1 |
gezelter |
507 |
/* |
2 |
gezelter |
246 |
* Copyright (c) 2005 The University of Notre Dame. All Rights Reserved. |
3 |
|
|
* |
4 |
|
|
* The University of Notre Dame grants you ("Licensee") a |
5 |
|
|
* non-exclusive, royalty free, license to use, modify and |
6 |
|
|
* redistribute this software in source and binary code form, provided |
7 |
|
|
* that the following conditions are met: |
8 |
|
|
* |
9 |
|
|
* 1. Acknowledgement of the program authors must be made in any |
10 |
|
|
* publication of scientific results based in part on use of the |
11 |
|
|
* program. An acceptable form of acknowledgement is citation of |
12 |
|
|
* the article in which the program was described (Matthew |
13 |
|
|
* A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher |
14 |
|
|
* J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented |
15 |
|
|
* Parallel Simulation Engine for Molecular Dynamics," |
16 |
|
|
* J. Comput. Chem. 26, pp. 252-271 (2005)) |
17 |
|
|
* |
18 |
|
|
* 2. Redistributions of source code must retain the above copyright |
19 |
|
|
* notice, this list of conditions and the following disclaimer. |
20 |
|
|
* |
21 |
|
|
* 3. Redistributions in binary form must reproduce the above copyright |
22 |
|
|
* notice, this list of conditions and the following disclaimer in the |
23 |
|
|
* documentation and/or other materials provided with the |
24 |
|
|
* distribution. |
25 |
|
|
* |
26 |
|
|
* This software is provided "AS IS," without a warranty of any |
27 |
|
|
* kind. All express or implied conditions, representations and |
28 |
|
|
* warranties, including any implied warranty of merchantability, |
29 |
|
|
* fitness for a particular purpose or non-infringement, are hereby |
30 |
|
|
* excluded. The University of Notre Dame and its licensors shall not |
31 |
|
|
* be liable for any damages suffered by licensee as a result of |
32 |
|
|
* using, modifying or distributing the software or its |
33 |
|
|
* derivatives. In no event will the University of Notre Dame or its |
34 |
|
|
* licensors be liable for any lost revenue, profit or data, or for |
35 |
|
|
* direct, indirect, special, consequential, incidental or punitive |
36 |
|
|
* damages, however caused and regardless of the theory of liability, |
37 |
|
|
* arising out of the use of or inability to use software, even if the |
38 |
|
|
* University of Notre Dame has been advised of the possibility of |
39 |
|
|
* such damages. |
40 |
|
|
*/ |
41 |
|
|
|
42 |
|
|
#include "brains/Register.hpp" |
43 |
|
|
|
44 |
|
|
#include "integrators/IntegratorFactory.hpp" |
45 |
|
|
#include "integrators/IntegratorCreator.hpp" |
46 |
|
|
#include "integrators/Integrator.hpp" |
47 |
|
|
#include "integrators/NVE.hpp" |
48 |
|
|
#include "integrators/NVT.hpp" |
49 |
|
|
#include "integrators/NPTi.hpp" |
50 |
|
|
#include "integrators/NPTf.hpp" |
51 |
|
|
#include "integrators/NPTxyz.hpp" |
52 |
tim |
536 |
#include "integrators/NPAT.hpp" |
53 |
|
|
#include "integrators/NPrT.hpp" |
54 |
gezelter |
1032 |
#include "integrators/NgammaT.hpp" |
55 |
tim |
895 |
#include "integrators/LangevinDynamics.hpp" |
56 |
skuang |
1297 |
#if defined(HAVE_QHULL) |
57 |
chuckv |
1292 |
#include "integrators/SMIPDynamics.hpp" |
58 |
skuang |
1297 |
#endif |
59 |
tim |
536 |
|
60 |
gezelter |
246 |
#include "minimizers/MinimizerFactory.hpp" |
61 |
|
|
#include "minimizers/MinimizerCreator.hpp" |
62 |
|
|
#include "minimizers/PRCG.hpp" |
63 |
|
|
#include "minimizers/SDMinimizer.hpp" |
64 |
|
|
#include "UseTheForce/DUFF.hpp" |
65 |
gezelter |
368 |
#include "UseTheForce/EAM_FF.hpp" |
66 |
gezelter |
246 |
#include "UseTheForce/ForceFieldFactory.hpp" |
67 |
|
|
#include "UseTheForce/ForceFieldCreator.hpp" |
68 |
chrisfen |
514 |
#include "UseTheForce/SHAPES_FF.hpp" |
69 |
chuckv |
728 |
#include "UseTheForce/SC_FF.hpp" |
70 |
chuckv |
1153 |
#include "UseTheForce/MnM_FF.hpp" |
71 |
gezelter |
788 |
#include "UseTheForce/CLAYFF.hpp" |
72 |
gezelter |
1269 |
#include "UseTheForce/Amber_FF.hpp" |
73 |
tim |
484 |
#include "lattice/LatticeFactory.hpp" |
74 |
|
|
#include "lattice/LatticeCreator.hpp" |
75 |
tim |
487 |
#include "lattice/FCCLattice.hpp" |
76 |
gezelter |
246 |
|
77 |
|
|
namespace oopse { |
78 |
|
|
|
79 |
|
|
|
80 |
gezelter |
507 |
void registerForceFields() { |
81 |
gezelter |
246 |
/** @todo move to a seperate initialization module */ |
82 |
|
|
//DUFF, WATER and LJ are merged into one force field |
83 |
|
|
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<DUFF>("DUFF")); |
84 |
|
|
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<DUFF>("WATER")); |
85 |
|
|
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<DUFF>("LJ")); |
86 |
|
|
//in theory, EAM can also be merged |
87 |
gezelter |
368 |
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<EAM_FF>("EAM")); |
88 |
chrisfen |
514 |
//heck, that worked... let's try merging SHAPES |
89 |
|
|
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<SHAPES_FF>("SHAPES")); |
90 |
chuckv |
728 |
//Well if EAM worked... then Sutton-Chen should work like a CHARMM(Hopefully not). |
91 |
|
|
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<SC_FF>("SC")); |
92 |
gezelter |
1269 |
//Well if Sutton-Chen worked... then lets just mangle all of the forcefields together in MnM. |
93 |
|
|
//That sounds like a good idea right...... |
94 |
|
|
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<MnM_FF>("MnM")); |
95 |
gezelter |
788 |
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<CLAYFF>("CLAY")); |
96 |
gezelter |
1269 |
ForceFieldFactory::getInstance()->registerForceField(new ForceFieldBuilder<Amber_FF>("Amber")); |
97 |
gezelter |
507 |
} |
98 |
gezelter |
1269 |
|
99 |
gezelter |
507 |
void registerIntegrators() { |
100 |
gezelter |
246 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NVE>("NVE")); |
101 |
|
|
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NVT>("NVT")); |
102 |
chrisfen |
705 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NPTi>("NPTI")); |
103 |
|
|
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NPTf>("NPTF")); |
104 |
|
|
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NPTxyz>("NPTXYZ")); |
105 |
tim |
536 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NPAT>("NPAT")); |
106 |
chrisfen |
705 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NPrT>("NPRT")); |
107 |
gezelter |
945 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NPrT>("NPGT")); |
108 |
gezelter |
1032 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NgammaT>("NGT")); |
109 |
|
|
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<NgammaT>("NGAMMAT")); |
110 |
tim |
895 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<LangevinDynamics>("LANGEVINDYNAMICS")); |
111 |
gezelter |
945 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<LangevinDynamics>("LD")); |
112 |
skuang |
1297 |
#if defined(HAVE_QHULL) |
113 |
chuckv |
1292 |
IntegratorFactory::getInstance()->registerIntegrator(new IntegratorBuilder<SMIPDynamics>("SMIPD")); |
114 |
skuang |
1297 |
#endif |
115 |
gezelter |
507 |
} |
116 |
gezelter |
246 |
|
117 |
gezelter |
507 |
void registerMinimizers() { |
118 |
gezelter |
246 |
MinimizerFactory::getInstance()->registerMinimizer(new MinimizerBuilder<SDMinimizer>("SD")); |
119 |
|
|
MinimizerFactory::getInstance()->registerMinimizer(new MinimizerBuilder<PRCGMinimizer>("CG")); |
120 |
gezelter |
507 |
} |
121 |
gezelter |
246 |
|
122 |
gezelter |
507 |
void registerLattice(){ |
123 |
tim |
484 |
LatticeFactory::getInstance()->registerLattice(new LatticeBuilder<FCCLattice>("FCC")); |
124 |
gezelter |
507 |
} |
125 |
tim |
484 |
|
126 |
gezelter |
507 |
void registerAll() { |
127 |
gezelter |
246 |
registerForceFields(); |
128 |
|
|
registerIntegrators(); |
129 |
|
|
registerMinimizers(); |
130 |
gezelter |
507 |
} |
131 |
gezelter |
246 |
|
132 |
|
|
} |