Some potential bug fixes.
MERGE OpenMD development branch 1465:1781 into trunk
Adding property set to svn entries
One more
modernizing some parameters
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
pythonification of affineScale, translate in md2md, removed spurious cutoffGroups in waterBoxer. Perhaps we need a python md-file parsing library?
added stat2visco
forgot a tolerance for simple cubic lattice magic number determination
fixed a bug in waterBoxer
Added the ability of waterBoxer to deal with non-cubical boxes.
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