
553 |
> |
#line 350 "MDTreeParser.g" |
554 |
|
ival = lexi_cast<int>(i1->getText()); |
555 |
|
#line 556 "MDTreeParser.cpp" |
556 |
|
break; |
560 |
|
i2 = _t; |
561 |
|
match(_t,NUM_LONG); |
562 |
|
_t = _t->getNextSibling(); |
563 |
< |
#line 314 "MDTreeParser.g" |
563 |
> |
#line 351 "MDTreeParser.g" |
564 |
|
ival = lexi_cast<int>(i2->getText()); |
565 |
|
#line 566 "MDTreeParser.cpp" |
566 |
|
break; |
581 |
|
} |
582 |
|
|
583 |
|
RealType MDTreeParser::floatConst(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
584 |
< |
#line 324 "MDTreeParser.g" |
584 |
> |
#line 361 "MDTreeParser.g" |
585 |
|
RealType dval; |
586 |
|
#line 587 "MDTreeParser.cpp" |
587 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST floatConst_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
597 |
|
d1 = _t; |
598 |
|
match(_t,NUM_FLOAT); |
599 |
|
_t = _t->getNextSibling(); |
600 |
< |
#line 325 "MDTreeParser.g" |
600 |
> |
#line 362 "MDTreeParser.g" |
601 |
|
dval = lexi_cast<RealType>(d1->getText()); |
602 |
|
#line 603 "MDTreeParser.cpp" |
603 |
|
break; |
607 |
|
d2 = _t; |
608 |
|
match(_t,NUM_DOUBLE); |
609 |
|
_t = _t->getNextSibling(); |
610 |
< |
#line 326 "MDTreeParser.g" |
610 |
> |
#line 363 "MDTreeParser.g" |
611 |
|
dval = lexi_cast<RealType>(d2->getText()); |
612 |
|
#line 613 "MDTreeParser.cpp" |
613 |
|
break; |
628 |
|
} |
629 |
|
|
630 |
|
vector<RealType> MDTreeParser::doubleNumberTuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
631 |
< |
#line 296 "MDTreeParser.g" |
631 |
> |
#line 333 "MDTreeParser.g" |
632 |
|
vector<RealType> dvec; |
633 |
|
#line 634 "MDTreeParser.cpp" |
634 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumberTuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
635 |
< |
#line 296 "MDTreeParser.g" |
635 |
> |
#line 333 "MDTreeParser.g" |
636 |
|
|
637 |
|
RealType dval; |
638 |
|
|
640 |
|
|
641 |
|
try { // for error handling |
642 |
|
{ // ( ... )+ |
643 |
< |
int _cnt95=0; |
643 |
> |
int _cnt122=0; |
644 |
|
for (;;) { |
645 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
646 |
|
_t = ASTNULL; |
647 |
|
if (((_t->getType() >= NUM_INT && _t->getType() <= NUM_DOUBLE))) { |
648 |
|
dval=doubleNumber(_t); |
649 |
|
_t = _retTree; |
650 |
< |
#line 300 "MDTreeParser.g" |
650 |
> |
#line 337 "MDTreeParser.g" |
651 |
|
dvec.push_back(dval); |
652 |
|
#line 653 "MDTreeParser.cpp" |
653 |
|
} |
654 |
|
else { |
655 |
< |
if ( _cnt95>=1 ) { goto _loop95; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
655 |
> |
if ( _cnt122>=1 ) { goto _loop122; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
656 |
|
} |
657 |
|
|
658 |
< |
_cnt95++; |
658 |
> |
_cnt122++; |
659 |
|
} |
660 |
< |
_loop95:; |
660 |
> |
_loop122:; |
661 |
|
} // ( ... )+ |
662 |
|
} |
663 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
772 |
|
for (;;) { |
773 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
774 |
|
_t = ASTNULL; |
775 |
< |
if ((_t->getType() == POSITION || _t->getType() == ORIENTATION || _t->getType() == ASSIGNEQUAL)) { |
775 |
> |
if ((_tokenSet_2.member(_t->getType()))) { |
776 |
|
atomstatement(_t); |
777 |
|
_t = _retTree; |
778 |
|
} |
809 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bondblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
810 |
|
|
811 |
|
try { // for error handling |
812 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t46 = _t; |
812 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t47 = _t; |
813 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp20_AST_in = _t; |
814 |
|
match(_t,BOND); |
815 |
|
_t = _t->getFirstChild(); |
816 |
< |
#line 144 "MDTreeParser.g" |
816 |
> |
#line 147 "MDTreeParser.g" |
817 |
|
BondStamp* currBondStamp = new BondStamp(); blockStack.push(currBondStamp); |
818 |
|
#line 819 "MDTreeParser.cpp" |
819 |
|
{ // ( ... )* |
820 |
|
for (;;) { |
821 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
822 |
|
_t = ASTNULL; |
823 |
< |
if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { |
823 |
> |
if ((_tokenSet_3.member(_t->getType()))) { |
824 |
|
bondstatement(_t); |
825 |
|
_t = _retTree; |
826 |
|
} |
827 |
|
else { |
828 |
< |
goto _loop48; |
828 |
> |
goto _loop49; |
829 |
|
} |
830 |
|
|
831 |
|
} |
832 |
< |
_loop48:; |
832 |
> |
_loop49:; |
833 |
|
} // ( ... )* |
834 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp21_AST_in = _t; |
835 |
|
match(_t,ENDBLOCK); |
836 |
|
_t = _t->getNextSibling(); |
837 |
< |
_t = __t46; |
837 |
> |
_t = __t47; |
838 |
|
_t = _t->getNextSibling(); |
839 |
< |
#line 146 "MDTreeParser.g" |
839 |
> |
#line 149 "MDTreeParser.g" |
840 |
|
|
841 |
+ |
blockStack.top()->validate(); |
842 |
|
blockStack.pop(); |
843 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
844 |
|
currMoleculeStamp->addBondStamp(currBondStamp); |
845 |
|
|
846 |
< |
#line 846 "MDTreeParser.cpp" |
846 |
> |
#line 847 "MDTreeParser.cpp" |
847 |
|
} |
848 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
849 |
|
reportError(ex); |
857 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bendblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
858 |
|
|
859 |
|
try { // for error handling |
860 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; |
860 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t59 = _t; |
861 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp22_AST_in = _t; |
862 |
|
match(_t,BEND); |
863 |
|
_t = _t->getFirstChild(); |
864 |
< |
#line 162 "MDTreeParser.g" |
864 |
> |
#line 174 "MDTreeParser.g" |
865 |
|
BendStamp* currBendStamp = new BendStamp(); blockStack.push(currBendStamp); |
866 |
< |
#line 866 "MDTreeParser.cpp" |
866 |
> |
#line 867 "MDTreeParser.cpp" |
867 |
|
{ // ( ... )* |
868 |
|
for (;;) { |
869 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
870 |
|
_t = ASTNULL; |
871 |
< |
if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { |
871 |
> |
if ((_tokenSet_4.member(_t->getType()))) { |
872 |
|
bendstatement(_t); |
873 |
|
_t = _retTree; |
874 |
|
} |
875 |
|
else { |
876 |
< |
goto _loop54; |
876 |
> |
goto _loop61; |
877 |
|
} |
878 |
|
|
879 |
|
} |
880 |
< |
_loop54:; |
880 |
> |
_loop61:; |
881 |
|
} // ( ... )* |
882 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp23_AST_in = _t; |
883 |
|
match(_t,ENDBLOCK); |
884 |
|
_t = _t->getNextSibling(); |
885 |
< |
_t = __t52; |
885 |
> |
_t = __t59; |
886 |
|
_t = _t->getNextSibling(); |
887 |
< |
#line 164 "MDTreeParser.g" |
887 |
> |
#line 176 "MDTreeParser.g" |
888 |
|
|
889 |
|
blockStack.top()->validate(); |
890 |
|
blockStack.pop(); |
891 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
892 |
|
currMoleculeStamp->addBendStamp(currBendStamp); |
893 |
|
|
894 |
< |
#line 894 "MDTreeParser.cpp" |
894 |
> |
#line 895 "MDTreeParser.cpp" |
895 |
|
} |
896 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
897 |
|
reportError(ex); |
905 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST torsionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
906 |
|
|
907 |
|
try { // for error handling |
908 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t58 = _t; |
908 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t72 = _t; |
909 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp24_AST_in = _t; |
910 |
|
match(_t,TORSION); |
911 |
|
_t = _t->getFirstChild(); |
912 |
< |
#line 181 "MDTreeParser.g" |
912 |
> |
#line 201 "MDTreeParser.g" |
913 |
|
TorsionStamp* currTorsionStamp = new TorsionStamp(); blockStack.push(currTorsionStamp); |
914 |
< |
#line 914 "MDTreeParser.cpp" |
914 |
> |
#line 915 "MDTreeParser.cpp" |
915 |
|
{ // ( ... )* |
916 |
|
for (;;) { |
917 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
918 |
|
_t = ASTNULL; |
919 |
< |
if ((_t->getType() == MEMBERS || _t->getType() == ASSIGNEQUAL)) { |
919 |
> |
if ((_tokenSet_5.member(_t->getType()))) { |
920 |
|
torsionstatement(_t); |
921 |
|
_t = _retTree; |
922 |
|
} |
923 |
|
else { |
924 |
< |
goto _loop60; |
924 |
> |
goto _loop74; |
925 |
|
} |
926 |
|
|
927 |
|
} |
928 |
< |
_loop60:; |
928 |
> |
_loop74:; |
929 |
|
} // ( ... )* |
930 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp25_AST_in = _t; |
931 |
|
match(_t,ENDBLOCK); |
932 |
|
_t = _t->getNextSibling(); |
933 |
< |
_t = __t58; |
933 |
> |
_t = __t72; |
934 |
|
_t = _t->getNextSibling(); |
935 |
< |
#line 183 "MDTreeParser.g" |
935 |
> |
#line 203 "MDTreeParser.g" |
936 |
|
|
937 |
|
blockStack.top()->validate(); |
938 |
|
blockStack.pop(); |
939 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
940 |
|
currMoleculeStamp->addTorsionStamp(currTorsionStamp); |
941 |
|
|
942 |
< |
#line 942 "MDTreeParser.cpp" |
942 |
> |
#line 943 "MDTreeParser.cpp" |
943 |
|
} |
944 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
945 |
|
reportError(ex); |
953 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST inversionblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
954 |
|
|
955 |
|
try { // for error handling |
956 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; |
956 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t86 = _t; |
957 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp26_AST_in = _t; |
958 |
|
match(_t,INVERSION); |
959 |
|
_t = _t->getFirstChild(); |
960 |
< |
#line 200 "MDTreeParser.g" |
960 |
> |
#line 230 "MDTreeParser.g" |
961 |
|
InversionStamp* currInversionStamp = new InversionStamp(); blockStack.push(currInversionStamp); |
962 |
< |
#line 962 "MDTreeParser.cpp" |
962 |
> |
#line 963 "MDTreeParser.cpp" |
963 |
|
{ // ( ... )* |
964 |
|
for (;;) { |
965 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
966 |
|
_t = ASTNULL; |
967 |
< |
if ((_t->getType() == CENTER || _t->getType() == SATELLITES || _t->getType() == ASSIGNEQUAL)) { |
967 |
> |
if ((_tokenSet_6.member(_t->getType()))) { |
968 |
|
inversionstatement(_t); |
969 |
|
_t = _retTree; |
970 |
|
} |
971 |
|
else { |
972 |
< |
goto _loop66; |
972 |
> |
goto _loop88; |
973 |
|
} |
974 |
|
|
975 |
|
} |
976 |
< |
_loop66:; |
976 |
> |
_loop88:; |
977 |
|
} // ( ... )* |
978 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp27_AST_in = _t; |
979 |
|
match(_t,ENDBLOCK); |
980 |
|
_t = _t->getNextSibling(); |
981 |
< |
_t = __t64; |
981 |
> |
_t = __t86; |
982 |
|
_t = _t->getNextSibling(); |
983 |
< |
#line 202 "MDTreeParser.g" |
983 |
> |
#line 232 "MDTreeParser.g" |
984 |
|
|
985 |
|
blockStack.top()->validate(); |
986 |
|
blockStack.pop(); |
987 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
988 |
|
currMoleculeStamp->addInversionStamp(currInversionStamp); |
989 |
|
|
990 |
< |
#line 990 "MDTreeParser.cpp" |
990 |
> |
#line 991 "MDTreeParser.cpp" |
991 |
|
} |
992 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
993 |
|
reportError(ex); |
999 |
|
|
1000 |
|
void MDTreeParser::rigidbodyblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1001 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodyblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1002 |
< |
#line 221 "MDTreeParser.g" |
1002 |
> |
#line 258 "MDTreeParser.g" |
1003 |
|
|
1004 |
|
int index; |
1005 |
|
|
1006 |
< |
#line 1006 "MDTreeParser.cpp" |
1006 |
> |
#line 1007 "MDTreeParser.cpp" |
1007 |
|
|
1008 |
|
try { // for error handling |
1009 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t71 = _t; |
1009 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t98 = _t; |
1010 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp28_AST_in = _t; |
1011 |
|
match(_t,RIGIDBODY); |
1012 |
|
_t = _t->getFirstChild(); |
1013 |
|
index=intConst(_t); |
1014 |
|
_t = _retTree; |
1015 |
< |
#line 225 "MDTreeParser.g" |
1015 |
> |
#line 262 "MDTreeParser.g" |
1016 |
|
RigidBodyStamp* currRigidBodyStamp = new RigidBodyStamp(index); blockStack.push(currRigidBodyStamp); |
1017 |
< |
#line 1017 "MDTreeParser.cpp" |
1017 |
> |
#line 1018 "MDTreeParser.cpp" |
1018 |
|
{ // ( ... )* |
1019 |
|
for (;;) { |
1020 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1024 |
|
_t = _retTree; |
1025 |
|
} |
1026 |
|
else { |
1027 |
< |
goto _loop73; |
1027 |
> |
goto _loop100; |
1028 |
|
} |
1029 |
|
|
1030 |
|
} |
1031 |
< |
_loop73:; |
1031 |
> |
_loop100:; |
1032 |
|
} // ( ... )* |
1033 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp29_AST_in = _t; |
1034 |
|
match(_t,ENDBLOCK); |
1035 |
|
_t = _t->getNextSibling(); |
1036 |
< |
_t = __t71; |
1036 |
> |
_t = __t98; |
1037 |
|
_t = _t->getNextSibling(); |
1038 |
< |
#line 227 "MDTreeParser.g" |
1038 |
> |
#line 264 "MDTreeParser.g" |
1039 |
|
|
1040 |
|
blockStack.top()->validate(); |
1041 |
|
blockStack.pop(); |
1042 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
1043 |
|
currMoleculeStamp->addRigidBodyStamp(currRigidBodyStamp); |
1044 |
|
|
1045 |
< |
#line 1045 "MDTreeParser.cpp" |
1045 |
> |
#line 1046 "MDTreeParser.cpp" |
1046 |
|
} |
1047 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1048 |
|
reportError(ex); |
1056 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1057 |
|
|
1058 |
|
try { // for error handling |
1059 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; |
1059 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t104 = _t; |
1060 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp30_AST_in = _t; |
1061 |
|
match(_t,CUTOFFGROUP); |
1062 |
|
_t = _t->getFirstChild(); |
1063 |
< |
#line 244 "MDTreeParser.g" |
1063 |
> |
#line 281 "MDTreeParser.g" |
1064 |
|
CutoffGroupStamp* currCutoffGroupStamp = new CutoffGroupStamp(); blockStack.push(currCutoffGroupStamp); |
1065 |
< |
#line 1065 "MDTreeParser.cpp" |
1065 |
> |
#line 1066 "MDTreeParser.cpp" |
1066 |
|
{ // ( ... )* |
1067 |
|
for (;;) { |
1068 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1072 |
|
_t = _retTree; |
1073 |
|
} |
1074 |
|
else { |
1075 |
< |
goto _loop79; |
1075 |
> |
goto _loop106; |
1076 |
|
} |
1077 |
|
|
1078 |
|
} |
1079 |
< |
_loop79:; |
1079 |
> |
_loop106:; |
1080 |
|
} // ( ... )* |
1081 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp31_AST_in = _t; |
1082 |
|
match(_t,ENDBLOCK); |
1083 |
|
_t = _t->getNextSibling(); |
1084 |
< |
_t = __t77; |
1084 |
> |
_t = __t104; |
1085 |
|
_t = _t->getNextSibling(); |
1086 |
< |
#line 246 "MDTreeParser.g" |
1086 |
> |
#line 283 "MDTreeParser.g" |
1087 |
|
|
1088 |
|
blockStack.top()->validate(); |
1089 |
|
blockStack.pop(); |
1090 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
1091 |
|
currMoleculeStamp->addCutoffGroupStamp(currCutoffGroupStamp); |
1092 |
|
|
1093 |
< |
#line 1093 "MDTreeParser.cpp" |
1093 |
> |
#line 1094 "MDTreeParser.cpp" |
1094 |
|
} |
1095 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1096 |
|
reportError(ex); |
1102 |
|
|
1103 |
|
void MDTreeParser::fragmentblock(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1104 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST fragmentblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1105 |
< |
#line 263 "MDTreeParser.g" |
1105 |
> |
#line 300 "MDTreeParser.g" |
1106 |
|
int ival; |
1107 |
< |
#line 1107 "MDTreeParser.cpp" |
1107 |
> |
#line 1108 "MDTreeParser.cpp" |
1108 |
|
|
1109 |
|
try { // for error handling |
1110 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; |
1110 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t110 = _t; |
1111 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp32_AST_in = _t; |
1112 |
|
match(_t,FRAGMENT); |
1113 |
|
_t = _t->getFirstChild(); |
1114 |
|
ival=intConst(_t); |
1115 |
|
_t = _retTree; |
1116 |
< |
#line 264 "MDTreeParser.g" |
1116 |
> |
#line 301 "MDTreeParser.g" |
1117 |
|
FragmentStamp* currFragmentStamp = new FragmentStamp(ival); blockStack.push(currFragmentStamp); |
1118 |
< |
#line 1118 "MDTreeParser.cpp" |
1118 |
> |
#line 1119 "MDTreeParser.cpp" |
1119 |
|
{ // ( ... )* |
1120 |
|
for (;;) { |
1121 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1125 |
|
_t = _retTree; |
1126 |
|
} |
1127 |
|
else { |
1128 |
< |
goto _loop85; |
1128 |
> |
goto _loop112; |
1129 |
|
} |
1130 |
|
|
1131 |
|
} |
1132 |
< |
_loop85:; |
1132 |
> |
_loop112:; |
1133 |
|
} // ( ... )* |
1134 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp33_AST_in = _t; |
1135 |
|
match(_t,ENDBLOCK); |
1136 |
|
_t = _t->getNextSibling(); |
1137 |
< |
_t = __t83; |
1137 |
> |
_t = __t110; |
1138 |
|
_t = _t->getNextSibling(); |
1139 |
< |
#line 266 "MDTreeParser.g" |
1139 |
> |
#line 303 "MDTreeParser.g" |
1140 |
|
|
1141 |
|
blockStack.top()->validate(); |
1142 |
|
blockStack.pop(); |
1143 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
1144 |
|
currMoleculeStamp->addFragmentStamp(currFragmentStamp); |
1145 |
|
|
1146 |
< |
#line 1146 "MDTreeParser.cpp" |
1146 |
> |
#line 1147 "MDTreeParser.cpp" |
1147 |
|
} |
1148 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1149 |
|
reportError(ex); |
1157 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST constraintblock_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1158 |
|
|
1159 |
|
try { // for error handling |
1160 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t88 = _t; |
1160 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t115 = _t; |
1161 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp34_AST_in = _t; |
1162 |
|
match(_t,CONSTRAINT); |
1163 |
|
_t = _t->getFirstChild(); |
1164 |
< |
#line 277 "MDTreeParser.g" |
1164 |
> |
#line 314 "MDTreeParser.g" |
1165 |
|
ConstraintStamp* currConstraintStamp = new ConstraintStamp(); blockStack.push(currConstraintStamp); |
1166 |
< |
#line 1166 "MDTreeParser.cpp" |
1166 |
> |
#line 1167 "MDTreeParser.cpp" |
1167 |
|
{ // ( ... )* |
1168 |
|
for (;;) { |
1169 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1173 |
|
_t = _retTree; |
1174 |
|
} |
1175 |
|
else { |
1176 |
< |
goto _loop90; |
1176 |
> |
goto _loop117; |
1177 |
|
} |
1178 |
|
|
1179 |
|
} |
1180 |
< |
_loop90:; |
1180 |
> |
_loop117:; |
1181 |
|
} // ( ... )* |
1182 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST tmp35_AST_in = _t; |
1183 |
|
match(_t,ENDBLOCK); |
1184 |
|
_t = _t->getNextSibling(); |
1185 |
< |
_t = __t88; |
1185 |
> |
_t = __t115; |
1186 |
|
_t = _t->getNextSibling(); |
1187 |
< |
#line 279 "MDTreeParser.g" |
1187 |
> |
#line 316 "MDTreeParser.g" |
1188 |
|
|
1189 |
|
blockStack.pop(); |
1190 |
|
MoleculeStamp* currMoleculeStamp = static_cast<MoleculeStamp*>(blockStack.top()); |
1191 |
|
currMoleculeStamp->addConstraintStamp(currConstraintStamp); |
1192 |
|
|
1193 |
< |
#line 1193 "MDTreeParser.cpp" |
1193 |
> |
#line 1194 "MDTreeParser.cpp" |
1194 |
|
} |
1195 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1196 |
|
reportError(ex); |
1205 |
|
#line 132 "MDTreeParser.g" |
1206 |
|
|
1207 |
|
vector<RealType> dvec; |
1208 |
+ |
RealType rval; |
1209 |
|
AtomStamp* currAtomStamp = static_cast<AtomStamp*>(blockStack.top()); |
1210 |
|
|
1211 |
|
|
1212 |
< |
#line 1211 "MDTreeParser.cpp" |
1212 |
> |
#line 1213 "MDTreeParser.cpp" |
1213 |
|
|
1214 |
|
try { // for error handling |
1215 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1231 |
|
_t = _retTree; |
1232 |
|
_t = __t43; |
1233 |
|
_t = _t->getNextSibling(); |
1234 |
< |
#line 139 "MDTreeParser.g" |
1234 |
> |
#line 140 "MDTreeParser.g" |
1235 |
|
currAtomStamp->setPosition(dvec); |
1236 |
< |
#line 1235 "MDTreeParser.cpp" |
1236 |
> |
#line 1237 "MDTreeParser.cpp" |
1237 |
|
break; |
1238 |
|
} |
1239 |
|
case ORIENTATION: |
1246 |
|
_t = _retTree; |
1247 |
|
_t = __t44; |
1248 |
|
_t = _t->getNextSibling(); |
1249 |
< |
#line 140 "MDTreeParser.g" |
1249 |
> |
#line 141 "MDTreeParser.g" |
1250 |
|
currAtomStamp->setOrientation(dvec); |
1251 |
< |
#line 1250 "MDTreeParser.cpp" |
1251 |
> |
#line 1252 "MDTreeParser.cpp" |
1252 |
|
break; |
1253 |
|
} |
1254 |
+ |
case CHARGE: |
1255 |
+ |
{ |
1256 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t45 = _t; |
1257 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; |
1258 |
+ |
match(_t,CHARGE); |
1259 |
+ |
_t = _t->getFirstChild(); |
1260 |
+ |
rval=doubleNumber(_t); |
1261 |
+ |
_t = _retTree; |
1262 |
+ |
_t = __t45; |
1263 |
+ |
_t = _t->getNextSibling(); |
1264 |
+ |
#line 142 "MDTreeParser.g" |
1265 |
+ |
currAtomStamp->overrideCharge(rval); |
1266 |
+ |
#line 1267 "MDTreeParser.cpp" |
1267 |
+ |
break; |
1268 |
+ |
} |
1269 |
|
default: |
1270 |
|
{ |
1271 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1280 |
|
_retTree = _t; |
1281 |
|
} |
1282 |
|
|
1283 |
+ |
RealType MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1284 |
+ |
#line 355 "MDTreeParser.g" |
1285 |
+ |
RealType dval; |
1286 |
+ |
#line 1287 "MDTreeParser.cpp" |
1287 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1288 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; |
1289 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; |
1290 |
+ |
|
1291 |
+ |
try { // for error handling |
1292 |
+ |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1293 |
+ |
_t = ASTNULL; |
1294 |
+ |
switch ( _t->getType()) { |
1295 |
+ |
case NUM_INT: |
1296 |
+ |
case NUM_LONG: |
1297 |
+ |
{ |
1298 |
+ |
ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1299 |
+ |
intConst(_t); |
1300 |
+ |
_t = _retTree; |
1301 |
+ |
#line 356 "MDTreeParser.g" |
1302 |
+ |
dval = lexi_cast<RealType>(ic->getText()); |
1303 |
+ |
#line 1304 "MDTreeParser.cpp" |
1304 |
+ |
break; |
1305 |
+ |
} |
1306 |
+ |
case NUM_FLOAT: |
1307 |
+ |
case NUM_DOUBLE: |
1308 |
+ |
{ |
1309 |
+ |
fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1310 |
+ |
floatConst(_t); |
1311 |
+ |
_t = _retTree; |
1312 |
+ |
#line 357 "MDTreeParser.g" |
1313 |
+ |
dval = lexi_cast<RealType>(fc->getText()); |
1314 |
+ |
#line 1315 "MDTreeParser.cpp" |
1315 |
+ |
break; |
1316 |
+ |
} |
1317 |
+ |
default: |
1318 |
+ |
{ |
1319 |
+ |
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1320 |
+ |
} |
1321 |
+ |
} |
1322 |
+ |
} |
1323 |
+ |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1324 |
+ |
reportError(ex); |
1325 |
+ |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1326 |
+ |
_t = _t->getNextSibling(); |
1327 |
+ |
} |
1328 |
+ |
_retTree = _t; |
1329 |
+ |
return dval; |
1330 |
+ |
} |
1331 |
+ |
|
1332 |
|
void MDTreeParser::bondstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1333 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bondstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1334 |
< |
#line 153 "MDTreeParser.g" |
1334 |
> |
#line 157 "MDTreeParser.g" |
1335 |
|
|
1336 |
|
vector<int> ivec; |
1337 |
+ |
RealType rval; |
1338 |
+ |
vector<RealType> dvec; |
1339 |
|
BondStamp* currBondStamp = static_cast<BondStamp*>(blockStack.top()); |
1340 |
|
|
1341 |
< |
#line 1274 "MDTreeParser.cpp" |
1341 |
> |
#line 1342 "MDTreeParser.cpp" |
1342 |
|
|
1343 |
|
try { // for error handling |
1344 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1352 |
|
} |
1353 |
|
case MEMBERS: |
1354 |
|
{ |
1355 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t50 = _t; |
1356 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp38_AST_in = _t; |
1355 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t51 = _t; |
1356 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; |
1357 |
|
match(_t,MEMBERS); |
1358 |
|
_t = _t->getFirstChild(); |
1359 |
|
ivec=inttuple(_t); |
1360 |
|
_t = _retTree; |
1361 |
< |
_t = __t50; |
1361 |
> |
_t = __t51; |
1362 |
|
_t = _t->getNextSibling(); |
1363 |
< |
#line 159 "MDTreeParser.g" |
1363 |
> |
#line 165 "MDTreeParser.g" |
1364 |
|
currBondStamp->setMembers(ivec); |
1365 |
< |
#line 1298 "MDTreeParser.cpp" |
1365 |
> |
#line 1366 "MDTreeParser.cpp" |
1366 |
|
break; |
1367 |
|
} |
1368 |
+ |
case FIXED: |
1369 |
+ |
{ |
1370 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t52 = _t; |
1371 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; |
1372 |
+ |
match(_t,FIXED); |
1373 |
+ |
_t = _t->getFirstChild(); |
1374 |
+ |
rval=doubleNumber(_t); |
1375 |
+ |
_t = _retTree; |
1376 |
+ |
_t = __t52; |
1377 |
+ |
_t = _t->getNextSibling(); |
1378 |
+ |
#line 166 "MDTreeParser.g" |
1379 |
+ |
currBondStamp->overrideType("Fixed", rval); |
1380 |
+ |
#line 1381 "MDTreeParser.cpp" |
1381 |
+ |
break; |
1382 |
+ |
} |
1383 |
+ |
case HARMONIC: |
1384 |
+ |
{ |
1385 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t53 = _t; |
1386 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; |
1387 |
+ |
match(_t,HARMONIC); |
1388 |
+ |
_t = _t->getFirstChild(); |
1389 |
+ |
dvec=doubleNumberTuple(_t); |
1390 |
+ |
_t = _retTree; |
1391 |
+ |
_t = __t53; |
1392 |
+ |
_t = _t->getNextSibling(); |
1393 |
+ |
#line 167 "MDTreeParser.g" |
1394 |
+ |
currBondStamp->overrideType("Harmonic", dvec); |
1395 |
+ |
#line 1396 "MDTreeParser.cpp" |
1396 |
+ |
break; |
1397 |
+ |
} |
1398 |
+ |
case CUBIC: |
1399 |
+ |
{ |
1400 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t54 = _t; |
1401 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; |
1402 |
+ |
match(_t,CUBIC); |
1403 |
+ |
_t = _t->getFirstChild(); |
1404 |
+ |
dvec=doubleNumberTuple(_t); |
1405 |
+ |
_t = _retTree; |
1406 |
+ |
_t = __t54; |
1407 |
+ |
_t = _t->getNextSibling(); |
1408 |
+ |
#line 168 "MDTreeParser.g" |
1409 |
+ |
currBondStamp->overrideType("Cubic", dvec); |
1410 |
+ |
#line 1411 "MDTreeParser.cpp" |
1411 |
+ |
break; |
1412 |
+ |
} |
1413 |
+ |
case QUARTIC: |
1414 |
+ |
{ |
1415 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t55 = _t; |
1416 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; |
1417 |
+ |
match(_t,QUARTIC); |
1418 |
+ |
_t = _t->getFirstChild(); |
1419 |
+ |
dvec=doubleNumberTuple(_t); |
1420 |
+ |
_t = _retTree; |
1421 |
+ |
_t = __t55; |
1422 |
+ |
_t = _t->getNextSibling(); |
1423 |
+ |
#line 169 "MDTreeParser.g" |
1424 |
+ |
currBondStamp->overrideType("Quartic", dvec); |
1425 |
+ |
#line 1426 "MDTreeParser.cpp" |
1426 |
+ |
break; |
1427 |
+ |
} |
1428 |
+ |
case POLYNOMIAL: |
1429 |
+ |
{ |
1430 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; |
1431 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; |
1432 |
+ |
match(_t,POLYNOMIAL); |
1433 |
+ |
_t = _t->getFirstChild(); |
1434 |
+ |
dvec=doubleNumberTuple(_t); |
1435 |
+ |
_t = _retTree; |
1436 |
+ |
_t = __t56; |
1437 |
+ |
_t = _t->getNextSibling(); |
1438 |
+ |
#line 170 "MDTreeParser.g" |
1439 |
+ |
currBondStamp->overrideType("Polynomial", dvec); |
1440 |
+ |
#line 1441 "MDTreeParser.cpp" |
1441 |
+ |
break; |
1442 |
+ |
} |
1443 |
+ |
case MORSE: |
1444 |
+ |
{ |
1445 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t57 = _t; |
1446 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; |
1447 |
+ |
match(_t,MORSE); |
1448 |
+ |
_t = _t->getFirstChild(); |
1449 |
+ |
dvec=doubleNumberTuple(_t); |
1450 |
+ |
_t = _retTree; |
1451 |
+ |
_t = __t57; |
1452 |
+ |
_t = _t->getNextSibling(); |
1453 |
+ |
#line 171 "MDTreeParser.g" |
1454 |
+ |
currBondStamp->overrideType("Morse", dvec); |
1455 |
+ |
#line 1456 "MDTreeParser.cpp" |
1456 |
+ |
break; |
1457 |
+ |
} |
1458 |
|
default: |
1459 |
|
{ |
1460 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1470 |
|
} |
1471 |
|
|
1472 |
|
vector<int> MDTreeParser::inttuple(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1473 |
< |
#line 304 "MDTreeParser.g" |
1473 |
> |
#line 341 "MDTreeParser.g" |
1474 |
|
vector<int> ivec; |
1475 |
< |
#line 1318 "MDTreeParser.cpp" |
1475 |
> |
#line 1476 "MDTreeParser.cpp" |
1476 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST inttuple_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1477 |
< |
#line 304 "MDTreeParser.g" |
1477 |
> |
#line 341 "MDTreeParser.g" |
1478 |
|
|
1479 |
|
int ival; |
1480 |
|
|
1481 |
< |
#line 1324 "MDTreeParser.cpp" |
1481 |
> |
#line 1482 "MDTreeParser.cpp" |
1482 |
|
|
1483 |
|
try { // for error handling |
1484 |
|
{ // ( ... )+ |
1485 |
< |
int _cnt98=0; |
1485 |
> |
int _cnt125=0; |
1486 |
|
for (;;) { |
1487 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1488 |
|
_t = ASTNULL; |
1489 |
|
if ((_t->getType() == NUM_INT || _t->getType() == NUM_LONG)) { |
1490 |
|
ival=intConst(_t); |
1491 |
|
_t = _retTree; |
1492 |
< |
#line 308 "MDTreeParser.g" |
1492 |
> |
#line 345 "MDTreeParser.g" |
1493 |
|
ivec.push_back(ival); |
1494 |
< |
#line 1337 "MDTreeParser.cpp" |
1494 |
> |
#line 1495 "MDTreeParser.cpp" |
1495 |
|
} |
1496 |
|
else { |
1497 |
< |
if ( _cnt98>=1 ) { goto _loop98; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
1497 |
> |
if ( _cnt125>=1 ) { goto _loop125; } else {throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t);} |
1498 |
|
} |
1499 |
|
|
1500 |
< |
_cnt98++; |
1500 |
> |
_cnt125++; |
1501 |
|
} |
1502 |
< |
_loop98:; |
1502 |
> |
_loop125:; |
1503 |
|
} // ( ... )+ |
1504 |
|
} |
1505 |
|
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1513 |
|
|
1514 |
|
void MDTreeParser::bendstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1515 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST bendstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1516 |
< |
#line 172 "MDTreeParser.g" |
1516 |
> |
#line 184 "MDTreeParser.g" |
1517 |
|
|
1518 |
|
vector<int> ivec; |
1519 |
+ |
vector<RealType> dvec; |
1520 |
|
BendStamp* currBendStamp = static_cast<BendStamp*>(blockStack.top()); |
1521 |
|
|
1522 |
< |
#line 1364 "MDTreeParser.cpp" |
1522 |
> |
#line 1523 "MDTreeParser.cpp" |
1523 |
|
|
1524 |
|
try { // for error handling |
1525 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1533 |
|
} |
1534 |
|
case MEMBERS: |
1535 |
|
{ |
1536 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t56 = _t; |
1537 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp39_AST_in = _t; |
1536 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t63 = _t; |
1537 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp46_AST_in = _t; |
1538 |
|
match(_t,MEMBERS); |
1539 |
|
_t = _t->getFirstChild(); |
1540 |
|
ivec=inttuple(_t); |
1541 |
|
_t = _retTree; |
1542 |
< |
_t = __t56; |
1542 |
> |
_t = __t63; |
1543 |
|
_t = _t->getNextSibling(); |
1544 |
< |
#line 178 "MDTreeParser.g" |
1544 |
> |
#line 191 "MDTreeParser.g" |
1545 |
|
currBendStamp->setMembers(ivec); |
1546 |
< |
#line 1388 "MDTreeParser.cpp" |
1546 |
> |
#line 1547 "MDTreeParser.cpp" |
1547 |
|
break; |
1548 |
|
} |
1549 |
+ |
case HARMONIC: |
1550 |
+ |
{ |
1551 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t64 = _t; |
1552 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp47_AST_in = _t; |
1553 |
+ |
match(_t,HARMONIC); |
1554 |
+ |
_t = _t->getFirstChild(); |
1555 |
+ |
dvec=doubleNumberTuple(_t); |
1556 |
+ |
_t = _retTree; |
1557 |
+ |
_t = __t64; |
1558 |
+ |
_t = _t->getNextSibling(); |
1559 |
+ |
#line 192 "MDTreeParser.g" |
1560 |
+ |
currBendStamp->overrideType("Harmonic", dvec); |
1561 |
+ |
#line 1562 "MDTreeParser.cpp" |
1562 |
+ |
break; |
1563 |
+ |
} |
1564 |
+ |
case GHOSTBEND: |
1565 |
+ |
{ |
1566 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t65 = _t; |
1567 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp48_AST_in = _t; |
1568 |
+ |
match(_t,GHOSTBEND); |
1569 |
+ |
_t = _t->getFirstChild(); |
1570 |
+ |
dvec=doubleNumberTuple(_t); |
1571 |
+ |
_t = _retTree; |
1572 |
+ |
_t = __t65; |
1573 |
+ |
_t = _t->getNextSibling(); |
1574 |
+ |
#line 193 "MDTreeParser.g" |
1575 |
+ |
currBendStamp->overrideType("GhostBend", dvec); |
1576 |
+ |
#line 1577 "MDTreeParser.cpp" |
1577 |
+ |
break; |
1578 |
+ |
} |
1579 |
+ |
case UREYBRADLEY: |
1580 |
+ |
{ |
1581 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t66 = _t; |
1582 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp49_AST_in = _t; |
1583 |
+ |
match(_t,UREYBRADLEY); |
1584 |
+ |
_t = _t->getFirstChild(); |
1585 |
+ |
dvec=doubleNumberTuple(_t); |
1586 |
+ |
_t = _retTree; |
1587 |
+ |
_t = __t66; |
1588 |
+ |
_t = _t->getNextSibling(); |
1589 |
+ |
#line 194 "MDTreeParser.g" |
1590 |
+ |
currBendStamp->overrideType("UreyBradley", dvec); |
1591 |
+ |
#line 1592 "MDTreeParser.cpp" |
1592 |
+ |
break; |
1593 |
+ |
} |
1594 |
+ |
case CUBIC: |
1595 |
+ |
{ |
1596 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t67 = _t; |
1597 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp50_AST_in = _t; |
1598 |
+ |
match(_t,CUBIC); |
1599 |
+ |
_t = _t->getFirstChild(); |
1600 |
+ |
dvec=doubleNumberTuple(_t); |
1601 |
+ |
_t = _retTree; |
1602 |
+ |
_t = __t67; |
1603 |
+ |
_t = _t->getNextSibling(); |
1604 |
+ |
#line 195 "MDTreeParser.g" |
1605 |
+ |
currBendStamp->overrideType("Cubic", dvec); |
1606 |
+ |
#line 1607 "MDTreeParser.cpp" |
1607 |
+ |
break; |
1608 |
+ |
} |
1609 |
+ |
case QUARTIC: |
1610 |
+ |
{ |
1611 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; |
1612 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp51_AST_in = _t; |
1613 |
+ |
match(_t,QUARTIC); |
1614 |
+ |
_t = _t->getFirstChild(); |
1615 |
+ |
dvec=doubleNumberTuple(_t); |
1616 |
+ |
_t = _retTree; |
1617 |
+ |
_t = __t68; |
1618 |
+ |
_t = _t->getNextSibling(); |
1619 |
+ |
#line 196 "MDTreeParser.g" |
1620 |
+ |
currBendStamp->overrideType("Quartic", dvec); |
1621 |
+ |
#line 1622 "MDTreeParser.cpp" |
1622 |
+ |
break; |
1623 |
+ |
} |
1624 |
+ |
case POLYNOMIAL: |
1625 |
+ |
{ |
1626 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; |
1627 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp52_AST_in = _t; |
1628 |
+ |
match(_t,POLYNOMIAL); |
1629 |
+ |
_t = _t->getFirstChild(); |
1630 |
+ |
dvec=doubleNumberTuple(_t); |
1631 |
+ |
_t = _retTree; |
1632 |
+ |
_t = __t69; |
1633 |
+ |
_t = _t->getNextSibling(); |
1634 |
+ |
#line 197 "MDTreeParser.g" |
1635 |
+ |
currBendStamp->overrideType("Polynomial", dvec); |
1636 |
+ |
#line 1637 "MDTreeParser.cpp" |
1637 |
+ |
break; |
1638 |
+ |
} |
1639 |
+ |
case COSINE: |
1640 |
+ |
{ |
1641 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t70 = _t; |
1642 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp53_AST_in = _t; |
1643 |
+ |
match(_t,COSINE); |
1644 |
+ |
_t = _t->getFirstChild(); |
1645 |
+ |
dvec=doubleNumberTuple(_t); |
1646 |
+ |
_t = _retTree; |
1647 |
+ |
_t = __t70; |
1648 |
+ |
_t = _t->getNextSibling(); |
1649 |
+ |
#line 198 "MDTreeParser.g" |
1650 |
+ |
currBendStamp->overrideType("Cosine", dvec); |
1651 |
+ |
#line 1652 "MDTreeParser.cpp" |
1652 |
+ |
break; |
1653 |
+ |
} |
1654 |
|
default: |
1655 |
|
{ |
1656 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1667 |
|
|
1668 |
|
void MDTreeParser::torsionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1669 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST torsionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1670 |
< |
#line 191 "MDTreeParser.g" |
1670 |
> |
#line 211 "MDTreeParser.g" |
1671 |
|
|
1672 |
|
vector<int> ivec; |
1673 |
+ |
vector<RealType> dvec; |
1674 |
|
TorsionStamp* currTorsionStamp = static_cast<TorsionStamp*>(blockStack.top()); |
1675 |
|
|
1676 |
< |
#line 1412 "MDTreeParser.cpp" |
1676 |
> |
#line 1677 "MDTreeParser.cpp" |
1677 |
|
|
1678 |
|
try { // for error handling |
1679 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1687 |
|
} |
1688 |
|
case MEMBERS: |
1689 |
|
{ |
1690 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t62 = _t; |
1691 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp40_AST_in = _t; |
1690 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t76 = _t; |
1691 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp54_AST_in = _t; |
1692 |
|
match(_t,MEMBERS); |
1693 |
|
_t = _t->getFirstChild(); |
1694 |
|
ivec=inttuple(_t); |
1695 |
|
_t = _retTree; |
1696 |
< |
_t = __t62; |
1696 |
> |
_t = __t76; |
1697 |
|
_t = _t->getNextSibling(); |
1698 |
< |
#line 197 "MDTreeParser.g" |
1698 |
> |
#line 218 "MDTreeParser.g" |
1699 |
|
currTorsionStamp->setMembers(ivec); |
1700 |
< |
#line 1436 "MDTreeParser.cpp" |
1700 |
> |
#line 1701 "MDTreeParser.cpp" |
1701 |
|
break; |
1702 |
|
} |
1703 |
+ |
case GHOSTTORSION: |
1704 |
+ |
{ |
1705 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t77 = _t; |
1706 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp55_AST_in = _t; |
1707 |
+ |
match(_t,GHOSTTORSION); |
1708 |
+ |
_t = _t->getFirstChild(); |
1709 |
+ |
dvec=doubleNumberTuple(_t); |
1710 |
+ |
_t = _retTree; |
1711 |
+ |
_t = __t77; |
1712 |
+ |
_t = _t->getNextSibling(); |
1713 |
+ |
#line 219 "MDTreeParser.g" |
1714 |
+ |
currTorsionStamp->overrideType("GhostTorsion", dvec); |
1715 |
+ |
#line 1716 "MDTreeParser.cpp" |
1716 |
+ |
break; |
1717 |
+ |
} |
1718 |
+ |
case CUBIC: |
1719 |
+ |
{ |
1720 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t78 = _t; |
1721 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp56_AST_in = _t; |
1722 |
+ |
match(_t,CUBIC); |
1723 |
+ |
_t = _t->getFirstChild(); |
1724 |
+ |
dvec=doubleNumberTuple(_t); |
1725 |
+ |
_t = _retTree; |
1726 |
+ |
_t = __t78; |
1727 |
+ |
_t = _t->getNextSibling(); |
1728 |
+ |
#line 220 "MDTreeParser.g" |
1729 |
+ |
currTorsionStamp->overrideType("Cubic", dvec); |
1730 |
+ |
#line 1731 "MDTreeParser.cpp" |
1731 |
+ |
break; |
1732 |
+ |
} |
1733 |
+ |
case QUARTIC: |
1734 |
+ |
{ |
1735 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t79 = _t; |
1736 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp57_AST_in = _t; |
1737 |
+ |
match(_t,QUARTIC); |
1738 |
+ |
_t = _t->getFirstChild(); |
1739 |
+ |
dvec=doubleNumberTuple(_t); |
1740 |
+ |
_t = _retTree; |
1741 |
+ |
_t = __t79; |
1742 |
+ |
_t = _t->getNextSibling(); |
1743 |
+ |
#line 221 "MDTreeParser.g" |
1744 |
+ |
currTorsionStamp->overrideType("Quartic", dvec); |
1745 |
+ |
#line 1746 "MDTreeParser.cpp" |
1746 |
+ |
break; |
1747 |
+ |
} |
1748 |
+ |
case POLYNOMIAL: |
1749 |
+ |
{ |
1750 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t80 = _t; |
1751 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp58_AST_in = _t; |
1752 |
+ |
match(_t,POLYNOMIAL); |
1753 |
+ |
_t = _t->getFirstChild(); |
1754 |
+ |
dvec=doubleNumberTuple(_t); |
1755 |
+ |
_t = _retTree; |
1756 |
+ |
_t = __t80; |
1757 |
+ |
_t = _t->getNextSibling(); |
1758 |
+ |
#line 222 "MDTreeParser.g" |
1759 |
+ |
currTorsionStamp->overrideType("Polynomial", dvec); |
1760 |
+ |
#line 1761 "MDTreeParser.cpp" |
1761 |
+ |
break; |
1762 |
+ |
} |
1763 |
+ |
case CHARMM: |
1764 |
+ |
{ |
1765 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; |
1766 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp59_AST_in = _t; |
1767 |
+ |
match(_t,CHARMM); |
1768 |
+ |
_t = _t->getFirstChild(); |
1769 |
+ |
dvec=doubleNumberTuple(_t); |
1770 |
+ |
_t = _retTree; |
1771 |
+ |
_t = __t81; |
1772 |
+ |
_t = _t->getNextSibling(); |
1773 |
+ |
#line 223 "MDTreeParser.g" |
1774 |
+ |
currTorsionStamp->overrideType("Charmm", dvec); |
1775 |
+ |
#line 1776 "MDTreeParser.cpp" |
1776 |
+ |
break; |
1777 |
+ |
} |
1778 |
+ |
case OPLS: |
1779 |
+ |
{ |
1780 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t82 = _t; |
1781 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp60_AST_in = _t; |
1782 |
+ |
match(_t,OPLS); |
1783 |
+ |
_t = _t->getFirstChild(); |
1784 |
+ |
dvec=doubleNumberTuple(_t); |
1785 |
+ |
_t = _retTree; |
1786 |
+ |
_t = __t82; |
1787 |
+ |
_t = _t->getNextSibling(); |
1788 |
+ |
#line 224 "MDTreeParser.g" |
1789 |
+ |
currTorsionStamp->overrideType("Opls", dvec); |
1790 |
+ |
#line 1791 "MDTreeParser.cpp" |
1791 |
+ |
break; |
1792 |
+ |
} |
1793 |
+ |
case TRAPPE: |
1794 |
+ |
{ |
1795 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t83 = _t; |
1796 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp61_AST_in = _t; |
1797 |
+ |
match(_t,TRAPPE); |
1798 |
+ |
_t = _t->getFirstChild(); |
1799 |
+ |
dvec=doubleNumberTuple(_t); |
1800 |
+ |
_t = _retTree; |
1801 |
+ |
_t = __t83; |
1802 |
+ |
_t = _t->getNextSibling(); |
1803 |
+ |
#line 225 "MDTreeParser.g" |
1804 |
+ |
currTorsionStamp->overrideType("Trappe", dvec); |
1805 |
+ |
#line 1806 "MDTreeParser.cpp" |
1806 |
+ |
break; |
1807 |
+ |
} |
1808 |
+ |
case HARMONIC: |
1809 |
+ |
{ |
1810 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t84 = _t; |
1811 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp62_AST_in = _t; |
1812 |
+ |
match(_t,HARMONIC); |
1813 |
+ |
_t = _t->getFirstChild(); |
1814 |
+ |
dvec=doubleNumberTuple(_t); |
1815 |
+ |
_t = _retTree; |
1816 |
+ |
_t = __t84; |
1817 |
+ |
_t = _t->getNextSibling(); |
1818 |
+ |
#line 226 "MDTreeParser.g" |
1819 |
+ |
currTorsionStamp->overrideType("Harmonic", dvec); |
1820 |
+ |
#line 1821 "MDTreeParser.cpp" |
1821 |
+ |
break; |
1822 |
+ |
} |
1823 |
|
default: |
1824 |
|
{ |
1825 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1836 |
|
|
1837 |
|
void MDTreeParser::inversionstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1838 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST inversionstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1839 |
< |
#line 210 "MDTreeParser.g" |
1839 |
> |
#line 240 "MDTreeParser.g" |
1840 |
|
|
1841 |
|
int icent; |
1842 |
|
vector<int> ivec; |
1843 |
+ |
vector<RealType> dvec; |
1844 |
|
InversionStamp* currInversionStamp = static_cast<InversionStamp*>(blockStack.top()); |
1845 |
|
|
1846 |
< |
#line 1461 "MDTreeParser.cpp" |
1846 |
> |
#line 1847 "MDTreeParser.cpp" |
1847 |
|
|
1848 |
|
try { // for error handling |
1849 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1857 |
|
} |
1858 |
|
case CENTER: |
1859 |
|
{ |
1860 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t68 = _t; |
1861 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp41_AST_in = _t; |
1860 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t90 = _t; |
1861 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp63_AST_in = _t; |
1862 |
|
match(_t,CENTER); |
1863 |
|
_t = _t->getFirstChild(); |
1864 |
|
icent=intConst(_t); |
1865 |
|
_t = _retTree; |
1866 |
< |
_t = __t68; |
1866 |
> |
_t = __t90; |
1867 |
|
_t = _t->getNextSibling(); |
1868 |
< |
#line 217 "MDTreeParser.g" |
1868 |
> |
#line 248 "MDTreeParser.g" |
1869 |
|
currInversionStamp->setCenter(icent); |
1870 |
< |
#line 1485 "MDTreeParser.cpp" |
1870 |
> |
#line 1871 "MDTreeParser.cpp" |
1871 |
|
break; |
1872 |
|
} |
1873 |
|
case SATELLITES: |
1874 |
|
{ |
1875 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t69 = _t; |
1876 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp42_AST_in = _t; |
1875 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t91 = _t; |
1876 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp64_AST_in = _t; |
1877 |
|
match(_t,SATELLITES); |
1878 |
|
_t = _t->getFirstChild(); |
1879 |
|
ivec=inttuple(_t); |
1880 |
|
_t = _retTree; |
1881 |
< |
_t = __t69; |
1881 |
> |
_t = __t91; |
1882 |
|
_t = _t->getNextSibling(); |
1883 |
< |
#line 218 "MDTreeParser.g" |
1883 |
> |
#line 249 "MDTreeParser.g" |
1884 |
|
currInversionStamp->setSatellites(ivec); |
1885 |
< |
#line 1500 "MDTreeParser.cpp" |
1885 |
> |
#line 1886 "MDTreeParser.cpp" |
1886 |
|
break; |
1887 |
|
} |
1888 |
+ |
case AMBERIMPROPER: |
1889 |
+ |
{ |
1890 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; |
1891 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp65_AST_in = _t; |
1892 |
+ |
match(_t,AMBERIMPROPER); |
1893 |
+ |
_t = _t->getFirstChild(); |
1894 |
+ |
dvec=doubleNumberTuple(_t); |
1895 |
+ |
_t = _retTree; |
1896 |
+ |
_t = __t92; |
1897 |
+ |
_t = _t->getNextSibling(); |
1898 |
+ |
#line 250 "MDTreeParser.g" |
1899 |
+ |
currInversionStamp->overrideType("AmberImproper", dvec); |
1900 |
+ |
#line 1901 "MDTreeParser.cpp" |
1901 |
+ |
break; |
1902 |
+ |
} |
1903 |
+ |
case IMPROPERCOSINE: |
1904 |
+ |
{ |
1905 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t93 = _t; |
1906 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp66_AST_in = _t; |
1907 |
+ |
match(_t,IMPROPERCOSINE); |
1908 |
+ |
_t = _t->getFirstChild(); |
1909 |
+ |
dvec=doubleNumberTuple(_t); |
1910 |
+ |
_t = _retTree; |
1911 |
+ |
_t = __t93; |
1912 |
+ |
_t = _t->getNextSibling(); |
1913 |
+ |
#line 251 "MDTreeParser.g" |
1914 |
+ |
currInversionStamp->overrideType("ImproperCosine", dvec); |
1915 |
+ |
#line 1916 "MDTreeParser.cpp" |
1916 |
+ |
break; |
1917 |
+ |
} |
1918 |
+ |
case HARMONIC: |
1919 |
+ |
{ |
1920 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t94 = _t; |
1921 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp67_AST_in = _t; |
1922 |
+ |
match(_t,HARMONIC); |
1923 |
+ |
_t = _t->getFirstChild(); |
1924 |
+ |
dvec=doubleNumberTuple(_t); |
1925 |
+ |
_t = _retTree; |
1926 |
+ |
_t = __t94; |
1927 |
+ |
_t = _t->getNextSibling(); |
1928 |
+ |
#line 252 "MDTreeParser.g" |
1929 |
+ |
currInversionStamp->overrideType("Harmonic", dvec); |
1930 |
+ |
#line 1931 "MDTreeParser.cpp" |
1931 |
+ |
break; |
1932 |
+ |
} |
1933 |
+ |
case CENTRALATOMHEIGHT: |
1934 |
+ |
{ |
1935 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t95 = _t; |
1936 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp68_AST_in = _t; |
1937 |
+ |
match(_t,CENTRALATOMHEIGHT); |
1938 |
+ |
_t = _t->getFirstChild(); |
1939 |
+ |
dvec=doubleNumberTuple(_t); |
1940 |
+ |
_t = _retTree; |
1941 |
+ |
_t = __t95; |
1942 |
+ |
_t = _t->getNextSibling(); |
1943 |
+ |
#line 253 "MDTreeParser.g" |
1944 |
+ |
currInversionStamp->overrideType("CentralAtomHeight", dvec); |
1945 |
+ |
#line 1946 "MDTreeParser.cpp" |
1946 |
+ |
break; |
1947 |
+ |
} |
1948 |
+ |
case DREIDING: |
1949 |
+ |
{ |
1950 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST __t96 = _t; |
1951 |
+ |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp69_AST_in = _t; |
1952 |
+ |
match(_t,DREIDING); |
1953 |
+ |
_t = _t->getFirstChild(); |
1954 |
+ |
dvec=doubleNumberTuple(_t); |
1955 |
+ |
_t = _retTree; |
1956 |
+ |
_t = __t96; |
1957 |
+ |
_t = _t->getNextSibling(); |
1958 |
+ |
#line 254 "MDTreeParser.g" |
1959 |
+ |
currInversionStamp->overrideType("Dreiding", dvec); |
1960 |
+ |
#line 1961 "MDTreeParser.cpp" |
1961 |
+ |
break; |
1962 |
+ |
} |
1963 |
|
default: |
1964 |
|
{ |
1965 |
|
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1976 |
|
|
1977 |
|
void MDTreeParser::rigidbodystatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1978 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST rigidbodystatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1979 |
< |
#line 235 "MDTreeParser.g" |
1979 |
> |
#line 272 "MDTreeParser.g" |
1980 |
|
|
1981 |
|
vector<int> ivec; |
1982 |
|
RigidBodyStamp* currRigidBodyStamp = static_cast<RigidBodyStamp*>(blockStack.top()); |
1983 |
|
|
1984 |
< |
#line 1524 "MDTreeParser.cpp" |
1984 |
> |
#line 1985 "MDTreeParser.cpp" |
1985 |
|
|
1986 |
|
try { // for error handling |
1987 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1995 |
|
} |
1996 |
|
case MEMBERS: |
1997 |
|
{ |
1998 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t75 = _t; |
1999 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp43_AST_in = _t; |
1998 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t102 = _t; |
1999 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp70_AST_in = _t; |
2000 |
|
match(_t,MEMBERS); |
2001 |
|
_t = _t->getFirstChild(); |
2002 |
|
ivec=inttuple(_t); |
2003 |
|
_t = _retTree; |
2004 |
< |
_t = __t75; |
2004 |
> |
_t = __t102; |
2005 |
|
_t = _t->getNextSibling(); |
2006 |
< |
#line 241 "MDTreeParser.g" |
2006 |
> |
#line 278 "MDTreeParser.g" |
2007 |
|
currRigidBodyStamp->setMembers(ivec); |
2008 |
< |
#line 1548 "MDTreeParser.cpp" |
2008 |
> |
#line 2009 "MDTreeParser.cpp" |
2009 |
|
break; |
2010 |
|
} |
2011 |
|
default: |
2024 |
|
|
2025 |
|
void MDTreeParser::cutoffgroupstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
2026 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST cutoffgroupstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
2027 |
< |
#line 254 "MDTreeParser.g" |
2027 |
> |
#line 291 "MDTreeParser.g" |
2028 |
|
|
2029 |
|
vector<int> ivec; |
2030 |
|
CutoffGroupStamp* currCutoffGroupStamp = static_cast<CutoffGroupStamp*>(blockStack.top()); |
2031 |
|
|
2032 |
< |
#line 1572 "MDTreeParser.cpp" |
2032 |
> |
#line 2033 "MDTreeParser.cpp" |
2033 |
|
|
2034 |
|
try { // for error handling |
2035 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
2043 |
|
} |
2044 |
|
case MEMBERS: |
2045 |
|
{ |
2046 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t81 = _t; |
2047 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp44_AST_in = _t; |
2046 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t108 = _t; |
2047 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp71_AST_in = _t; |
2048 |
|
match(_t,MEMBERS); |
2049 |
|
_t = _t->getFirstChild(); |
2050 |
|
ivec=inttuple(_t); |
2051 |
|
_t = _retTree; |
2052 |
< |
_t = __t81; |
2052 |
> |
_t = __t108; |
2053 |
|
_t = _t->getNextSibling(); |
2054 |
< |
#line 260 "MDTreeParser.g" |
2054 |
> |
#line 297 "MDTreeParser.g" |
2055 |
|
currCutoffGroupStamp->setMembers(ivec); |
2056 |
< |
#line 1596 "MDTreeParser.cpp" |
2056 |
> |
#line 2057 "MDTreeParser.cpp" |
2057 |
|
break; |
2058 |
|
} |
2059 |
|
default: |
2087 |
|
|
2088 |
|
void MDTreeParser::constraintstatement(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
2089 |
|
ANTLR_USE_NAMESPACE(antlr)RefAST constraintstatement_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
2090 |
< |
#line 286 "MDTreeParser.g" |
2090 |
> |
#line 323 "MDTreeParser.g" |
2091 |
|
|
2092 |
|
vector<int> ivec; |
2093 |
|
ConstraintStamp* currConstraintStamp = static_cast<ConstraintStamp*>(blockStack.top()); |
2094 |
|
|
2095 |
< |
#line 1635 "MDTreeParser.cpp" |
2095 |
> |
#line 2096 "MDTreeParser.cpp" |
2096 |
|
|
2097 |
|
try { // for error handling |
2098 |
|
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
2106 |
|
} |
2107 |
|
case MEMBERS: |
2108 |
|
{ |
2109 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST __t92 = _t; |
2110 |
< |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp45_AST_in = _t; |
2109 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST __t119 = _t; |
2110 |
> |
ANTLR_USE_NAMESPACE(antlr)RefAST tmp72_AST_in = _t; |
2111 |
|
match(_t,MEMBERS); |
2112 |
|
_t = _t->getFirstChild(); |
2113 |
|
ivec=inttuple(_t); |
2114 |
|
_t = _retTree; |
2115 |
< |
_t = __t92; |
2115 |
> |
_t = __t119; |
2116 |
|
_t = _t->getNextSibling(); |
2117 |
< |
#line 292 "MDTreeParser.g" |
2117 |
> |
#line 329 "MDTreeParser.g" |
2118 |
|
currConstraintStamp->setMembers(ivec); |
2119 |
< |
#line 1659 "MDTreeParser.cpp" |
2119 |
> |
#line 2120 "MDTreeParser.cpp" |
2120 |
|
break; |
2121 |
|
} |
2122 |
|
default: |
2133 |
|
_retTree = _t; |
2134 |
|
} |
2135 |
|
|
1675 |
– |
RealType MDTreeParser::doubleNumber(ANTLR_USE_NAMESPACE(antlr)RefAST _t) { |
1676 |
– |
#line 318 "MDTreeParser.g" |
1677 |
– |
RealType dval; |
1678 |
– |
#line 1679 "MDTreeParser.cpp" |
1679 |
– |
ANTLR_USE_NAMESPACE(antlr)RefAST doubleNumber_AST_in = (_t == ANTLR_USE_NAMESPACE(antlr)RefAST(ASTNULL)) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1680 |
– |
ANTLR_USE_NAMESPACE(antlr)RefAST ic = ANTLR_USE_NAMESPACE(antlr)nullAST; |
1681 |
– |
ANTLR_USE_NAMESPACE(antlr)RefAST fc = ANTLR_USE_NAMESPACE(antlr)nullAST; |
1682 |
– |
|
1683 |
– |
try { // for error handling |
1684 |
– |
if (_t == ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1685 |
– |
_t = ASTNULL; |
1686 |
– |
switch ( _t->getType()) { |
1687 |
– |
case NUM_INT: |
1688 |
– |
case NUM_LONG: |
1689 |
– |
{ |
1690 |
– |
ic = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1691 |
– |
intConst(_t); |
1692 |
– |
_t = _retTree; |
1693 |
– |
#line 319 "MDTreeParser.g" |
1694 |
– |
dval = lexi_cast<RealType>(ic->getText()); |
1695 |
– |
#line 1696 "MDTreeParser.cpp" |
1696 |
– |
break; |
1697 |
– |
} |
1698 |
– |
case NUM_FLOAT: |
1699 |
– |
case NUM_DOUBLE: |
1700 |
– |
{ |
1701 |
– |
fc = (_t == ASTNULL) ? ANTLR_USE_NAMESPACE(antlr)nullAST : _t; |
1702 |
– |
floatConst(_t); |
1703 |
– |
_t = _retTree; |
1704 |
– |
#line 320 "MDTreeParser.g" |
1705 |
– |
dval = lexi_cast<RealType>(fc->getText()); |
1706 |
– |
#line 1707 "MDTreeParser.cpp" |
1707 |
– |
break; |
1708 |
– |
} |
1709 |
– |
default: |
1710 |
– |
{ |
1711 |
– |
throw ANTLR_USE_NAMESPACE(antlr)NoViableAltException(_t); |
1712 |
– |
} |
1713 |
– |
} |
1714 |
– |
} |
1715 |
– |
catch (ANTLR_USE_NAMESPACE(antlr)RecognitionException& ex) { |
1716 |
– |
reportError(ex); |
1717 |
– |
if ( _t != ANTLR_USE_NAMESPACE(antlr)nullAST ) |
1718 |
– |
_t = _t->getNextSibling(); |
1719 |
– |
} |
1720 |
– |
_retTree = _t; |
1721 |
– |
return dval; |
1722 |
– |
} |
1723 |
– |
|
2136 |
|
void MDTreeParser::initializeASTFactory( ANTLR_USE_NAMESPACE(antlr)ASTFactory& ) |
2137 |
|
{ |
2138 |
|
} |
2163 |
|
"\"flucQ\"", |
2164 |
|
"\"RNEMD\"", |
2165 |
|
"\"minimizer\"", |
2166 |
+ |
"\"Fixed\"", |
2167 |
+ |
"\"Harmonic\"", |
2168 |
+ |
"\"Cubic\"", |
2169 |
+ |
"\"Quartic\"", |
2170 |
+ |
"\"Polynomial\"", |
2171 |
+ |
"\"Morse\"", |
2172 |
+ |
"\"GhostBend\"", |
2173 |
+ |
"\"UreyBradley\"", |
2174 |
+ |
"\"Cosine\"", |
2175 |
+ |
"\"GhostTorsion\"", |
2176 |
+ |
"\"Charmm\"", |
2177 |
+ |
"\"Opls\"", |
2178 |
+ |
"\"Trappe\"", |
2179 |
+ |
"\"AmberImproper\"", |
2180 |
+ |
"\"ImproperCosine\"", |
2181 |
+ |
"\"CentralAtomHeight\"", |
2182 |
+ |
"\"Dreiding\"", |
2183 |
+ |
"\"charge\"", |
2184 |
|
"ENDBLOCK", |
2185 |
|
"ID", |
2186 |
|
"ASSIGNEQUAL", |
2218 |
|
0 |
2219 |
|
}; |
2220 |
|
|
2221 |
< |
const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 327155952UL, 0UL, 0UL, 0UL }; |
2221 |
> |
const unsigned long MDTreeParser::_tokenSet_0_data_[] = { 58720496UL, 16384UL, 0UL, 0UL }; |
2222 |
|
// "component" "molecule" "zconstraint" "restraint" "flucQ" "RNEMD" "minimizer" |
2223 |
|
// ASSIGNEQUAL |
2224 |
|
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_0(_tokenSet_0_data_,4); |
2225 |
< |
const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 268631808UL, 0UL, 0UL, 0UL }; |
2225 |
> |
const unsigned long MDTreeParser::_tokenSet_1_data_[] = { 196352UL, 16384UL, 0UL, 0UL }; |
2226 |
|
// "atom" "bond" "bend" "torsion" "inversion" "rigidBody" "cutoffGroup" |
2227 |
|
// "constraint" "fragment" ASSIGNEQUAL |
2228 |
|
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_1(_tokenSet_1_data_,4); |
2229 |
+ |
const unsigned long MDTreeParser::_tokenSet_2_data_[] = { 6291456UL, 18432UL, 0UL, 0UL }; |
2230 |
+ |
// "position" "orientation" "charge" ASSIGNEQUAL |
2231 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_2(_tokenSet_2_data_,4); |
2232 |
+ |
const unsigned long MDTreeParser::_tokenSet_3_data_[] = { 4228120576UL, 16384UL, 0UL, 0UL }; |
2233 |
+ |
// "members" "Fixed" "Harmonic" "Cubic" "Quartic" "Polynomial" "Morse" |
2234 |
+ |
// ASSIGNEQUAL |
2235 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_3(_tokenSet_3_data_,4); |
2236 |
+ |
const unsigned long MDTreeParser::_tokenSet_4_data_[] = { 2013528064UL, 16391UL, 0UL, 0UL }; |
2237 |
+ |
// "members" "Harmonic" "Cubic" "Quartic" "Polynomial" "GhostBend" "UreyBradley" |
2238 |
+ |
// "Cosine" ASSIGNEQUAL |
2239 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_4(_tokenSet_4_data_,4); |
2240 |
+ |
const unsigned long MDTreeParser::_tokenSet_5_data_[] = { 2013528064UL, 16504UL, 0UL, 0UL }; |
2241 |
+ |
// "members" "Harmonic" "Cubic" "Quartic" "Polynomial" "GhostTorsion" "Charmm" |
2242 |
+ |
// "Opls" "Trappe" ASSIGNEQUAL |
2243 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_5(_tokenSet_5_data_,4); |
2244 |
+ |
const unsigned long MDTreeParser::_tokenSet_6_data_[] = { 135790592UL, 18304UL, 0UL, 0UL }; |
2245 |
+ |
// "center" "satellites" "Harmonic" "AmberImproper" "ImproperCosine" "CentralAtomHeight" |
2246 |
+ |
// "Dreiding" ASSIGNEQUAL |
2247 |
+ |
const ANTLR_USE_NAMESPACE(antlr)BitSet MDTreeParser::_tokenSet_6(_tokenSet_6_data_,4); |
2248 |
|
|
2249 |
|
|