Changes for implementing Amber force field: Added Inversions and worked on BaseAtomTypes so that they'd function with the fortran side.
Changes required for Inversions and Base Atom types. This will break OOPSE badly for a few days or so...
Checking in changes for Hefland moment calculations
Massive changes preparing for release of OOPSE-4: The main difference is that the new MD file format (.md, .dump, .eor) now contains meta-data information along with the configuration information.
Adding single precision capabilities to c++ side
Many performance improvements
Added check to make sure md file exists.
Throw exception if the file can not be opened for preprocessing
autoconf modernization and cruft removal
replace grammar for numerical parsing
fix a nasty negative integer parsing problem by refining the grammar
End of the Link --> List Return of the Oject-Oriented replace yacc/lex parser with antlr parser