--- trunk/src/applications/staticProps/StaticPropsCmd.h 2011/06/19 17:51:15 1585 +++ trunk/src/applications/staticProps/StaticPropsCmd.h 2013/01/29 20:58:08 1843 @@ -93,6 +93,9 @@ struct gengetopt_args_info char * comsele_arg; /**< @brief select stunt doubles for center-of-mass reference point. */ char * comsele_orig; /**< @brief select stunt doubles for center-of-mass reference point original value given at command line. */ const char *comsele_help; /**< @brief select stunt doubles for center-of-mass reference point help description. */ + int seleoffset_arg; /**< @brief global index offset for a second object (used to define a vector between sites in molecule). */ + char * seleoffset_orig; /**< @brief global index offset for a second object (used to define a vector between sites in molecule) original value given at command line. */ + const char *seleoffset_help; /**< @brief global index offset for a second object (used to define a vector between sites in molecule) help description. */ char * molname_arg; /**< @brief molecule name. */ char * molname_orig; /**< @brief molecule name original value given at command line. */ const char *molname_help; /**< @brief molecule name help description. */ @@ -128,7 +131,8 @@ struct gengetopt_args_info const char *angle_r_help; /**< @brief angle of R help description. */ const char *hullvol_help; /**< @brief hull volume of nanoparticle help description. */ const char *rodlength_help; /**< @brief length of nanorod help description. */ - const char *tet_param_help; /**< @brief tetrahedrality order parameter help description. */ + const char *tet_param_help; /**< @brief tetrahedrality order parameter (Qk) help description. */ + const char *tet_param_z_help; /**< @brief spatially-resolved tetrahedrality order parameter Qk(z) help description. */ unsigned int help_given ; /**< @brief Whether help was given. */ unsigned int version_given ; /**< @brief Whether version was given. */ @@ -150,6 +154,7 @@ struct gengetopt_args_info unsigned int sele3_given ; /**< @brief Whether sele3 was given. */ unsigned int refsele_given ; /**< @brief Whether refsele was given. */ unsigned int comsele_given ; /**< @brief Whether comsele was given. */ + unsigned int seleoffset_given ; /**< @brief Whether seleoffset was given. */ unsigned int molname_given ; /**< @brief Whether molname was given. */ unsigned int begin_given ; /**< @brief Whether begin was given. */ unsigned int end_given ; /**< @brief Whether end was given. */ @@ -178,6 +183,7 @@ struct gengetopt_args_info unsigned int hullvol_given ; /**< @brief Whether hullvol was given. */ unsigned int rodlength_given ; /**< @brief Whether rodlength was given. */ unsigned int tet_param_given ; /**< @brief Whether tet_param was given. */ + unsigned int tet_param_z_given ; /**< @brief Whether tet_param_z was given. */ char **inputs ; /**< @brief unamed options (options without names) */ unsigned inputs_num ; /**< @brief unamed options number */