Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Changes for implementing Amber force field: Added Inversions and worked on BaseAtomTypes so that they'd function with the fortran side.
Adding single precision capabilities to c++ side
rewrite Globals
adding resetIntegrator
xemacs has been drafted to perform our indentation services
fix a bug in loading initial extended system parameters
forget to set maxIterNum_ in NVT
merging new_design branch into OOPSE-2.0
replace old GebericData with new GenericData
change the #include in source files
Import of OOPSE v. 2.0
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