src/io/SectionParserManager.cpp

 /*
 * Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
 *
 * The University of Notre Dame grants you ("Licensee") a
 * non-exclusive, royalty free, license to use, modify and
 * redistribute this software in source and binary code form, provided
 * that the following conditions are met:
 *
 * 1. Acknowledgement of the program authors must be made in any
 *    publication of scientific results based in part on use of the
 *    program.  An acceptable form of acknowledgement is citation of
 *    the article in which the program was described (Matthew
 *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
 *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
 *    Parallel Simulation Engine for Molecular Dynamics,"
 *    J. Comput. Chem. 26, pp. 252-271 (2005))
 *
 * 2. Redistributions of source code must retain the above copyright
 *    notice, this list of conditions and the following disclaimer.
 *
 * 3. Redistributions in binary form must reproduce the above copyright
 *    notice, this list of conditions and the following disclaimer in the
 *    documentation and/or other materials provided with the
 *    distribution.
 *
 * This software is provided "AS IS," without a warranty of any
 * kind. All express or implied conditions, representations and
 * warranties, including any implied warranty of merchantability,
 * fitness for a particular purpose or non-infringement, are hereby
 * excluded.  The University of Notre Dame and its licensors shall not
 * be liable for any damages suffered by licensee as a result of
 * using, modifying or distributing the software or its
 * derivatives. In no event will the University of Notre Dame or its
 * licensors be liable for any lost revenue, profit or data, or for
 * direct, indirect, special, consequential, incidental or punitive
 * damages, however caused and regardless of the theory of liability,
 * arising out of the use of or inability to use software, even if the
 * University of Notre Dame has been advised of the possibility of
 * such damages.
 */
#include <algorithm> 
#include "io/SectionParserManager.hpp"
#include "utils/Trim.hpp"

namespace oopse {

SectionParserManager::~SectionParserManager() {
    SectionParserManager::iterator i;
    for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
        delete (i->sectionParser);
    }
    sectionParsers_.clear();
}

void SectionParserManager::parse(std::istream& input, ForceField& ff) {

    //reset active flags
    SectionParserManager::iterator i;
    for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
        i->isActive = false;
    }

    const int bufferSize = 65535;
    char buffer[bufferSize];
    int lineNo = 0;
    //scan through the input stream and find section names        
    while(input.getline(buffer, bufferSize)) {
        ++lineNo;
        
        std::string line = trimLeftCopy(buffer);
        //a line begins with "//" is comment
        if ( line.empty() || (line.size() >= 2 && line[0] == '/' && line[1] == '/')) {
            continue;
        } else {        
            StringTokenizer tokenizer(line);
            if (tokenizer.countTokens() < 2) {
                continue;
            } else {
                std::string keyword = tokenizer.nextToken();

                if (keyword != "begin") {
                    continue;
                }

                std::string section = tokenizer.nextToken();

                i = std::find_if(sectionParsers_.begin(), sectionParsers_.end(), SameSectionParserFunctor(section));
                if (i == sectionParsers_.end()){
                    //can not find corresponding section parser
                    std::cerr << "Can not find corresponding section parser for section: " << section << std::endl;
                } else {
                    i->isActive = true;
                    i->lineNo = lineNo;
                    i->offset = input.tellg();
                }
                
            }
        }

        
    }

    //invoke parser
    for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
        if (i->isActive) {
            //C++ standard does not guarantee seekg  reset EOF, in that case, seekg will fail
            //It is always a good idea to call clear() before seek
            input.clear();            
            input.seekg(i->offset);
            (i->sectionParser)->parse(input, ff, i->lineNo);
        }
    }
    
}

void SectionParserManager::push_front(SectionParser* sp) {
    SectionParserManager::iterator i;
    i = findSectionParser(sp->getSectionName());
    if (i != sectionParsers_.end()) {
        std::cerr << sp->getSectionName() << " section parser is alway existed" << std::endl;
        return;
    }
    
    SectionParserContext context;
    
    if (sectionParsers_.empty()) {
        context.priority = beginPriority_;
    } else {
        context.priority = sectionParsers_.front().priority - priorityDifference_;
    }

    context.sectionParser = sp;
    context.lineNo = 0;
    context.offset = 0;
    context.isActive = false;

    sectionParsers_.push_front(context);
}

void SectionParserManager::push_back(SectionParser* sp) {
    SectionParserManager::iterator i;
    i = findSectionParser(sp->getSectionName());
    if (i != sectionParsers_.end()) {
        std::cerr << sp->getSectionName() << " section parser is alway existed" << std::endl;
        return;
    }

    SectionParserContext context;    
    if (sectionParsers_.empty()) {
        context.priority = beginPriority_;
    } else {
        context.priority = sectionParsers_.back().priority + priorityDifference_;
    }

    context.sectionParser = sp;
    context.lineNo = 0;
    context.offset = 0;
    context.isActive = false;

    sectionParsers_.push_back(context);

}

void SectionParserManager::insert(SectionParser* sp, int priority) {
    SectionParserManager::iterator i;
    i = findSectionParser(sp->getSectionName());
    if (i != sectionParsers_.end()) {
        std::cerr << sp->getSectionName() << " section parser is alway existed" << std::endl;
    }

    SectionParserContext context;    
    context.priority = priority;
    context.sectionParser = sp;
    context.lineNo = 0;
    context.offset = 0;
    context.isActive = false;

    if (sectionParsers_.empty()) {
        sectionParsers_.push_back(context);
    } else {

        for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
            if (i->priority == priority) {
                 std::cerr << "Priority " << priority << " already used" << std::endl;
                 return;
            } else if (i->priority > priority) {
                sectionParsers_.insert(i, context);
                break;
            }
            
        }
    }

}


SectionParserManager::iterator SectionParserManager::findSectionParser(const std::string& sectionName) {
    SectionParserManager::iterator i;
    for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
        if (i->sectionParser->getSectionName() == sectionName) {
            break;
        }
    }

    return i;
}

}
Revision:	246
Committed:	Wed Jan 12 22:41:40 2005 UTC (20 years, 3 months ago) by gezelter
File size:	7143 byte(s)
Log Message:	merging new_design branch into OOPSE-2.0
#	User	Rev	Content
1	gezelter	246	/*
2			* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved.
3			*
4			* The University of Notre Dame grants you ("Licensee") a
5			* non-exclusive, royalty free, license to use, modify and
6			* redistribute this software in source and binary code form, provided
7			* that the following conditions are met:
8			*
9			* 1. Acknowledgement of the program authors must be made in any
10			* publication of scientific results based in part on use of the
11			* program. An acceptable form of acknowledgement is citation of
12			* the article in which the program was described (Matthew
13			* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14			* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15			* Parallel Simulation Engine for Molecular Dynamics,"
16			* J. Comput. Chem. 26, pp. 252-271 (2005))
17			*
18			* 2. Redistributions of source code must retain the above copyright
19			* notice, this list of conditions and the following disclaimer.
20			*
21			* 3. Redistributions in binary form must reproduce the above copyright
22			* notice, this list of conditions and the following disclaimer in the
23			* documentation and/or other materials provided with the
24			* distribution.
25			*
26			* This software is provided "AS IS," without a warranty of any
27			* kind. All express or implied conditions, representations and
28			* warranties, including any implied warranty of merchantability,
29			* fitness for a particular purpose or non-infringement, are hereby
30			* excluded. The University of Notre Dame and its licensors shall not
31			* be liable for any damages suffered by licensee as a result of
32			* using, modifying or distributing the software or its
33			* derivatives. In no event will the University of Notre Dame or its
34			* licensors be liable for any lost revenue, profit or data, or for
35			* direct, indirect, special, consequential, incidental or punitive
36			* damages, however caused and regardless of the theory of liability,
37			* arising out of the use of or inability to use software, even if the
38			* University of Notre Dame has been advised of the possibility of
39			* such damages.
40			*/
41			#include <algorithm>
42			#include "io/SectionParserManager.hpp"
43			#include "utils/Trim.hpp"
44
45			namespace oopse {
46
47			SectionParserManager::~SectionParserManager() {
48			SectionParserManager::iterator i;
49			for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
50			delete (i->sectionParser);
51			}
52			sectionParsers_.clear();
53			}
54
55			void SectionParserManager::parse(std::istream& input, ForceField& ff) {
56
57			//reset active flags
58			SectionParserManager::iterator i;
59			for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
60			i->isActive = false;
61			}
62
63			const int bufferSize = 65535;
64			char buffer[bufferSize];
65			int lineNo = 0;
66			//scan through the input stream and find section names
67			while(input.getline(buffer, bufferSize)) {
68			++lineNo;
69
70			std::string line = trimLeftCopy(buffer);
71			//a line begins with "//" is comment
72			if ( line.empty() \|\| (line.size() >= 2 && line[0] == '/' && line[1] == '/')) {
73			continue;
74			} else {
75			StringTokenizer tokenizer(line);
76			if (tokenizer.countTokens() < 2) {
77			continue;
78			} else {
79			std::string keyword = tokenizer.nextToken();
80
81			if (keyword != "begin") {
82			continue;
83			}
84
85			std::string section = tokenizer.nextToken();
86
87			i = std::find_if(sectionParsers_.begin(), sectionParsers_.end(), SameSectionParserFunctor(section));
88			if (i == sectionParsers_.end()){
89			//can not find corresponding section parser
90			std::cerr << "Can not find corresponding section parser for section: " << section << std::endl;
91			} else {
92			i->isActive = true;
93			i->lineNo = lineNo;
94			i->offset = input.tellg();
95			}
96
97			}
98			}
99
100
101			}
102
103			//invoke parser
104			for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
105			if (i->isActive) {
106			//C++ standard does not guarantee seekg reset EOF, in that case, seekg will fail
107			//It is always a good idea to call clear() before seek
108			input.clear();
109			input.seekg(i->offset);
110			(i->sectionParser)->parse(input, ff, i->lineNo);
111			}
112			}
113
114			}
115
116			void SectionParserManager::push_front(SectionParser* sp) {
117			SectionParserManager::iterator i;
118			i = findSectionParser(sp->getSectionName());
119			if (i != sectionParsers_.end()) {
120			std::cerr << sp->getSectionName() << " section parser is alway existed" << std::endl;
121			return;
122			}
123
124			SectionParserContext context;
125
126			if (sectionParsers_.empty()) {
127			context.priority = beginPriority_;
128			} else {
129			context.priority = sectionParsers_.front().priority - priorityDifference_;
130			}
131
132			context.sectionParser = sp;
133			context.lineNo = 0;
134			context.offset = 0;
135			context.isActive = false;
136
137			sectionParsers_.push_front(context);
138			}
139
140			void SectionParserManager::push_back(SectionParser* sp) {
141			SectionParserManager::iterator i;
142			i = findSectionParser(sp->getSectionName());
143			if (i != sectionParsers_.end()) {
144			std::cerr << sp->getSectionName() << " section parser is alway existed" << std::endl;
145			return;
146			}
147
148			SectionParserContext context;
149			if (sectionParsers_.empty()) {
150			context.priority = beginPriority_;
151			} else {
152			context.priority = sectionParsers_.back().priority + priorityDifference_;
153			}
154
155			context.sectionParser = sp;
156			context.lineNo = 0;
157			context.offset = 0;
158			context.isActive = false;
159
160			sectionParsers_.push_back(context);
161
162			}
163
164			void SectionParserManager::insert(SectionParser* sp, int priority) {
165			SectionParserManager::iterator i;
166			i = findSectionParser(sp->getSectionName());
167			if (i != sectionParsers_.end()) {
168			std::cerr << sp->getSectionName() << " section parser is alway existed" << std::endl;
169			}
170
171			SectionParserContext context;
172			context.priority = priority;
173			context.sectionParser = sp;
174			context.lineNo = 0;
175			context.offset = 0;
176			context.isActive = false;
177
178			if (sectionParsers_.empty()) {
179			sectionParsers_.push_back(context);
180			} else {
181
182			for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
183			if (i->priority == priority) {
184			std::cerr << "Priority " << priority << " already used" << std::endl;
185			return;
186			} else if (i->priority > priority) {
187			sectionParsers_.insert(i, context);
188			break;
189			}
190
191			}
192			}
193
194			}
195
196
197			SectionParserManager::iterator SectionParserManager::findSectionParser(const std::string& sectionName) {
198			SectionParserManager::iterator i;
199			for (i = sectionParsers_.begin(); i != sectionParsers_.end(); ++i) {
200			if (i->sectionParser->getSectionName() == sectionName) {
201			break;
202			}
203			}
204
205			return i;
206			}
207
208			}