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Comparing trunk/src/UseTheForce/ForceField.cpp (file contents):
Revision 963 by tim, Wed May 17 21:51:42 2006 UTC vs.
Revision 1442 by gezelter, Mon May 10 17:28:26 2010 UTC

# Line 6 | Line 6
6   * redistribute this software in source and binary code form, provided
7   * that the following conditions are met:
8   *
9 < * 1. Acknowledgement of the program authors must be made in any
10 < *    publication of scientific results based in part on use of the
11 < *    program.  An acceptable form of acknowledgement is citation of
12 < *    the article in which the program was described (Matthew
13 < *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 < *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 < *    Parallel Simulation Engine for Molecular Dynamics,"
16 < *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 < *
18 < * 2. Redistributions of source code must retain the above copyright
9 > * 1. Redistributions of source code must retain the above copyright
10   *    notice, this list of conditions and the following disclaimer.
11   *
12 < * 3. Redistributions in binary form must reproduce the above copyright
12 > * 2. Redistributions in binary form must reproduce the above copyright
13   *    notice, this list of conditions and the following disclaimer in the
14   *    documentation and/or other materials provided with the
15   *    distribution.
# Line 37 | Line 28
28   * arising out of the use of or inability to use software, even if the
29   * University of Notre Dame has been advised of the possibility of
30   * such damages.
31 + *
32 + * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33 + * research, please cite the appropriate papers when you publish your
34 + * work.  Good starting points are:
35 + *                                                                      
36 + * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).            
37 + * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
38 + * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008).          
39 + * [4]  Vardeman & Gezelter, in progress (2009).                        
40   */
41  
42   /**
# Line 47 | Line 47
47   * @version 1.0
48   */
49    
50 + #include <algorithm>
51   #include "UseTheForce/ForceField.hpp"
52   #include "utils/simError.h"
53 + #include "utils/Tuple.hpp"
54   #include "UseTheForce/DarkSide/atype_interface.h"
55   #include "UseTheForce/DarkSide/fForceOptions_interface.h"
56   #include "UseTheForce/DarkSide/switcheroo_interface.h"
57 < namespace oopse {
57 > namespace OpenMD {
58  
59    ForceField::ForceField() {
60      char* tempPath;
61      tempPath = getenv("FORCE_PARAM_PATH");
62  
63      if (tempPath == NULL) {
64 <      //convert a macro from compiler to a string in c++
63 <      STR_DEFINE(ffPath_, FRC_PATH );
64 >      ffPath_ = "ORNULL(FRC_PATH)";
65      } else {
66        ffPath_ = tempPath;
67      }
# Line 78 | Line 79 | namespace oopse {
79      return atomTypeCont_.find(keys);
80    }
81  
82 <  BondType* ForceField::getBondType(const std::string &at1, const std::string &at2) {
82 >  BondType* ForceField::getBondType(const std::string &at1,
83 >                                    const std::string &at2) {
84      std::vector<std::string> keys;
85      keys.push_back(at1);
86      keys.push_back(at2);    
# Line 88 | Line 90 | namespace oopse {
90      if (bondType) {
91        return bondType;
92      } else {
93 <      //if no exact match found, try wild card match
94 <      return bondTypeCont_.find(keys, wildCardAtomTypeName_);
95 <    }
93 >      AtomType* atype1;
94 >      AtomType* atype2;
95 >      std::vector<std::string> at1key;
96 >      at1key.push_back(at1);
97 >      atype1 = atomTypeCont_.find(at1key);
98 >  
99 >      std::vector<std::string> at2key;
100 >      at2key.push_back(at2);
101 >      atype2 = atomTypeCont_.find(at2key);
102  
103 <  }
103 >      // query atom types for their chains of responsibility
104 >      std::vector<AtomType*> at1Chain = atype1->allYourBase();
105 >      std::vector<AtomType*> at2Chain = atype2->allYourBase();
106  
107 <  BendType* ForceField::getBendType(const std::string &at1, const std::string &at2,
107 >      std::vector<AtomType*>::iterator i;
108 >      std::vector<AtomType*>::iterator j;
109 >
110 >      int ii = 0;
111 >      int jj = 0;
112 >      int bondTypeScore;
113 >
114 >      std::vector<std::pair<int, std::vector<std::string> > > foundBonds;
115 >
116 >      for (i = at1Chain.begin(); i != at1Chain.end(); i++) {
117 >        jj = 0;
118 >        for (j = at2Chain.begin(); j != at2Chain.end(); j++) {
119 >
120 >          bondTypeScore = ii + jj;
121 >
122 >          std::vector<std::string> myKeys;
123 >          myKeys.push_back((*i)->getName());
124 >          myKeys.push_back((*j)->getName());
125 >
126 >          BondType* bondType = bondTypeCont_.find(myKeys);
127 >          if (bondType) {
128 >            foundBonds.push_back(std::make_pair(bondTypeScore, myKeys));
129 >          }
130 >          jj++;
131 >        }
132 >        ii++;
133 >      }
134 >
135 >
136 >      if (foundBonds.size() > 0) {
137 >        // sort the foundBonds by the score:
138 >        std::sort(foundBonds.begin(), foundBonds.end());
139 >    
140 >        int bestScore = foundBonds[0].first;
141 >        std::vector<std::string> theKeys = foundBonds[0].second;
142 >        
143 >        BondType* bestType = bondTypeCont_.find(theKeys);
144 >        
145 >        return bestType;
146 >      } else {
147 >        //if no exact match found, try wild card match
148 >        return bondTypeCont_.find(keys, wildCardAtomTypeName_);      
149 >      }
150 >    }
151 >  }
152 >  
153 >  BendType* ForceField::getBendType(const std::string &at1,
154 >                                    const std::string &at2,
155                                      const std::string &at3) {
156      std::vector<std::string> keys;
157      keys.push_back(at1);
# Line 106 | Line 163 | namespace oopse {
163      if (bendType) {
164        return bendType;
165      } else {
166 <      //if no exact match found, try wild card match
167 <      return bendTypeCont_.find(keys, wildCardAtomTypeName_);
166 >
167 >      AtomType* atype1;
168 >      AtomType* atype2;
169 >      AtomType* atype3;
170 >      std::vector<std::string> at1key;
171 >      at1key.push_back(at1);
172 >      atype1 = atomTypeCont_.find(at1key);
173 >  
174 >      std::vector<std::string> at2key;
175 >      at2key.push_back(at2);
176 >      atype2 = atomTypeCont_.find(at2key);
177 >
178 >      std::vector<std::string> at3key;
179 >      at3key.push_back(at3);
180 >      atype3 = atomTypeCont_.find(at3key);
181 >
182 >      // query atom types for their chains of responsibility
183 >      std::vector<AtomType*> at1Chain = atype1->allYourBase();
184 >      std::vector<AtomType*> at2Chain = atype2->allYourBase();
185 >      std::vector<AtomType*> at3Chain = atype3->allYourBase();
186 >
187 >      std::vector<AtomType*>::iterator i;
188 >      std::vector<AtomType*>::iterator j;
189 >      std::vector<AtomType*>::iterator k;
190 >
191 >      int ii = 0;
192 >      int jj = 0;
193 >      int kk = 0;
194 >      int IKscore;
195 >
196 >      std::vector<tuple3<int, int, std::vector<std::string> > > foundBends;
197 >
198 >      for (j = at2Chain.begin(); j != at2Chain.end(); j++) {
199 >        ii = 0;
200 >        for (i = at1Chain.begin(); i != at1Chain.end(); i++) {
201 >          kk = 0;
202 >          for (k = at3Chain.begin(); k != at3Chain.end(); k++) {
203 >          
204 >            IKscore = ii + kk;
205 >
206 >            std::vector<std::string> myKeys;
207 >            myKeys.push_back((*i)->getName());
208 >            myKeys.push_back((*j)->getName());
209 >            myKeys.push_back((*k)->getName());
210 >
211 >            BendType* bendType = bendTypeCont_.find(myKeys);
212 >            if (bendType) {
213 >              foundBends.push_back( make_tuple3(jj, IKscore, myKeys) );
214 >            }
215 >            kk++;
216 >          }
217 >          ii++;
218 >        }
219 >        jj++;
220 >      }
221 >      
222 >      if (foundBends.size() > 0) {
223 >        std::sort(foundBends.begin(), foundBends.end());
224 >        int jscore = foundBends[0].first;
225 >        int ikscore = foundBends[0].second;
226 >        std::vector<std::string> theKeys = foundBends[0].third;      
227 >        
228 >        BendType* bestType = bendTypeCont_.find(theKeys);  
229 >        return bestType;
230 >      } else {        
231 >        //if no exact match found, try wild card match
232 >        return bendTypeCont_.find(keys, wildCardAtomTypeName_);      
233 >      }
234      }
235    }
236  
237 <  TorsionType* ForceField::getTorsionType(const std::string &at1, const std::string &at2,
238 <                                          const std::string &at3, const std::string &at4) {
237 >  TorsionType* ForceField::getTorsionType(const std::string &at1,
238 >                                          const std::string &at2,
239 >                                          const std::string &at3,
240 >                                          const std::string &at4) {
241      std::vector<std::string> keys;
242      keys.push_back(at1);
243      keys.push_back(at2);    
244      keys.push_back(at3);    
245      keys.push_back(at4);    
246  
247 +
248 +    //try exact match first
249      TorsionType* torsionType = torsionTypeCont_.find(keys);
250      if (torsionType) {
251        return torsionType;
252      } else {
126      //if no exact match found, try wild card match
127      return torsionTypeCont_.find(keys, wildCardAtomTypeName_);
128    }
129    
130    return torsionTypeCont_.find(keys, wildCardAtomTypeName_);
253  
254 +      AtomType* atype1;
255 +      AtomType* atype2;
256 +      AtomType* atype3;
257 +      AtomType* atype4;
258 +      std::vector<std::string> at1key;
259 +      at1key.push_back(at1);
260 +      atype1 = atomTypeCont_.find(at1key);
261 +  
262 +      std::vector<std::string> at2key;
263 +      at2key.push_back(at2);
264 +      atype2 = atomTypeCont_.find(at2key);
265 +
266 +      std::vector<std::string> at3key;
267 +      at3key.push_back(at3);
268 +      atype3 = atomTypeCont_.find(at3key);
269 +
270 +      std::vector<std::string> at4key;
271 +      at4key.push_back(at4);
272 +      atype4 = atomTypeCont_.find(at4key);
273 +
274 +      // query atom types for their chains of responsibility
275 +      std::vector<AtomType*> at1Chain = atype1->allYourBase();
276 +      std::vector<AtomType*> at2Chain = atype2->allYourBase();
277 +      std::vector<AtomType*> at3Chain = atype3->allYourBase();
278 +      std::vector<AtomType*> at4Chain = atype4->allYourBase();
279 +
280 +      std::vector<AtomType*>::iterator i;
281 +      std::vector<AtomType*>::iterator j;
282 +      std::vector<AtomType*>::iterator k;
283 +      std::vector<AtomType*>::iterator l;
284 +
285 +      int ii = 0;
286 +      int jj = 0;
287 +      int kk = 0;
288 +      int ll = 0;
289 +      int ILscore;
290 +      int JKscore;
291 +
292 +      std::vector<tuple3<int, int, std::vector<std::string> > > foundTorsions;
293 +
294 +      for (j = at2Chain.begin(); j != at2Chain.end(); j++) {
295 +        kk = 0;
296 +        for (k = at3Chain.begin(); k != at3Chain.end(); k++) {
297 +          ii = 0;      
298 +          for (i = at1Chain.begin(); i != at1Chain.end(); i++) {
299 +            ll = 0;
300 +            for (l = at4Chain.begin(); l != at4Chain.end(); l++) {
301 +          
302 +              ILscore = ii + ll;
303 +              JKscore = jj + kk;
304 +
305 +              std::vector<std::string> myKeys;
306 +              myKeys.push_back((*i)->getName());
307 +              myKeys.push_back((*j)->getName());
308 +              myKeys.push_back((*k)->getName());
309 +              myKeys.push_back((*l)->getName());
310 +
311 +              TorsionType* torsionType = torsionTypeCont_.find(myKeys);
312 +              if (torsionType) {
313 +                foundTorsions.push_back( make_tuple3(JKscore, ILscore, myKeys) );
314 +              }
315 +              ll++;
316 +            }
317 +            ii++;
318 +          }
319 +          kk++;
320 +        }
321 +        jj++;
322 +      }
323 +      
324 +      if (foundTorsions.size() > 0) {
325 +        std::sort(foundTorsions.begin(), foundTorsions.end());
326 +        int jkscore = foundTorsions[0].first;
327 +        int ilscore = foundTorsions[0].second;
328 +        std::vector<std::string> theKeys = foundTorsions[0].third;
329 +        
330 +        TorsionType* bestType = torsionTypeCont_.find(theKeys);
331 +        return bestType;
332 +      } else {
333 +        //if no exact match found, try wild card match
334 +        return torsionTypeCont_.find(keys, wildCardAtomTypeName_);
335 +      }
336 +    }
337    }
338  
339 <  BondType* ForceField::getExactBondType(const std::string &at1, const std::string &at2){
339 >  InversionType* ForceField::getInversionType(const std::string &at1,
340 >                                              const std::string &at2,
341 >                                              const std::string &at3,
342 >                                              const std::string &at4) {
343      std::vector<std::string> keys;
344      keys.push_back(at1);
345      keys.push_back(at2);    
346 +    keys.push_back(at3);    
347 +    keys.push_back(at4);    
348 +
349 +    //try exact match first
350 +    InversionType* inversionType = inversionTypeCont_.permutedFindSkippingFirstElement(keys);
351 +    if (inversionType) {
352 +      return inversionType;
353 +    } else {
354 +      
355 +      AtomType* atype1;
356 +      AtomType* atype2;
357 +      AtomType* atype3;
358 +      AtomType* atype4;
359 +      std::vector<std::string> at1key;
360 +      at1key.push_back(at1);
361 +      atype1 = atomTypeCont_.find(at1key);
362 +      
363 +      std::vector<std::string> at2key;
364 +      at2key.push_back(at2);
365 +      atype2 = atomTypeCont_.find(at2key);
366 +      
367 +      std::vector<std::string> at3key;
368 +      at3key.push_back(at3);
369 +      atype3 = atomTypeCont_.find(at3key);
370 +      
371 +      std::vector<std::string> at4key;
372 +      at4key.push_back(at4);
373 +      atype4 = atomTypeCont_.find(at4key);
374 +
375 +      // query atom types for their chains of responsibility
376 +      std::vector<AtomType*> at1Chain = atype1->allYourBase();
377 +      std::vector<AtomType*> at2Chain = atype2->allYourBase();
378 +      std::vector<AtomType*> at3Chain = atype3->allYourBase();
379 +      std::vector<AtomType*> at4Chain = atype4->allYourBase();
380 +
381 +      std::vector<AtomType*>::iterator i;
382 +      std::vector<AtomType*>::iterator j;
383 +      std::vector<AtomType*>::iterator k;
384 +      std::vector<AtomType*>::iterator l;
385 +
386 +      int ii = 0;
387 +      int jj = 0;
388 +      int kk = 0;
389 +      int ll = 0;
390 +      int Iscore;
391 +      int JKLscore;
392 +      
393 +      std::vector<tuple3<int, int, std::vector<std::string> > > foundInversions;
394 +      
395 +      for (j = at2Chain.begin(); j != at2Chain.end(); j++) {
396 +        kk = 0;
397 +        for (k = at3Chain.begin(); k != at3Chain.end(); k++) {
398 +          ii = 0;      
399 +          for (i = at1Chain.begin(); i != at1Chain.end(); i++) {
400 +            ll = 0;
401 +            for (l = at4Chain.begin(); l != at4Chain.end(); l++) {
402 +              
403 +              Iscore = ii;
404 +              JKLscore = jj + kk + ll;
405 +              
406 +              std::vector<std::string> myKeys;
407 +              myKeys.push_back((*i)->getName());
408 +              myKeys.push_back((*j)->getName());
409 +              myKeys.push_back((*k)->getName());
410 +              myKeys.push_back((*l)->getName());
411 +              
412 +              InversionType* inversionType = inversionTypeCont_.permutedFindSkippingFirstElement(myKeys);
413 +              if (inversionType) {
414 +                foundInversions.push_back( make_tuple3(Iscore, JKLscore, myKeys) );
415 +              }
416 +              ll++;
417 +            }
418 +            ii++;
419 +          }
420 +          kk++;
421 +        }
422 +        jj++;
423 +      }
424 +        
425 +      if (foundInversions.size() > 0) {
426 +        std::sort(foundInversions.begin(), foundInversions.end());
427 +        int iscore = foundInversions[0].first;
428 +        int jklscore = foundInversions[0].second;
429 +        std::vector<std::string> theKeys = foundInversions[0].third;
430 +        
431 +        InversionType* bestType = inversionTypeCont_.permutedFindSkippingFirstElement(theKeys);
432 +        return bestType;
433 +      } else {
434 +        //if no exact match found, try wild card match
435 +        return inversionTypeCont_.find(keys, wildCardAtomTypeName_);
436 +      }
437 +    }
438 +  }
439 +  
440 +  NonBondedInteractionType* ForceField::getNonBondedInteractionType(const std::string &at1, const std::string &at2) {
441 +    std::vector<std::string> keys;
442 +    keys.push_back(at1);
443 +    keys.push_back(at2);    
444 +    
445 +    //try exact match first
446 +    NonBondedInteractionType* nbiType = nonBondedInteractionTypeCont_.find(keys);
447 +    if (nbiType) {
448 +      return nbiType;
449 +    } else {
450 +      //if no exact match found, try wild card match
451 +      return nonBondedInteractionTypeCont_.find(keys, wildCardAtomTypeName_);
452 +    }    
453 +  }
454 +  
455 +  BondType* ForceField::getExactBondType(const std::string &at1,
456 +                                         const std::string &at2){
457 +    std::vector<std::string> keys;
458 +    keys.push_back(at1);
459 +    keys.push_back(at2);    
460      return bondTypeCont_.find(keys);
461    }
462 <
463 <  BendType* ForceField::getExactBendType(const std::string &at1, const std::string &at2,
462 >  
463 >  BendType* ForceField::getExactBendType(const std::string &at1,
464 >                                         const std::string &at2,
465                                           const std::string &at3){
466      std::vector<std::string> keys;
467      keys.push_back(at1);
# Line 146 | Line 469 | namespace oopse {
469      keys.push_back(at3);    
470      return bendTypeCont_.find(keys);
471    }
472 <
473 <  TorsionType* ForceField::getExactTorsionType(const std::string &at1, const std::string &at2,
474 <                                               const std::string &at3, const std::string &at4){
472 >  
473 >  TorsionType* ForceField::getExactTorsionType(const std::string &at1,
474 >                                               const std::string &at2,
475 >                                               const std::string &at3,
476 >                                               const std::string &at4){
477      std::vector<std::string> keys;
478      keys.push_back(at1);
479      keys.push_back(at2);    
# Line 156 | Line 481 | namespace oopse {
481      keys.push_back(at4);  
482      return torsionTypeCont_.find(keys);
483    }
484 +  
485 +  InversionType* ForceField::getExactInversionType(const std::string &at1,
486 +                                                   const std::string &at2,
487 +                                                   const std::string &at3,
488 +                                                   const std::string &at4){
489 +    std::vector<std::string> keys;
490 +    keys.push_back(at1);
491 +    keys.push_back(at2);    
492 +    keys.push_back(at3);    
493 +    keys.push_back(at4);  
494 +    return inversionTypeCont_.find(keys);
495 +  }
496 +  
497 +  NonBondedInteractionType* ForceField::getExactNonBondedInteractionType(const std::string &at1, const std::string &at2){
498 +    std::vector<std::string> keys;
499 +    keys.push_back(at1);
500 +    keys.push_back(at2);    
501 +    return nonBondedInteractionTypeCont_.find(keys);
502 +  }
503 +  
504 +
505    bool ForceField::addAtomType(const std::string &at, AtomType* atomType) {
506      std::vector<std::string> keys;
507      keys.push_back(at);
508      return atomTypeCont_.add(keys, atomType);
509    }
510  
511 <  bool ForceField::addBondType(const std::string &at1, const std::string &at2, BondType* bondType) {
511 >  bool ForceField::replaceAtomType(const std::string &at, AtomType* atomType) {
512      std::vector<std::string> keys;
513 +    keys.push_back(at);
514 +    return atomTypeCont_.replace(keys, atomType);
515 +  }
516 +
517 +  bool ForceField::addBondType(const std::string &at1, const std::string &at2,
518 +                               BondType* bondType) {
519 +    std::vector<std::string> keys;
520      keys.push_back(at1);
521      keys.push_back(at2);    
522 <    return bondTypeCont_.add(keys, bondType);
170 <
522 >    return bondTypeCont_.add(keys, bondType);    
523    }
524 <
524 >  
525    bool ForceField::addBendType(const std::string &at1, const std::string &at2,
526                                 const std::string &at3, BendType* bendType) {
527      std::vector<std::string> keys;
# Line 178 | Line 530 | namespace oopse {
530      keys.push_back(at3);    
531      return bendTypeCont_.add(keys, bendType);
532    }
533 <
534 <  bool ForceField::addTorsionType(const std::string &at1, const std::string &at2,
535 <                                  const std::string &at3, const std::string &at4, TorsionType* torsionType) {
533 >  
534 >  bool ForceField::addTorsionType(const std::string &at1,
535 >                                  const std::string &at2,
536 >                                  const std::string &at3,
537 >                                  const std::string &at4,
538 >                                  TorsionType* torsionType) {
539      std::vector<std::string> keys;
540      keys.push_back(at1);
541      keys.push_back(at2);    
# Line 189 | Line 544 | namespace oopse {
544      return torsionTypeCont_.add(keys, torsionType);
545    }
546  
547 +  bool ForceField::addInversionType(const std::string &at1,
548 +                                    const std::string &at2,
549 +                                    const std::string &at3,
550 +                                    const std::string &at4,
551 +                                    InversionType* inversionType) {
552 +    std::vector<std::string> keys;
553 +    keys.push_back(at1);
554 +    keys.push_back(at2);    
555 +    keys.push_back(at3);    
556 +    keys.push_back(at4);    
557 +    return inversionTypeCont_.add(keys, inversionType);
558 +  }
559 +  
560 +  bool ForceField::addNonBondedInteractionType(const std::string &at1,
561 +                                               const std::string &at2,
562 +                                               NonBondedInteractionType* nbiType) {
563 +    std::vector<std::string> keys;
564 +    keys.push_back(at1);
565 +    keys.push_back(at2);    
566 +    return nonBondedInteractionTypeCont_.add(keys, nbiType);
567 +  }
568 +  
569    RealType ForceField::getRcutFromAtomType(AtomType* at) {
570      /**@todo */
571      GenericData* data;
572      RealType rcut = 0.0;
573 <
573 >    
574      if (at->isLennardJones()) {
575        data = at->getPropertyByName("LennardJones");
576        if (data != NULL) {
577          LJParamGenericData* ljData = dynamic_cast<LJParamGenericData*>(data);
578 <
578 >        
579          if (ljData != NULL) {
580            LJParam ljParam = ljData->getData();
581 <
581 >          
582            //by default use 2.5*sigma as cutoff radius
583            rcut = 2.5 * ljParam.sigma;
584 <                
584 >          
585          } else {
586            sprintf( painCave.errMsg,
587                     "Can not cast GenericData to LJParam\n");
588 <          painCave.severity = OOPSE_ERROR;
588 >          painCave.severity = OPENMD_ERROR;
589            painCave.isFatal = 1;
590            simError();          
591          }            
592        } else {
593          sprintf( painCave.errMsg, "Can not find Parameters for LennardJones\n");
594 <        painCave.severity = OOPSE_ERROR;
594 >        painCave.severity = OPENMD_ERROR;
595          painCave.isFatal = 1;
596          simError();          
597        }
598      }
222
599      return rcut;    
600    }
601 +  
602  
226
603    ifstrstream* ForceField::openForceFieldFile(const std::string& filename) {
604      std::string forceFieldFilename(filename);
605      ifstrstream* ffStream = new ifstrstream();
# Line 245 | Line 621 | namespace oopse {
621                   "\tHave you tried setting the FORCE_PARAM_PATH environment "
622                   "variable?\n",
623                   forceFieldFilename.c_str() );
624 <        painCave.severity = OOPSE_ERROR;
624 >        painCave.severity = OPENMD_ERROR;
625          painCave.isFatal = 1;
626          simError();
627        }
628      }  
253
629      return ffStream;
255
630    }
631  
632    void ForceField::setFortranForceOptions(){
# Line 260 | Line 634 | namespace oopse {
634      forceFieldOptions_.makeFortranOptions(theseFortranOptions);
635      setfForceOptions(&theseFortranOptions);
636    }
637 < } //end namespace oopse
637 > } //end namespace OpenMD

Comparing trunk/src/UseTheForce/ForceField.cpp (property svn:keywords):
Revision 963 by tim, Wed May 17 21:51:42 2006 UTC vs.
Revision 1442 by gezelter, Mon May 10 17:28:26 2010 UTC

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