clean up SimInfo; modify the images of SelectionExpression.html
adding exclude pairs for rigidbody and cutoff group
adding IndexFinder which is used to select the molecules; Seperate ElectrostaticAtomTypesSectionParser into ChargeAtomTypesSectionParser and MultipoleAtomTypesSectionParser;remove print dipole option from Dump2XYZ;
Fixing a bug in BitSet.cpp
begin bug fix
fix a bug in calculating bytes per stuntdouble
fixed a bug in SimInfo::getCutoff()
maximum length defaults to the cutoff radius
adding one more constructor to Snapshot to create customized DataStorage
adding SelectionManager into SimInfo
fix a bug in SimInfo, use number of cutoff stamp as counter to loop over rigidbody stamp
merging new_design branch into OOPSE-2.0
fixey fixey the breakey breakey
Fortran/C++ interface de-obfuscation project (It is a very long story)
change the #include in source files
Import of OOPSE v. 2.0
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