1 |
gezelter |
2 |
#include <stdlib.h> |
2 |
|
|
#include <stdio.h> |
3 |
|
|
|
4 |
tim |
3 |
#include "io/parse_tree.h" |
5 |
|
|
#include "utils/simError.h" |
6 |
gezelter |
2 |
|
7 |
|
|
#ifdef IS_MPI |
8 |
|
|
#define __is_lex__ |
9 |
tim |
3 |
#include "io/mpiBASS.h" |
10 |
gezelter |
2 |
#endif |
11 |
|
|
|
12 |
|
|
void walk_down( struct node_tag* the_node, struct namespc the_namespc ); |
13 |
|
|
int mol_index; // keeps track of the number of molecules |
14 |
|
|
int comp_index; // keeps track of the number of components. |
15 |
|
|
|
16 |
|
|
/* |
17 |
|
|
* This is the parse tree function that is called by the yacc |
18 |
|
|
* routine. It passes the global node and namespace to the recursive |
19 |
|
|
* walk_down routine to explore the node tree. |
20 |
|
|
*/ |
21 |
|
|
|
22 |
|
|
void pt_me( struct node_tag* head_node ){ |
23 |
|
|
|
24 |
|
|
struct namespc global_namespc; |
25 |
|
|
|
26 |
|
|
if( head_node->type != GLOBAL_HEAD ){ |
27 |
|
|
sprintf( painCave.errMsg, |
28 |
|
|
"Parse tree error: The head node was not the global node.\n" ); |
29 |
|
|
painCave.isFatal = 1; |
30 |
|
|
simError(); |
31 |
|
|
#ifdef IS_MPI |
32 |
|
|
mpiInterfaceExit(); |
33 |
|
|
#endif //is_mpi |
34 |
|
|
} |
35 |
|
|
|
36 |
|
|
global_namespc.index = 0; |
37 |
|
|
global_namespc.type = GLOBAL_HEAD; |
38 |
|
|
|
39 |
|
|
mol_index = 0; |
40 |
|
|
comp_index = 0; |
41 |
|
|
walk_down( head_node->next_stmt, global_namespc ); |
42 |
|
|
// closed global namespace and exit |
43 |
|
|
|
44 |
|
|
} |
45 |
|
|
|
46 |
|
|
/* |
47 |
|
|
* This is the main logic workhorse routine for the node tree |
48 |
|
|
* parser. It recursively walks down the node list and calls the |
49 |
|
|
* appropriate interface functions acording to the node types. It will |
50 |
|
|
* also set the appropriate namespace for the nodes. |
51 |
|
|
* |
52 |
|
|
* Note: the nodes only know about the namespace of their |
53 |
|
|
* current level, the namespace above themselves is hidden. |
54 |
|
|
*/ |
55 |
|
|
|
56 |
|
|
void walk_down( struct node_tag* the_node, struct namespc the_namespc ){ |
57 |
|
|
|
58 |
|
|
struct namespc current_namespc; |
59 |
|
|
|
60 |
|
|
if( the_node != NULL ){ |
61 |
|
|
|
62 |
|
|
if( the_node->type == GLOBAL_HEAD ){ |
63 |
|
|
print_tree_error( the_node, "Too many global regions" ); |
64 |
|
|
} |
65 |
|
|
|
66 |
|
|
if( the_node->stmt_list != NULL ){ |
67 |
|
|
|
68 |
|
|
// the statement is a block node of some sort |
69 |
|
|
|
70 |
|
|
switch( the_node->type ){ |
71 |
|
|
|
72 |
|
|
case COMPONENT_HEAD: |
73 |
|
|
if( the_namespc.type != GLOBAL_HEAD ){ |
74 |
|
|
print_tree_error( the_node, |
75 |
|
|
"component block is not in the global namespace" ); |
76 |
|
|
} |
77 |
|
|
else{ |
78 |
|
|
init_component( comp_index ); |
79 |
|
|
current_namespc.index = comp_index; |
80 |
|
|
current_namespc.type = COMPONENT_HEAD; |
81 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
82 |
|
|
comp_index++; |
83 |
|
|
} |
84 |
|
|
break; |
85 |
|
|
|
86 |
|
|
case MOLECULE_HEAD: |
87 |
|
|
if( the_namespc.type != GLOBAL_HEAD ){ |
88 |
|
|
print_tree_error( the_node, |
89 |
|
|
"Molecule block is not in the global namespace" ); |
90 |
|
|
} |
91 |
|
|
else{ |
92 |
|
|
init_molecule( mol_index ); |
93 |
|
|
current_namespc.index = mol_index; |
94 |
|
|
current_namespc.type = MOLECULE_HEAD; |
95 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
96 |
|
|
mol_index++; |
97 |
|
|
} |
98 |
|
|
break; |
99 |
|
|
|
100 |
|
|
case ATOM_HEAD: |
101 |
|
|
if( the_namespc.type != MOLECULE_HEAD ){ |
102 |
|
|
print_tree_error( the_node, |
103 |
|
|
"The atom block is not in a molecule namespace" ); |
104 |
|
|
} |
105 |
|
|
else{ |
106 |
|
|
init_atom( the_node->index ); |
107 |
|
|
current_namespc.index = the_node->index; |
108 |
|
|
current_namespc.type = the_node->type; |
109 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
110 |
|
|
} |
111 |
|
|
break; |
112 |
|
|
|
113 |
|
|
case RIGIDBODY_HEAD: |
114 |
|
|
if( the_namespc.type != MOLECULE_HEAD ){ |
115 |
|
|
print_tree_error( the_node, |
116 |
|
|
"The RigidBody block is not in a Molecule namespace" ); |
117 |
|
|
} |
118 |
|
|
else{ |
119 |
|
|
init_rigidbody( the_node->index ); |
120 |
|
|
current_namespc.index = the_node->index; |
121 |
|
|
current_namespc.type = the_node->type; |
122 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
123 |
|
|
} |
124 |
|
|
break; |
125 |
|
|
|
126 |
|
|
case CUTOFFGROUP_HEAD: |
127 |
|
|
if( the_namespc.type != MOLECULE_HEAD ){ |
128 |
|
|
print_tree_error( the_node, |
129 |
|
|
"The CutoffGroup block is not in a Molecule namespace" ); |
130 |
|
|
} |
131 |
|
|
else{ |
132 |
|
|
init_cutoffgroup( the_node->index ); |
133 |
|
|
current_namespc.index = the_node->index; |
134 |
|
|
current_namespc.type = the_node->type; |
135 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
136 |
|
|
} |
137 |
|
|
break; |
138 |
|
|
|
139 |
|
|
case BOND_HEAD: |
140 |
|
|
if( the_namespc.type != MOLECULE_HEAD ){ |
141 |
|
|
print_tree_error( the_node, |
142 |
|
|
"The bond block is not in a molecule namespace" ); |
143 |
|
|
} |
144 |
|
|
else{ |
145 |
|
|
init_bond( the_node->index ); |
146 |
|
|
current_namespc.index = the_node->index; |
147 |
|
|
current_namespc.type = the_node->type; |
148 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
149 |
|
|
} |
150 |
|
|
break; |
151 |
|
|
|
152 |
|
|
case BEND_HEAD: |
153 |
|
|
if( the_namespc.type != MOLECULE_HEAD ){ |
154 |
|
|
print_tree_error( the_node, |
155 |
|
|
"The bend block is not in a molecule namespace" ); |
156 |
|
|
} |
157 |
|
|
else{ |
158 |
|
|
init_bend( the_node->index ); |
159 |
|
|
current_namespc.index = the_node->index; |
160 |
|
|
current_namespc.type = the_node->type; |
161 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
162 |
|
|
} |
163 |
|
|
break; |
164 |
|
|
|
165 |
|
|
case TORSION_HEAD: |
166 |
|
|
if( the_namespc.type != MOLECULE_HEAD ){ |
167 |
|
|
print_tree_error( the_node, |
168 |
|
|
"The torsion block is not in " |
169 |
|
|
"a molecule namespace" ); |
170 |
|
|
} |
171 |
|
|
else{ |
172 |
|
|
init_torsion( the_node->index ); |
173 |
|
|
current_namespc.index = the_node->index; |
174 |
|
|
current_namespc.type = the_node->type; |
175 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
176 |
|
|
} |
177 |
|
|
break; |
178 |
|
|
|
179 |
|
|
case ZCONSTRAINT_HEAD: |
180 |
|
|
if( the_namespc.type != GLOBAL_HEAD ){ |
181 |
|
|
print_tree_error( the_node, |
182 |
|
|
"The Zconstraint block is not in " |
183 |
|
|
"the global namespace" ); |
184 |
|
|
} |
185 |
|
|
else{ |
186 |
|
|
init_zconstraint( the_node->index ); |
187 |
|
|
current_namespc.index = the_node->index; |
188 |
|
|
current_namespc.type = the_node->type; |
189 |
|
|
walk_down( the_node->stmt_list, current_namespc ); |
190 |
|
|
} |
191 |
|
|
break; |
192 |
|
|
|
193 |
|
|
default: |
194 |
|
|
print_tree_error( the_node, "Not a valid code block" ); |
195 |
|
|
} |
196 |
|
|
} |
197 |
|
|
|
198 |
|
|
else{ |
199 |
|
|
|
200 |
|
|
// the node is a statement |
201 |
|
|
|
202 |
|
|
switch( the_node->type ){ |
203 |
|
|
|
204 |
|
|
case MEMBERS_STMT: |
205 |
|
|
switch( the_namespc.type ){ |
206 |
|
|
case BOND_HEAD: // fall through |
207 |
|
|
case BEND_HEAD: // fall through |
208 |
|
|
case TORSION_HEAD: |
209 |
|
|
case RIGIDBODY_HEAD: |
210 |
|
|
case CUTOFFGROUP_HEAD: // same for the first four |
211 |
|
|
init_members( the_node, the_namespc ); |
212 |
|
|
break; |
213 |
|
|
|
214 |
|
|
default: |
215 |
|
|
print_tree_error( the_node, |
216 |
|
|
"Members statement not in a bond, bend, " |
217 |
|
|
"torsion, RigidBody, or CutoffGroup" ); |
218 |
|
|
break; |
219 |
|
|
} |
220 |
|
|
break; |
221 |
|
|
|
222 |
|
|
case CONSTRAINT_STMT: |
223 |
|
|
switch( the_namespc.type ){ |
224 |
|
|
case BOND_HEAD: // fall through |
225 |
|
|
case BEND_HEAD: // fall through |
226 |
|
|
case TORSION_HEAD: // same for the first three |
227 |
|
|
init_constraint( the_node, the_namespc ); |
228 |
|
|
break; |
229 |
|
|
|
230 |
|
|
default: |
231 |
|
|
print_tree_error( the_node, |
232 |
|
|
"Constraint statement not in a bond, bend, " |
233 |
|
|
"or torsion" ); |
234 |
|
|
break; |
235 |
|
|
} |
236 |
|
|
break; |
237 |
|
|
|
238 |
|
|
case ASSIGNMENT_STMT: |
239 |
|
|
init_assignment( the_node, the_namespc ); |
240 |
|
|
break; |
241 |
|
|
|
242 |
|
|
case POSITION_STMT: |
243 |
|
|
if( the_namespc.type != ATOM_HEAD ){ |
244 |
|
|
print_tree_error( the_node, |
245 |
|
|
"position statement is not located in an " |
246 |
|
|
"atom block" ); |
247 |
|
|
} |
248 |
|
|
|
249 |
|
|
init_position( the_node, the_namespc ); |
250 |
|
|
break; |
251 |
|
|
|
252 |
|
|
case ORIENTATION_STMT: |
253 |
|
|
if( the_namespc.type != ATOM_HEAD ){ |
254 |
|
|
print_tree_error( the_node, |
255 |
|
|
"orientation statement is not located in an " |
256 |
|
|
"atom block" ); |
257 |
|
|
} |
258 |
|
|
|
259 |
|
|
init_orientation( the_node, the_namespc ); |
260 |
|
|
break; |
261 |
|
|
|
262 |
|
|
default: |
263 |
|
|
print_tree_error( the_node, "unrecognized statement" ); |
264 |
|
|
break; |
265 |
|
|
} |
266 |
|
|
} |
267 |
|
|
|
268 |
|
|
// recurse down to the next node |
269 |
|
|
|
270 |
|
|
walk_down( the_node->next_stmt, the_namespc ); |
271 |
|
|
} |
272 |
|
|
|
273 |
|
|
// send an end of block signal |
274 |
|
|
else end_of_block(); |
275 |
|
|
|
276 |
|
|
// we're done |
277 |
|
|
} |
278 |
|
|
|
279 |
|
|
|
280 |
|
|
|
281 |
|
|
/* |
282 |
|
|
* This is a routine utilized by the node parsers to make printing |
283 |
|
|
* error messages easy. |
284 |
|
|
*/ |
285 |
|
|
|
286 |
|
|
void print_tree_error( struct node_tag* err_node, char* err_msg ){ |
287 |
|
|
|
288 |
|
|
switch( err_node->type ){ |
289 |
|
|
|
290 |
|
|
case GLOBAL_HEAD: |
291 |
|
|
sprintf( painCave.errMsg, |
292 |
|
|
"Parse tree error: global head node error -> %s\n", |
293 |
|
|
err_msg ); |
294 |
|
|
break; |
295 |
|
|
|
296 |
|
|
case COMPONENT_HEAD: |
297 |
|
|
sprintf( painCave.errMsg, |
298 |
|
|
"Parse tree error: component head node error -> %s\n", |
299 |
|
|
err_msg ); |
300 |
|
|
break; |
301 |
|
|
|
302 |
|
|
case MOLECULE_HEAD: |
303 |
|
|
sprintf( painCave.errMsg, |
304 |
|
|
"Parse tree error: molecule head node error -> %s\n", |
305 |
|
|
err_msg ); |
306 |
|
|
break; |
307 |
|
|
|
308 |
|
|
case RIGIDBODY_HEAD: |
309 |
|
|
sprintf( painCave.errMsg, |
310 |
|
|
"Parse tree error: rigidBody head node error -> %s\n", |
311 |
|
|
err_msg ); |
312 |
|
|
break; |
313 |
|
|
|
314 |
|
|
case CUTOFFGROUP_HEAD: |
315 |
|
|
sprintf( painCave.errMsg, |
316 |
|
|
"Parse tree error: CutoffGroup head node error -> %s\n", |
317 |
|
|
err_msg ); |
318 |
|
|
break; |
319 |
|
|
|
320 |
|
|
case ATOM_HEAD: |
321 |
|
|
sprintf( painCave.errMsg, |
322 |
|
|
"Parse tree error: atom head node error [%d] -> %s\n", |
323 |
|
|
err_node->index, |
324 |
|
|
err_msg ); |
325 |
|
|
break; |
326 |
|
|
|
327 |
|
|
case BOND_HEAD: |
328 |
|
|
sprintf( painCave.errMsg, |
329 |
|
|
"Parse tree error: bond head node error [%d] -> %s\n", |
330 |
|
|
err_node->index, |
331 |
|
|
err_msg ); |
332 |
|
|
break; |
333 |
|
|
|
334 |
|
|
case BEND_HEAD: |
335 |
|
|
sprintf( painCave.errMsg, |
336 |
|
|
"Parse tree error: bend head node error [%d] -> %s\n", |
337 |
|
|
err_node->index, |
338 |
|
|
err_msg ); |
339 |
|
|
break; |
340 |
|
|
|
341 |
|
|
case ZCONSTRAINT_HEAD: |
342 |
|
|
sprintf( painCave.errMsg, |
343 |
|
|
"Parse tree error: Zconstraint head node error [%d] -> %s\n", |
344 |
|
|
err_node->index, |
345 |
|
|
err_msg ); |
346 |
|
|
break; |
347 |
|
|
|
348 |
|
|
case MEMBERS_STMT: |
349 |
|
|
sprintf( painCave.errMsg, |
350 |
|
|
"Parse tree error: members node error (nMembers = %d)\n" |
351 |
|
|
" -> %s\n", |
352 |
|
|
err_node->the_data.mbrs.nMembers, |
353 |
|
|
err_msg ); |
354 |
|
|
break; |
355 |
|
|
|
356 |
|
|
case CONSTRAINT_STMT: |
357 |
|
|
sprintf( painCave.errMsg, |
358 |
|
|
"Parse tree error: constraint node error => ( %lf )\n" |
359 |
|
|
" -> %s\n", |
360 |
|
|
err_node->the_data.cnstr.constraint_val, |
361 |
|
|
err_msg ); |
362 |
|
|
break; |
363 |
|
|
|
364 |
|
|
case ASSIGNMENT_STMT: |
365 |
|
|
sprintf( painCave.errMsg, |
366 |
|
|
"Parse tree error: assignment node error\n" |
367 |
|
|
" => %s = ", |
368 |
|
|
err_node->the_data.asmt.identifier ); |
369 |
|
|
|
370 |
|
|
switch( err_node->the_data.asmt.type ){ |
371 |
|
|
|
372 |
|
|
case STR_ASSN: |
373 |
|
|
sprintf( painCave.errMsg, |
374 |
|
|
"%s", |
375 |
|
|
err_node->the_data.asmt.rhs.str_ptr ); |
376 |
|
|
break; |
377 |
|
|
|
378 |
|
|
case INT_ASSN: |
379 |
|
|
sprintf( painCave.errMsg, |
380 |
|
|
"%d", |
381 |
|
|
err_node->the_data.asmt.rhs.i_val ); |
382 |
|
|
break; |
383 |
|
|
|
384 |
|
|
case DOUBLE_ASSN: |
385 |
|
|
sprintf( painCave.errMsg, |
386 |
|
|
"%lf", |
387 |
|
|
err_node->the_data.asmt.rhs.d_val ); |
388 |
|
|
break; |
389 |
|
|
} |
390 |
|
|
|
391 |
|
|
sprintf( painCave.errMsg, |
392 |
|
|
"\n" |
393 |
|
|
" -> %s\n", |
394 |
|
|
err_msg ); |
395 |
|
|
break; |
396 |
|
|
|
397 |
|
|
case POSITION_STMT: |
398 |
|
|
sprintf( painCave.errMsg, |
399 |
|
|
"Parse tree error: position node error => ( %lf, %lf, %lf )\n" |
400 |
|
|
" -> %s\n", |
401 |
|
|
err_node->the_data.pos.x, |
402 |
|
|
err_node->the_data.pos.y, |
403 |
|
|
err_node->the_data.pos.z, |
404 |
|
|
err_msg ); |
405 |
|
|
break; |
406 |
|
|
|
407 |
|
|
case ORIENTATION_STMT: |
408 |
|
|
sprintf( painCave.errMsg, |
409 |
|
|
"Parse tree error: orientation node error => ( %lf, %lf, %lf )\n" |
410 |
|
|
" -> %s\n", |
411 |
|
|
err_node->the_data.ort.phi, |
412 |
|
|
err_node->the_data.ort.theta, |
413 |
|
|
err_node->the_data.ort.psi, |
414 |
|
|
err_msg ); |
415 |
|
|
break; |
416 |
|
|
|
417 |
|
|
default: |
418 |
|
|
sprintf( painCave.errMsg, |
419 |
|
|
"Parse tree error: unknown node type -> %s\n", |
420 |
|
|
err_msg ); |
421 |
|
|
} |
422 |
|
|
|
423 |
|
|
painCave.isFatal = 1; |
424 |
|
|
simError(); |
425 |
|
|
#ifdef IS_MPI |
426 |
|
|
mpiInterfaceExit(); |
427 |
|
|
#endif //is_mpi |
428 |
|
|
|
429 |
|
|
} |
430 |
|
|
|
431 |
|
|
|
432 |
|
|
/* |
433 |
|
|
* recursive walkdown and kill of the node tree |
434 |
|
|
* note: looks mighty similar to the walkdown routine. |
435 |
|
|
*/ |
436 |
|
|
|
437 |
|
|
void kill_tree( struct node_tag* the_node ){ |
438 |
|
|
|
439 |
|
|
|
440 |
|
|
if( the_node != NULL ){ |
441 |
|
|
|
442 |
|
|
if( the_node->stmt_list != NULL ){ |
443 |
|
|
|
444 |
|
|
// the statement is a block node of some sort |
445 |
|
|
|
446 |
|
|
kill_tree( the_node->stmt_list ); |
447 |
|
|
} |
448 |
|
|
|
449 |
|
|
else{ |
450 |
|
|
|
451 |
|
|
// the node is a statement |
452 |
|
|
|
453 |
|
|
switch( the_node->type ){ |
454 |
|
|
|
455 |
|
|
case ASSIGNMENT_STMT: |
456 |
|
|
|
457 |
|
|
if( the_node->the_data.asmt.type == STR_ASSN ) |
458 |
|
|
free( the_node->the_data.asmt.rhs.str_ptr ); |
459 |
|
|
|
460 |
|
|
free( the_node->the_data.asmt.identifier ); |
461 |
|
|
break; |
462 |
|
|
|
463 |
|
|
default: |
464 |
|
|
// nothing to do here, everyone else can be freed normally. |
465 |
|
|
break; |
466 |
|
|
} |
467 |
|
|
} |
468 |
|
|
|
469 |
|
|
// recurse down to the next node |
470 |
|
|
|
471 |
|
|
kill_tree( the_node->next_stmt ); |
472 |
|
|
free( the_node ); |
473 |
|
|
} |
474 |
|
|
|
475 |
|
|
// we're done |
476 |
|
|
} |