Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Adding single precision capabilities to c++ side
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refactor Hydrodynamics module.
xemacs has been drafted to perform our indentation services
fix compilation problem for g++ 3.4
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
add getArray function to RectMatrix and Vector classes
more work in Snapshot
Snapshot and SnapshotManager in progress
Math library pass the unit test
except diagonalize(), all of functions in math library pass the test
more bugs get fixed at math library
more tests on math library
math library in progress
fix incompatible declaration in jacobi
math library in progress
Matrix in progress, test in isOrthogonal of SquareMatrix is failed by some reasons
refactory vector and matrix classes
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