--- trunk/src/math/SquareMatrix3.hpp	2009/11/25 20:02:06	1390
+++ trunk/src/math/SquareMatrix3.hpp	2012/08/22 02:28:28	1782
@@ -36,7 +36,8 @@
  * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).             
  * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
  * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).          
- * [4]  Vardeman & Gezelter, in progress (2009).                        
+ * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
+ * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
  */
  
 /**
@@ -47,6 +48,8 @@
  */
 #ifndef MATH_SQUAREMATRIX3_HPP
 #define  MATH_SQUAREMATRIX3_HPP
+#include "config.h"
+#include <cmath>
 #include <vector>
 #include "Quaternion.hpp"
 #include "SquareMatrix.hpp"
@@ -109,6 +112,7 @@ namespace OpenMD {
       return *this;
     }
 
+    
     /**
      * Sets this matrix to a rotation matrix by three euler angles
      * @ param euler
@@ -185,7 +189,6 @@ namespace OpenMD {
         
         
     }
-
 
 
     /**
@@ -417,7 +420,7 @@ namespace OpenMD {
     Vector3<Real> v_maxI, v_k, v_j;
 
     // diagonalize using Jacobi
-    jacobi(a, w, v);
+    SquareMatrix3<Real>::jacobi(a, w, v);
     // if all the eigenvalues are the same, return identity matrix
     if (w[0] == w[1] && w[0] == w[2] ) {
       v = SquareMatrix3<Real>::identity();