more changes for 1-2, 1-3, 1-4 interactions plus some initialization-ordering fixes to make gcc -Wall happier.
Non-bonded interactions added.
refined the reaction field dielectric passing
Massive changes for GB code with multiple ellipsoid types (a la Cleaver's paper). Also, changes in hydrodynamics code to make HydroProp a somewhat smarter class (rather than just a struct).
Adding single precision capabilities to c++ side
replace isType<int> with isInteger
More Sutton-Chen bug fixes.
More changes to forcefield options.
Force option changes.
Fix parsing error in OptionSectionParser
Adding handler for CLAY force field
parsing by filepp
adding ForceFieldOptions
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