Inversion fixes and amber mostly working
Changed some logic in Polynomial, PolynomialTorsionType, and CharmmTorsionType to allow for polynomials to be set via the = operator.
Adding single precision capabilities to c++ side
adding transpose into SquareMatrix3; fix a bug in AtomStamp where orientation is not set correctly.
Fixing some compile-time warnings and bugs for icc 9.1 on Mac OS X
Adding :LegendrePolynomial
OptionSectionParser get compiled
xemacs has been drafted to perform our indentation services
fix compilation problem for g++ 3.4
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