src/io/StatWriter.cpp

/*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */
 
#define _LARGEFILE_SOURCE64
#define _FILE_OFFSET_BITS 64

#include "io/StatWriter.hpp"
#include "utils/simError.h"

namespace oopse {
  StatsBitSet parseStatFileFormat(const std::string& format) {
    StringTokenizer tokenizer(format, " ,;|\t\n\r");
    StatsBitSet mask;
    while(tokenizer.hasMoreTokens()) {
        std::string token(tokenizer.nextToken());
        toUpper(token);
        Stats::StatsMapType::iterator i = Stats::statsMap.find(token);
        if (i != Stats::statsMap.end()) {
            mask.set(i->second);
        } else {
          sprintf( painCave.errMsg,
                       "%s is not a valid statFileFormat keyword.\n", token.c_str() );
          painCave.isFatal = 0;
          painCave.severity = OOPSE_ERROR;
          simError();            
        }
    }
    
    return mask;
  }
  
  StatWriter::StatWriter( const std::string& filename, const StatsBitSet& mask) : mask_(mask){

#ifdef IS_MPI
    if(worldRank == 0 ){
#endif // is_mpi

      statfile_.open(filename.c_str(), std::ios::out | std::ios::trunc );
    
      if( !statfile_ ){
      
        sprintf( painCave.errMsg,
                 "Could not open \"%s\" for stat output.\n",
                 filename.c_str());
        painCave.isFatal = 1;
        simError();
      }

      writeTitle();
    
#ifdef IS_MPI
    }

    sprintf( checkPointMsg,
             "Sucessfully opened output file for stating.\n");
    errorCheckPoint();
#endif // is_mpi

  }

  StatWriter::~StatWriter( ){

#ifdef IS_MPI
    if(worldRank == 0 ){
#endif // is_mpi

      statfile_.close();

#ifdef IS_MPI
    }
#endif // is_mpi
  }

  void StatWriter::writeTitle() {


#ifdef IS_MPI
    if(worldRank == 0 ){
#endif // is_mpi

      //write title
      statfile_ << "#";
      for (int i =0; i < mask_.size(); ++i) {
        if (mask_[i]) {
          statfile_ << "\t" << Stats::getTitle(i) << "(" << Stats::getUnits(i) << ")";
        }
      }
      statfile_ << std::endl;

#ifdef IS_MPI
    }
#endif // is_mpi    
  }

  void StatWriter::writeStat(const Stats& s){

#ifdef IS_MPI
    if(worldRank == 0 ){
#endif // is_mpi

      statfile_.precision(8);

      for (int i =0; i < mask_.size(); ++i) {
        if (mask_[i]) {
          statfile_ << "\t" << s[i];
        }
      }
      statfile_ << std::endl;

      statfile_.flush();

#ifdef IS_MPI
    }
#endif // is_mpi
  }

}
Revision:	1241
Committed:	Fri Apr 25 15:14:47 2008 UTC (17 years ago) by gezelter
File size:	4338 byte(s)
Log Message:	A bunch of minor changes to make MPI compilation faster than the double compilation we do now...
#	User	Rev	Content
1	gezelter	507	/*
2	gezelter	246	* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41
42	gezelter	2	#define _LARGEFILE_SOURCE64
43			#define _FILE_OFFSET_BITS 64
44
45	gezelter	246	#include "io/StatWriter.hpp"
46	tim	3	#include "utils/simError.h"
47	gezelter	2
48	gezelter	246	namespace oopse {
49	tim	681	StatsBitSet parseStatFileFormat(const std::string& format) {
50			StringTokenizer tokenizer(format, " ,;\|\t\n\r");
51			StatsBitSet mask;
52			while(tokenizer.hasMoreTokens()) {
53			std::string token(tokenizer.nextToken());
54			toUpper(token);
55			Stats::StatsMapType::iterator i = Stats::statsMap.find(token);
56			if (i != Stats::statsMap.end()) {
57			mask.set(i->second);
58			} else {
59			sprintf( painCave.errMsg,
60			"%s is not a valid statFileFormat keyword.\n", token.c_str() );
61			painCave.isFatal = 0;
62			painCave.severity = OOPSE_ERROR;
63			simError();
64			}
65			}
66
67			return mask;
68			}
69
70	gezelter	507	StatWriter::StatWriter( const std::string& filename, const StatsBitSet& mask) : mask_(mask){
71	gezelter	2
72			#ifdef IS_MPI
73	gezelter	507	if(worldRank == 0 ){
74	gezelter	2	#endif // is_mpi
75
76	gezelter	507	statfile_.open(filename.c_str(), std::ios::out \| std::ios::trunc );
77	gezelter	2
78	gezelter	507	if( !statfile_ ){
79	gezelter	2
80	gezelter	507	sprintf( painCave.errMsg,
81			"Could not open \"%s\" for stat output.\n",
82			filename.c_str());
83			painCave.isFatal = 1;
84			simError();
85			}
86	gezelter	2
87	gezelter	507	writeTitle();
88	gezelter	2
89			#ifdef IS_MPI
90	gezelter	507	}
91	gezelter	2
92	gezelter	507	sprintf( checkPointMsg,
93			"Sucessfully opened output file for stating.\n");
94	gezelter	1241	errorCheckPoint();
95	gezelter	2	#endif // is_mpi
96
97	gezelter	507	}
98	gezelter	2
99	gezelter	507	StatWriter::~StatWriter( ){
100	gezelter	2
101			#ifdef IS_MPI
102	gezelter	507	if(worldRank == 0 ){
103	gezelter	2	#endif // is_mpi
104
105	gezelter	507	statfile_.close();
106	gezelter	2
107			#ifdef IS_MPI
108	gezelter	507	}
109			#endif // is_mpi
110	gezelter	2	}
111
112	gezelter	507	void StatWriter::writeTitle() {
113	gezelter	2
114
115	gezelter	246	#ifdef IS_MPI
116			if(worldRank == 0 ){
117			#endif // is_mpi
118	gezelter	2
119	gezelter	507	//write title
120			statfile_ << "#";
121			for (int i =0; i < mask_.size(); ++i) {
122			if (mask_[i]) {
123			statfile_ << "\t" << Stats::getTitle(i) << "(" << Stats::getUnits(i) << ")";
124			}
125			}
126			statfile_ << std::endl;
127	gezelter	246
128	gezelter	2	#ifdef IS_MPI
129	gezelter	507	}
130			#endif // is_mpi
131	gezelter	246	}
132
133	gezelter	507	void StatWriter::writeStat(const Stats& s){
134	gezelter	246
135			#ifdef IS_MPI
136			if(worldRank == 0 ){
137	gezelter	2	#endif // is_mpi
138
139	gezelter	507	statfile_.precision(8);
140	gezelter	2
141	gezelter	507	for (int i =0; i < mask_.size(); ++i) {
142			if (mask_[i]) {
143			statfile_ << "\t" << s[i];
144			}
145			}
146			statfile_ << std::endl;
147	gezelter	2
148	gezelter	507	statfile_.flush();
149	gezelter	2
150			#ifdef IS_MPI
151	gezelter	246	}
152	gezelter	2	#endif // is_mpi
153	gezelter	507	}
154	gezelter	2
155	gezelter	246	}