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#include "brains/ForceManager.hpp" |
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#include "primitives/Molecule.hpp" |
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#include "math/SeqRandNumGen.hpp" |
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+ |
#include "hydrodynamics/Shape.hpp" |
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+ |
#include "integrators/Velocitizer.hpp" |
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|
| 51 |
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namespace oopse { |
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< |
|
| 53 |
< |
|
| 54 |
< |
struct HydroProp{ |
| 55 |
< |
Vector3d cor; |
| 56 |
< |
Mat3x3d Xirtt; |
| 57 |
< |
Mat3x3d Xirrt; //Xirrt == Xirtr |
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< |
Mat3x3d Xirtr; |
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< |
Mat3x3d Xirrr; |
| 58 |
< |
Mat6x6d S; |
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< |
}; |
| 60 |
< |
|
| 52 |
> |
|
| 53 |
> |
struct SDShape{ |
| 54 |
> |
StuntDouble* sd; |
| 55 |
> |
Shape* shape; |
| 56 |
> |
}; |
| 57 |
> |
|
| 58 |
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/** |
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* @class LDForceManager |
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< |
* Force manager for Lagevin Dynamics applying friction and random forces as well as torques. |
| 60 |
> |
* Force manager for Lagevin Dynamics applying friction and random |
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> |
* forces as well as torques. |
| 62 |
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*/ |
| 63 |
< |
class LDForceManager : public ForceManager{ |
| 64 |
< |
|
| 63 |
> |
class LDForceManager : public ForceManager{ |
| 64 |
> |
|
| 65 |
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public: |
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LDForceManager(SimInfo * info); |
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< |
|
| 67 |
> |
|
| 68 |
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protected: |
| 69 |
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virtual void postCalculation(); |
| 70 |
< |
|
| 69 |
> |
virtual void postCalculation(bool needStress); |
| 70 |
> |
|
| 71 |
|
private: |
| 72 |
< |
std::map<std::string, HydroProp> parseFrictionFile(const std::string& filename); |
| 73 |
< |
void genRandomForceAndTorque(Vector3d& force, Vector3d& torque, unsigned int index, double variance); |
| 74 |
< |
std::vector<HydroProp> hydroProps_; |
| 72 |
> |
std::map<std::string, HydroProp*> parseFrictionFile(const std::string& filename); |
| 73 |
> |
void genRandomForceAndTorque(Vector3d& force, Vector3d& torque, unsigned int index, RealType variance); |
| 74 |
> |
std::vector<HydroProp*> hydroProps_; |
| 75 |
|
SeqRandNumGen randNumGen_; |
| 76 |
< |
double variance_; |
| 77 |
< |
}; |
| 78 |
< |
|
| 76 |
> |
RealType variance_; |
| 77 |
> |
RealType langevinBufferRadius_; |
| 78 |
> |
RealType frozenBufferRadius_; |
| 79 |
> |
bool sphericalBoundaryConditions_; |
| 80 |
> |
Globals* simParams; |
| 81 |
> |
Velocitizer* veloMunge; |
| 82 |
> |
}; |
| 83 |
> |
|
| 84 |
|
} //end namespace oopse |
| 85 |
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#endif //BRAINS_FORCEMANAGER_HPP |
| 86 |
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|
