more changes for 1-2, 1-3, 1-4 interactions plus some initialization-ordering fixes to make gcc -Wall happier.
Non-bonded interactions added.
refined the reaction field dielectric passing
testing commit logger
removed printing of GBN and GBM from previous debugging
testing GB, removing CM drift in Langevin Dynamics, fixing a memory leak, adding a visitor
Massive changes for GB code with multiple ellipsoid types (a la Cleaver's paper). Also, changes in hydrodynamics code to make HydroProp a somewhat smarter class (rather than just a struct).
filepp can not handle multiple line macro, just convert multiple line macro into single line macro.
More Sutton-Chen bug fixes.
More changes to forcefield options.
Force option changes.
added copyright
Fix parsing error in OptionSectionParser
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