131 |
|
DefineOptionalParameterWithDefaultValue(RNEMD_exchangeType, "RNEMD_exchangeType", "KineticScale"); |
132 |
|
DefineOptionalParameterWithDefaultValue(RNEMD_targetFlux, "RNEMD_targetFlux", 0.0); |
133 |
|
DefineOptionalParameterWithDefaultValue(RNEMD_objectSelection, "RNEMD_objectSelection", "select all"); |
134 |
+ |
DefineOptionalParameterWithDefaultValue(RNEMD_binShift, "RNEMD_binShift", false); |
135 |
+ |
DefineOptionalParameterWithDefaultValue(RNEMD_outputDimensionalTemperature, "RNEMD_outputDimensionalTemperature", false); |
136 |
|
DefineOptionalParameterWithDefaultValue(UseRestraints, "useRestraints", false); |
137 |
|
DefineOptionalParameterWithDefaultValue(Restraint_file, "Restraint_file", "idealCrystal.in"); |
138 |
|
DefineOptionalParameterWithDefaultValue(UseThermodynamicIntegration, "useThermodynamicIntegration", false); |
207 |
|
CheckParameter(RNEMD_exchangeTime, isPositive()); |
208 |
|
CheckParameter(RNEMD_nBins, isPositive() && isEven()); |
209 |
|
CheckParameter(RNEMD_exchangeType, isEqualIgnoreCase("KineticSwap") || isEqualIgnoreCase("KineticScale") || isEqualIgnoreCase("Px") || isEqualIgnoreCase("Py") || isEqualIgnoreCase("Pz") || isEqualIgnoreCase("PxScale") || isEqualIgnoreCase("PyScale") || isEqualIgnoreCase("PzScale")); |
210 |
< |
CheckParameter(RNEMD_targetFlux, isNonNegative()); |
210 |
> |
//CheckParameter(RNEMD_targetFlux, isNonNegative()); |
211 |
|
CheckParameter(HULL_Method, isEqualIgnoreCase("Convex") || isEqualIgnoreCase("AlphaShape")); |
212 |
|
CheckParameter(Alpha, isPositive()); |
213 |
|
|