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root/OpenMD/trunk/src/brains/Stats.cpp
Revision: 1638
Committed: Fri Sep 23 20:52:24 2011 UTC (13 years, 7 months ago) by chuckv
File size: 10540 byte(s)
Log Message:
Added support to print Thermal Helfand Moment in the stat file. 

File Contents

# User Rev Content
1 gezelter 507 /*
2 chuckv 1402 * Copyright (c) 2005, 2009 The University of Notre Dame. All Rights Reserved.
3 gezelter 246 *
4     * The University of Notre Dame grants you ("Licensee") a
5     * non-exclusive, royalty free, license to use, modify and
6     * redistribute this software in source and binary code form, provided
7     * that the following conditions are met:
8     *
9 gezelter 1390 * 1. Redistributions of source code must retain the above copyright
10 gezelter 246 * notice, this list of conditions and the following disclaimer.
11     *
12 gezelter 1390 * 2. Redistributions in binary form must reproduce the above copyright
13 gezelter 246 * notice, this list of conditions and the following disclaimer in the
14     * documentation and/or other materials provided with the
15     * distribution.
16     *
17     * This software is provided "AS IS," without a warranty of any
18     * kind. All express or implied conditions, representations and
19     * warranties, including any implied warranty of merchantability,
20     * fitness for a particular purpose or non-infringement, are hereby
21     * excluded. The University of Notre Dame and its licensors shall not
22     * be liable for any damages suffered by licensee as a result of
23     * using, modifying or distributing the software or its
24     * derivatives. In no event will the University of Notre Dame or its
25     * licensors be liable for any lost revenue, profit or data, or for
26     * direct, indirect, special, consequential, incidental or punitive
27     * damages, however caused and regardless of the theory of liability,
28     * arising out of the use of or inability to use software, even if the
29     * University of Notre Dame has been advised of the possibility of
30     * such damages.
31 gezelter 1390 *
32     * SUPPORT OPEN SCIENCE! If you use OpenMD or its source code in your
33     * research, please cite the appropriate papers when you publish your
34     * work. Good starting points are:
35     *
36     * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).
37     * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).
38     * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).
39     * [4] Vardeman & Gezelter, in progress (2009).
40 gezelter 246 */
41    
42 gezelter 507 /**
43     * @file Stats.cpp
44     * @author tlin
45     * @date 11/04/2004
46     * @time 14:26am
47     * @version 1.0
48     */
49 gezelter 246
50     #include "brains/Stats.hpp"
51    
52 gezelter 1390 namespace OpenMD {
53 gezelter 246
54 gezelter 507 bool Stats::isInit_ = false;
55     std::string Stats::title_[Stats::ENDINDEX - Stats::BEGININDEX];
56     std::string Stats::units_[Stats::ENDINDEX - Stats::BEGININDEX];
57 tim 681 Stats::StatsMapType Stats::statsMap;
58 gezelter 507 Stats::Stats() {
59 gezelter 246
60     if (!isInit_) {
61 gezelter 507 init();
62     isInit_ = true;
63 gezelter 246 }
64    
65 gezelter 507 }
66 gezelter 246
67 gezelter 507 void Stats::init() {
68 gezelter 246
69     Stats::title_[TIME] = "Time";
70     Stats::title_[TOTAL_ENERGY] = "Total Energy";
71     Stats::title_[POTENTIAL_ENERGY] = "Potential Energy";
72     Stats::title_[KINETIC_ENERGY] = "Kinetic Energy";
73     Stats::title_[TEMPERATURE] = "Temperature";
74     Stats::title_[PRESSURE] = "Pressure";
75     Stats::title_[VOLUME] = "Volume";
76 chuckv 1153 Stats::title_[HULLVOLUME] = "Hull Volume";
77     Stats::title_[GYRVOLUME] = "Gyrational Volume";
78 gezelter 246 Stats::title_[CONSERVED_QUANTITY] = "Conserved Quantity";
79     Stats::title_[TRANSLATIONAL_KINETIC] = "Translational Kinetic";
80     Stats::title_[ROTATIONAL_KINETIC] = "Rotational Kinetic";
81     Stats::title_[LONG_RANGE_POTENTIAL] = "Long Range Potential";
82     Stats::title_[SHORT_RANGE_POTENTIAL] = "Short Range Potential";
83     Stats::title_[VANDERWAALS_POTENTIAL] = "van der waals Potential";
84 tim 681 Stats::title_[ELECTROSTATIC_POTENTIAL] = "Electrostatic Potential";
85 gezelter 246 Stats::title_[BOND_POTENTIAL] = "Bond Potential";
86     Stats::title_[BEND_POTENTIAL] = "Bend Potential";
87     Stats::title_[DIHEDRAL_POTENTIAL] = "Dihedral Potential";
88 cli2 1275 Stats::title_[INVERSION_POTENTIAL] = "Inversion Potential";
89 gezelter 246 Stats::title_[VRAW] = "Raw Potential";
90     Stats::title_[VHARM] = "Harmonic Potential";
91 chuckv 1402 Stats::title_[SHADOWH] = "Shadow Hamiltonian";
92 gezelter 1126 Stats::title_[PRESSURE_TENSOR_XX] = "P_xx";
93     Stats::title_[PRESSURE_TENSOR_XY] = "P_xy";
94     Stats::title_[PRESSURE_TENSOR_XZ] = "P_xz";
95     Stats::title_[PRESSURE_TENSOR_YX] = "P_yx";
96     Stats::title_[PRESSURE_TENSOR_YY] = "P_yy";
97     Stats::title_[PRESSURE_TENSOR_YZ] = "P_yz";
98     Stats::title_[PRESSURE_TENSOR_ZX] = "P_zx";
99     Stats::title_[PRESSURE_TENSOR_ZY] = "P_zy";
100     Stats::title_[PRESSURE_TENSOR_ZZ] = "P_zz";
101 chrisfen 998 Stats::title_[BOX_DIPOLE_X] = "box dipole x";
102     Stats::title_[BOX_DIPOLE_Y] = "box dipole y";
103     Stats::title_[BOX_DIPOLE_Z] = "box dipole z";
104 gezelter 1291 Stats::title_[TAGGED_PAIR_DISTANCE] = "Tagged_Pair_Distance";
105 skuang 1369 Stats::title_[RNEMD_EXCHANGE_TOTAL] = "RNEMD_exchange_total";
106 chuckv 1638 Stats::title_[THERMAL_HELFANDMOMENT_X] = "Thermal Helfand Moment x";
107     Stats::title_[THERMAL_HELFANDMOMENT_Y] = "Thermal Helfand Moment y";
108     Stats::title_[THERMAL_HELFANDMOMENT_Z] = "Thermal Helfand Moment z";
109 gezelter 1291
110 gezelter 246 Stats::units_[TIME] = "fs";
111     Stats::units_[TOTAL_ENERGY] = "kcal/mol";
112     Stats::units_[POTENTIAL_ENERGY] = "kcal/mol";
113     Stats::units_[KINETIC_ENERGY] = "kcal/mol";
114     Stats::units_[TEMPERATURE] = "K";
115     Stats::units_[PRESSURE] = "atm";
116     Stats::units_[VOLUME] = "A^3";
117 chuckv 1153 Stats::units_[HULLVOLUME] = "A^3";
118     Stats::units_[GYRVOLUME] = "A^3";
119 gezelter 246 Stats::units_[CONSERVED_QUANTITY] = "kcal/mol";
120     Stats::units_[TRANSLATIONAL_KINETIC] = "kcal/mol";
121     Stats::units_[ROTATIONAL_KINETIC] = "kcal/mol";
122     Stats::units_[LONG_RANGE_POTENTIAL] = "kcal/mol";
123     Stats::units_[SHORT_RANGE_POTENTIAL] = "kcal/mol";
124     Stats::units_[VANDERWAALS_POTENTIAL] = "kcal/mol";
125 tim 681 Stats::units_[ELECTROSTATIC_POTENTIAL] = "kcal/mol";
126 gezelter 246 Stats::units_[BOND_POTENTIAL] = "kcal/mol";
127     Stats::units_[BEND_POTENTIAL] = "kcal/mol";
128     Stats::units_[DIHEDRAL_POTENTIAL] = "kcal/mol";
129 cli2 1275 Stats::units_[INVERSION_POTENTIAL] = "kcal/mol";
130 gezelter 246 Stats::units_[VRAW] = "kcal/mol";
131     Stats::units_[VHARM] = "kcal/mol";
132 chuckv 1402 Stats::units_[SHADOWH] = "kcal/mol";
133 gezelter 1126 Stats::units_[PRESSURE_TENSOR_XX] = "amu*fs^-2*Ang^-1";
134     Stats::units_[PRESSURE_TENSOR_XY] = "amu*fs^-2*Ang^-1";
135     Stats::units_[PRESSURE_TENSOR_XZ] = "amu*fs^-2*Ang^-1";
136     Stats::units_[PRESSURE_TENSOR_YX] = "amu*fs^-2*Ang^-1";
137     Stats::units_[PRESSURE_TENSOR_YY] = "amu*fs^-2*Ang^-1";
138     Stats::units_[PRESSURE_TENSOR_YZ] = "amu*fs^-2*Ang^-1";
139     Stats::units_[PRESSURE_TENSOR_ZX] = "amu*fs^-2*Ang^-1";
140     Stats::units_[PRESSURE_TENSOR_ZY] = "amu*fs^-2*Ang^-1";
141     Stats::units_[PRESSURE_TENSOR_ZZ] = "amu*fs^-2*Ang^-1";
142 chrisfen 998 Stats::units_[BOX_DIPOLE_X] = "C*m";
143     Stats::units_[BOX_DIPOLE_Y] = "C*m";
144     Stats::units_[BOX_DIPOLE_Z] = "C*m";
145 gezelter 1291 Stats::units_[TAGGED_PAIR_DISTANCE] = "Ang";
146 skuang 1369 Stats::units_[RNEMD_EXCHANGE_TOTAL] = "Variable";
147 chuckv 1638 Stats::units_[THERMAL_HELFANDMOMENT_X] = "Ang*kcal/mol";
148     Stats::units_[THERMAL_HELFANDMOMENT_Y] = "Ang*kcal/mol";
149     Stats::units_[THERMAL_HELFANDMOMENT_Z] = "Ang*kcal/mol";
150 tim 681
151     Stats::statsMap.insert(StatsMapType::value_type("TIME", TIME));
152     Stats::statsMap.insert(StatsMapType::value_type("TOTAL_ENERGY", TOTAL_ENERGY));
153     Stats::statsMap.insert(StatsMapType::value_type("POTENTIAL_ENERGY", POTENTIAL_ENERGY));
154     Stats::statsMap.insert(StatsMapType::value_type("KINETIC_ENERGY", KINETIC_ENERGY));
155     Stats::statsMap.insert(StatsMapType::value_type("TEMPERATURE", TEMPERATURE));
156     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE", PRESSURE));
157     Stats::statsMap.insert(StatsMapType::value_type("VOLUME", VOLUME));
158 gezelter 1313 Stats::statsMap.insert(StatsMapType::value_type("HULLVOLUME", HULLVOLUME));
159     Stats::statsMap.insert(StatsMapType::value_type("GYRVOLUME", GYRVOLUME));
160 tim 681 Stats::statsMap.insert(StatsMapType::value_type("CONSERVED_QUANTITY", CONSERVED_QUANTITY));
161     Stats::statsMap.insert(StatsMapType::value_type("TRANSLATIONAL_KINETIC", TRANSLATIONAL_KINETIC));
162     Stats::statsMap.insert(StatsMapType::value_type("ROTATIONAL_KINETIC", ROTATIONAL_KINETIC));
163     Stats::statsMap.insert(StatsMapType::value_type("LONG_RANGE_POTENTIAL", LONG_RANGE_POTENTIAL));
164     Stats::statsMap.insert(StatsMapType::value_type("SHORT_RANGE_POTENTIAL", SHORT_RANGE_POTENTIAL));
165     Stats::statsMap.insert(StatsMapType::value_type("VANDERWAALS_POTENTIAL", VANDERWAALS_POTENTIAL));
166     Stats::statsMap.insert(StatsMapType::value_type("ELECTROSTATIC_POTENTIAL", ELECTROSTATIC_POTENTIAL));
167     Stats::statsMap.insert(StatsMapType::value_type("BOND_POTENTIAL", BOND_POTENTIAL));
168     Stats::statsMap.insert(StatsMapType::value_type("BEND_POTENTIAL", BEND_POTENTIAL));
169     Stats::statsMap.insert(StatsMapType::value_type("DIHEDRAL_POTENTIAL", DIHEDRAL_POTENTIAL));
170 cli2 1275 Stats::statsMap.insert(StatsMapType::value_type("INVERSION_POTENTIAL", INVERSION_POTENTIAL));
171 tim 681 Stats::statsMap.insert(StatsMapType::value_type("VRAW", VRAW));
172     Stats::statsMap.insert(StatsMapType::value_type("VHARM", VHARM));
173 gezelter 1126 Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_XX", PRESSURE_TENSOR_XX));
174     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_XY", PRESSURE_TENSOR_XY));
175     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_XZ", PRESSURE_TENSOR_XZ));
176     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_YX", PRESSURE_TENSOR_YX));
177     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_YY", PRESSURE_TENSOR_YY));
178     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_YZ", PRESSURE_TENSOR_YZ));
179     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_ZX", PRESSURE_TENSOR_ZX));
180     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_ZY", PRESSURE_TENSOR_ZY));
181     Stats::statsMap.insert(StatsMapType::value_type("PRESSURE_TENSOR_ZZ", PRESSURE_TENSOR_ZZ));
182 chrisfen 998 Stats::statsMap.insert(StatsMapType::value_type("BOX_DIPOLE_X", BOX_DIPOLE_X));
183     Stats::statsMap.insert(StatsMapType::value_type("BOX_DIPOLE_Y", BOX_DIPOLE_Y));
184     Stats::statsMap.insert(StatsMapType::value_type("BOX_DIPOLE_Z", BOX_DIPOLE_Z));
185 gezelter 1291 Stats::statsMap.insert(StatsMapType::value_type("TAGGED_PAIR_DISTANCE", TAGGED_PAIR_DISTANCE));
186 skuang 1369 Stats::statsMap.insert(StatsMapType::value_type("RNEMD_EXCHANGE_TOTAL", RNEMD_EXCHANGE_TOTAL));
187 chuckv 1638 Stats::statsMap.insert(StatsMapType::value_type("SHADOWH", SHADOWH));
188     Stats::statsMap.insert(StatsMapType::value_type("THERMAL_HELFANDMOMENT_X",THERMAL_HELFANDMOMENT_X));
189     Stats::statsMap.insert(StatsMapType::value_type("THERMAL_HELFANDMOMENT_Y",THERMAL_HELFANDMOMENT_Y));
190     Stats::statsMap.insert(StatsMapType::value_type("THERMAL_HELFANDMOMENT_Z",THERMAL_HELFANDMOMENT_Z));
191 gezelter 507 }
192 gezelter 246
193     }

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