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root/OpenMD/trunk/src/io/DumpReader.cpp
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Comparing trunk/src/io/DumpReader.cpp (file contents):
Revision 1879 by gezelter, Sun Jun 16 15:15:42 2013 UTC vs.
Revision 1969 by gezelter, Wed Feb 26 14:14:50 2014 UTC

# Line 43 | Line 43
43   #define _LARGEFILE_SOURCE64
44   #define _FILE_OFFSET_BITS 64
45  
46 + #ifdef IS_MPI
47 + #include <mpi.h>
48 + #endif
49 +
50   #include <sys/types.h>
51   #include <sys/stat.h>
52  
# Line 59 | Line 63
63   #include "utils/MemoryUtils.hpp"
64   #include "utils/StringTokenizer.hpp"
65   #include "brains/Thermo.hpp"
62 –
63 – #ifdef IS_MPI
64 – #include <mpi.h>
65 – #endif
66  
67  
68   namespace OpenMD {
# Line 203 | Line 203 | namespace OpenMD {
203   #ifdef IS_MPI
204      }
205      
206 <    MPI::COMM_WORLD.Bcast(&nframes_, 1, MPI::INT, 0);
206 >    MPI_Bcast(&nframes_, 1, MPI_INT, 0, MPI_COMM_WORLD);
207      
208   #endif // is_mpi
209      
# Line 289 | Line 289 | namespace OpenMD {
289        }
290  
291        int sendBufferSize = sendBuffer.size();
292 <      MPI::COMM_WORLD.Bcast(&sendBufferSize, 1, MPI::INT, masterNode);    
293 <      MPI::COMM_WORLD.Bcast((void *)sendBuffer.c_str(), sendBufferSize,
294 <                            MPI::CHAR, masterNode);    
292 >      MPI_Bcast(&sendBufferSize, 1, MPI_INT, masterNode, MPI_COMM_WORLD);    
293 >      MPI_Bcast((void *)sendBuffer.c_str(), sendBufferSize,
294 >                MPI_CHAR, masterNode, MPI_COMM_WORLD);    
295        
296        sstream.str(sendBuffer);
297      } else {
298        int sendBufferSize;
299 <      MPI::COMM_WORLD.Bcast(&sendBufferSize, 1, MPI::INT, masterNode);
299 >      MPI_Bcast(&sendBufferSize, 1, MPI_INT, masterNode, MPI_COMM_WORLD);
300        char * recvBuffer = new char[sendBufferSize+1];
301        assert(recvBuffer);
302        recvBuffer[sendBufferSize] = '\0';
303 <      MPI::COMM_WORLD.Bcast(recvBuffer, sendBufferSize, MPI::CHAR, masterNode);
303 >      MPI_Bcast(recvBuffer, sendBufferSize, MPI_CHAR, masterNode, MPI_COMM_WORLD);
304        sstream.str(recvBuffer);
305        delete [] recvBuffer;
306      }      
# Line 520 | Line 520 | namespace OpenMD {
520  
521        }
522      }
523 –    
523    }
524    
525  
# Line 560 | Line 559 | namespace OpenMD {
559      if (i >> siteIndex) {
560        // chew up this token and parse as an int:
561        siteIndex = tokenizer.nextTokenAsInt();
562 <      RigidBody* rb = static_cast<RigidBody*>(sd);
563 <      sd = rb->getAtoms()[siteIndex];
562 >
563 >      if (sd->isRigidBody()) {
564 >        RigidBody* rb = static_cast<RigidBody*>(sd);
565 >        sd = rb->getAtoms()[siteIndex];
566 >      }
567      }
568  
569      /**

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