Added NPA integrator
MERGE OpenMD development 1783:1878 into trunk
MERGE OpenMD development branch 1465:1781 into trunk
This commit should allow EADM simulations to be run on the cluster. Main additions include EADM_FF.hpp/cpp as well as a system dipole correlation option in DynamicProps.
re-added SMIPD as ensemble keyword
Completed SMIPD to Langevin Hull integrator name change
adding new NPTsz integrator (like NPTxyz, but locks x&y together).
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
Only build SMIPDynamics and register it if we have qhull
fixed thermo bug
Adding infrastructure for Amber force field.
Removed older version of openbabel from our code. We now have a configure check to see if openbabel is installed and then we link to the stuff we need. Conversion to OOPSE's md format is handled by only one application (atom2md), so most of the work went on there. ElementsTable still needs some work to function in parallel.
Changes for MnM forcefield.
fixes for open babel
adding NgammaT integrator
Massive changes preparing for release of OOPSE-4: The main difference is that the new MD file format (.md, .dump, .eor) now contains meta-data information along with the configuration information.
Adding spherical boundary conditions to LD integrator
LangevinDynamics in progress
Adding handler for CLAY force field
register openbabel readers/writers
Sutton-Chen almost done. Just need to fix do_forces to use Sutton-Chen.
fixed a capitalization problem with NPT integrator initialization
adding NPAT and NPrT integrators
Shapes is limping along with a array bounds overwrite (I think...). At least the parser loads the forcefield fine...
xemacs has been drafted to perform our indentation services
refactory lattice
refactory LatticeFactory and LatticeCreator
Corrected filename collision for EAM on Mac OS X
merging new_design branch into OOPSE-2.0
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