Added support to print Thermal Helfand Moment in the stat file.
Adding property set to svn entries
Added preliminary code for Alpha Hull calculation using qhull. Added preliminary support to SMIPD to support Alpha Hull. Alpha Hull does not yet add the correct things to triangle to be returned to SMPID. Preliminary changes for shadow hamiltonian integrator. Chages to md files so they will work in openMD.
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
RNEMD temperature and exchange reporting
Bug fixes and sanity checks for RNEMD (nBins should be even), check to make sure we aren't selecting inappropriate numbers of integrable Objects
adding support for RNEMD
General bug-fixes and other changes to make particle pots work with the Helfand Energy correlation function
Added some logic to print out a special pair distance as a column in the stat file. To use this feature, use taggedAtomPair = "0, 10" and printTaggedPairDistance = "true" in the md file. Then, the distance between integrableObjects 0 and 10 will be computed and printed in the stat file on each statWrite.
Changes required for Inversions and Base Atom types. This will break OOPSE badly for a few days or so...
Changes for MnM forcefield.
Massive update to do virials (both atomic and cutoff-group) correctly. The rigid body constraint contributions had been missing and this was masked by the use of cutoff groups...
Added simulation box dipole moment accumulation for the purposes of calculating dielectric constants
Customized StatWriter is working
Added method to remove system angular momentum to velocitizer and added method to calculate system angular momentum to siminfo.
adding keyword printPressureTensor
xemacs has been drafted to perform our indentation services
merging new_design branch into OOPSE-2.0
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