Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Bug fixes in the SelectionEvaluator and SelectionCompiler Added print option in Restraints
Added new restraint infrastructure Added MolecularRestraints Added ObjectRestraints Added RestraintStamp Updated thermodynamic integration to use ObjectRestraints Added Quaternion mathematics for twist swing decompositions Significantly updated RestWriter and RestReader to use dump-like files Added selections for x, y, and z coordinates of atoms Removed monolithic Restraints class Fixed a few bugs in gradients of Euler angles in DirectionalAtom and RigidBody Added some rotational capabilities to prinicpalAxisCalculator
fixed TI MPI bug
MPI thermodynamic integration works now.
fixes for mpi thermodynamic integration, close to fully working...
Adding single precision capabilities to c++ side
xemacs has been drafted to perform our indentation services
Oops... MPI now builds...
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