fixed affineScale to know about molecules that have traversed multiple box lengths.
MERGE OpenMD development branch 1465:1781 into trunk
Adding property set to svn entries
Almost all of the changes necessary to create OpenMD out of our old project (OOPSE-4)
pythonification of affineScale, translate in md2md, removed spurious cutoffGroups in waterBoxer. Perhaps we need a python md-file parsing library?
oops with the affineScale
who needs .in files for perl? using env
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