Updating MPI calls to C++, fixing a DumpWriter bug, cleaning cruft
MERGE OpenMD development branch 1465:1781 into trunk
Adding property set to svn entries
fixed a typo
Removed hard-wired atom number, trying out the NULL returns in SimInfo.
Fixed bugs in Restraint, refactored RestReader and RestWriter
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Added new restraint infrastructure Added MolecularRestraints Added ObjectRestraints Added RestraintStamp Updated thermodynamic integration to use ObjectRestraints Added Quaternion mathematics for twist swing decompositions Significantly updated RestWriter and RestReader to use dump-like files Added selections for x, y, and z coordinates of atoms Removed monolithic Restraints class Fixed a few bugs in gradients of Euler angles in DirectionalAtom and RigidBody Added some rotational capabilities to prinicpalAxisCalculator
A bunch of minor changes to make MPI compilation faster than the double compilation we do now...
fixed TI MPI bug
more efficient file reading for thermodynamic integration, and fixed some formatting
fixes for mpi thermodynamic integration, close to fully working...
Fixed a spelling error and a bug in MPI Thermodynamic Integration on file read-in
Adding single precision capabilities to c++ side
xemacs has been drafted to perform our indentation services
fixed a bug in MPI restraints
Oops... MPI now builds...
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