Fixed a clang compilation problem, added the ability to output particle potential in the dump files.
Added tests to make sure requisite position & orientation information are present in dump file.
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
General bug-fixes and other changes to make particle pots work with the Helfand Energy correlation function
Fixed a bug in BlockSnapshotManager.
A bunch of minor changes to make MPI compilation faster than the double compilation we do now...
Changes to add thetacorr to dynamic props and fixes to radial rcorr.
Adding the ability to compute Center of Mass properties on reading in a dump file. DumpReader must be told if it needs to do this, however.
fixed a DumpReader bug, took out extra printing statements in residentMem and BlockSnapshotManager
fixed some bugs in DumpWriter, eliminated some extra printing of debugging information
Massive changes preparing for release of OOPSE-4: The main difference is that the new MD file format (.md, .dump, .eor) now contains meta-data information along with the configuration information.
more efficient file reading for thermodynamic integration, and fixed some formatting
fixed some typos
Adding single precision capabilities to c++ side
Added a keyword and ability to output forces and torques
tracking down quaternion bug
fix a typo in DumpReader
DumpReader using pure c++ io
Fix a bug in DumpReader in case readFrame is called without calling getNFrames
xemacs has been drafted to perform our indentation services
First commit of the new restraints code
Fixing a bug in BitSet.cpp
adding MersenneTwister random number generator
adding dynamicProps
fix a bug in SimInfo, use number of cutoff stamp as counter to loop over rigidbody stamp
(1) complete section parser's error message (2) add GhostTorsion (3) accumulate inertial tensor from the directional atoms before calculate rigidbody's inertial tensor
merging new_design branch into OOPSE-2.0
replace old GebericData with new GenericData
change the #include in source files
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