Added a getStatus routine to check the temperatures
Adding RNEMD
Added some logic to print out a special pair distance as a column in the stat file. To use this feature, use taggedAtomPair = "0, 10" and printTaggedPairDistance = "true" in the md file. Then, the distance between integrableObjects 0 and 10 will be computed and printed in the stat file on each statWrite.
Massive update to do virials (both atomic and cutoff-group) correctly. The rigid body constraint contributions had been missing and this was masked by the use of cutoff groups...
fixes to zang writing
Added simulation box dipole moment accumulation for the purposes of calculating dielectric constants
MPI thermodynamic integration works now.
Adding single precision capabilities to c++ side
Got rid of spurious printing out of timestep
End of the Link --> List Return of the Oject-Oriented replace yacc/lex parser with antlr parser
OptionSectionParser get compiled
Customized StatWriter is working
adding resetIntegrator
Fix to print pressure tensor.
adding keyword printPressureTensor
xemacs has been drafted to perform our indentation services
minor change to TI output
First commit of the new restraints code
adding basic_teebuf which can operate on multiple stream simutaneously.
fix a bug in VelocityVerletIntegrator : last frame is written twice
dynamicProps get built
forget to add eorWriter
merging new_design branch into OOPSE-2.0
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