--- trunk/src/integrators/DLM.cpp 2009/11/25 20:02:06 1390 +++ trunk/src/integrators/DLM.cpp 2012/08/22 02:28:28 1782 @@ -36,7 +36,8 @@ * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). - * [4] Vardeman & Gezelter, in progress (2009). + * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). + * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). */ #include "DLM.hpp" @@ -77,7 +78,6 @@ namespace OpenMD { // rotate about the z-axis angle = dt * ji[2] / I(2, 2); - sd->addZangle(angle); rotateStep( 0, 1, angle, ji, A); // rotate about the y-axis @@ -108,7 +108,7 @@ namespace OpenMD { RotMat3x3d rot = RotMat3x3d::identity(); // initalize rot as a unit matrix // use a small angle aproximation for sin and cosine - + angleSqr = angle * angle; angleSqrOver4 = angleSqr / 4.0; top = 1.0 - angleSqrOver4; @@ -116,10 +116,11 @@ namespace OpenMD { cosAngle = top / bottom; sinAngle = angle / bottom; - + // or don't use the small angle approximation: //cosAngle = cos(angle); //sinAngle = sin(angle); + rot(axes1, axes1) = cosAngle; rot(axes2, axes2) = cosAngle;