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root/OpenMD/trunk/src/applications/staticProps/StaticPropsCmd.cpp

Comparing trunk/src/applications/staticProps/StaticPropsCmd.c (file contents):
Revision 545 by tim, Fri May 27 21:11:24 2005 UTC vs.
Revision 1213 by xsun, Wed Jan 23 21:21:50 2008 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.19.1
3		generated with the following command:
4	<	/home/maul/gezelter/tim/bin/gengetopt -i StaticProps.ggo -F StaticPropsCmd
4	>	gengetopt --file-name=StaticPropsCmd -u
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	–
12	–	#include <stdio.h>
13	–	#include <stdlib.h>
14	–	#include <string.h>
15	–
11		/* If we use autoconf.  */
12		#ifdef HAVE_CONFIG_H
13		#include "config.h"
14		#endif
15
16	+	#include <stdio.h>
17	+	#include <stdlib.h>
18	+	#include <string.h>
19	+
20		#include "getopt.h"
21
22		#include "StaticPropsCmd.h"
23
24	+	const char *gengetopt_args_info_purpose = "";
25	+
26	+	const char *gengetopt_args_info_usage = "Usage: StaticProps [OPTIONS]... [FILES]...";
27	+
28	+	const char *gengetopt_args_info_description = "";
29	+
30	+	const char *gengetopt_args_info_help[] = {
31	+	"  -h, --help                    Print help and exit",
32	+	"  -V, --version                 Print version and exit",
33	+	"  -i, --input=filename          input dump file",
34	+	"  -o, --output=filename         output file name",
35	+	"  -n, --step=INT                process every n frame  (default=`1')",
36	+	"  -b, --nbins=INT               number of bins (general purpose)  \n                                  (default=`100')",
37	+	"  -x, --nbins_x=INT             number of bins in x axis  (default=`100')",
38	+	"  -y, --nbins_y=INT             number of bins in y axis  (default=`100')",
39	+	"  -a, --nanglebins=INT          number of bins for cos(angle)  (default=`50')",
40	+	"      --length=DOUBLE           maximum length (Defaults to 1/2 smallest length \n                                  of first frame)",
41	+	"  -c, --rcut=DOUBLE             cutoff radius (rcut)",
42	+	"  -z, --zoffset=DOUBLE          Where to set the zero for the slab_density \n                                  calculation  (default=`0')",
43	+	"      --sele1=selection script  select the first stuntdouble set",
44	+	"      --sele2=selection script  select the second stuntdouble set",
45	+	"      --sele3=selection script  select the third stuntdouble set",
46	+	"      --refsele=selection script\n                                select reference (use and only use with --gxyz)",
47	+	"      --molname=STRING          molecule name",
48	+	"      --begin=INT               begin internal index",
49	+	"      --end=INT                 end internal index",
50	+	"      --radius=DOUBLE           nanoparticle radius",
51	+	"\n Group: staticProps\n   an option of this group is required",
52	+	"      --bo                      bond order parameter (--rcut must be specified)",
53	+	"      --bor                     bond order parameter as a function of radius \n                                  (--rcut must be specified)",
54	+	"      --bad                     N(theta) bond angle density within (--rcut must \n                                  be specified)",
55	+	"  -g, --gofr                    g(r)",
56	+	"      --gofz                    g(z)",
57	+	"      --r_theta                 g(r, cos(theta))",
58	+	"      --r_omega                 g(r, cos(omega))",
59	+	"      --theta_omega             g(cos(theta), cos(omega))",
60	+	"      --gxyz                    g(x, y, z)",
61	+	"  -p, --p2                      p2 order parameter (--sele1 and --sele2 must be \n                                  specified)",
62	+	"      --rp2                     rp2 order parameter (--sele1 and --sele2 must \n                                  be specified)",
63	+	"  -s, --scd                     scd order parameter (either --sele1, --sele2, \n                                  --sele3 are specified or --molname, --begin, \n                                  --end are specified)",
64	+	"  -d, --density                 density plot",
65	+	"      --slab_density            slab density",
66	+	"      --hxy                     hxy",
67	+	"      --rho_r                   rho of R",
68	+	"      --hullvol                 hull volume of nanoparticle",
69	+	0
70	+	};
71	+
72	+	static
73	+	void clear_given (struct gengetopt_args_info *args_info);
74	+	static
75	+	void clear_args (struct gengetopt_args_info *args_info);
76	+
77	+	static int
78	+	cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required, const char *additional_error);
79	+
80	+	static int
81	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
82	+
83	+	static char *
84	+	gengetopt_strdup (const char *s);
85	+
86	+	static
87	+	void clear_given (struct gengetopt_args_info *args_info)
88	+	{
89	+	args_info->help_given = 0 ;
90	+	args_info->version_given = 0 ;
91	+	args_info->input_given = 0 ;
92	+	args_info->output_given = 0 ;
93	+	args_info->step_given = 0 ;
94	+	args_info->nbins_given = 0 ;
95	+	args_info->nbins_x_given = 0 ;
96	+	args_info->nbins_y_given = 0 ;
97	+	args_info->nanglebins_given = 0 ;
98	+	args_info->length_given = 0 ;
99	+	args_info->rcut_given = 0 ;
100	+	args_info->zoffset_given = 0 ;
101	+	args_info->sele1_given = 0 ;
102	+	args_info->sele2_given = 0 ;
103	+	args_info->sele3_given = 0 ;
104	+	args_info->refsele_given = 0 ;
105	+	args_info->molname_given = 0 ;
106	+	args_info->begin_given = 0 ;
107	+	args_info->end_given = 0 ;
108	+	args_info->radius_given = 0 ;
109	+	args_info->bo_given = 0 ;
110	+	args_info->bor_given = 0 ;
111	+	args_info->bad_given = 0 ;
112	+	args_info->gofr_given = 0 ;
113	+	args_info->gofz_given = 0 ;
114	+	args_info->r_theta_given = 0 ;
115	+	args_info->r_omega_given = 0 ;
116	+	args_info->theta_omega_given = 0 ;
117	+	args_info->gxyz_given = 0 ;
118	+	args_info->p2_given = 0 ;
119	+	args_info->rp2_given = 0 ;
120	+	args_info->scd_given = 0 ;
121	+	args_info->density_given = 0 ;
122	+	args_info->slab_density_given = 0 ;
123	+	args_info->hxy_given = 0 ;
124	+	args_info->rho_r_given = 0 ;
125	+	args_info->hullvol_given = 0 ;
126	+	args_info->staticProps_group_counter = 0 ;
127	+	}
128	+
129	+	static
130	+	void clear_args (struct gengetopt_args_info *args_info)
131	+	{
132	+	args_info->input_arg = NULL;
133	+	args_info->input_orig = NULL;
134	+	args_info->output_arg = NULL;
135	+	args_info->output_orig = NULL;
136	+	args_info->step_arg = 1;
137	+	args_info->step_orig = NULL;
138	+	args_info->nbins_arg = 100;
139	+	args_info->nbins_orig = NULL;
140	+	args_info->nbins_x_arg = 100;
141	+	args_info->nbins_x_orig = NULL;
142	+	args_info->nbins_y_arg = 100;
143	+	args_info->nbins_y_orig = NULL;
144	+	args_info->nanglebins_arg = 50;
145	+	args_info->nanglebins_orig = NULL;
146	+	args_info->length_orig = NULL;
147	+	args_info->rcut_orig = NULL;
148	+	args_info->zoffset_arg = 0;
149	+	args_info->zoffset_orig = NULL;
150	+	args_info->sele1_arg = NULL;
151	+	args_info->sele1_orig = NULL;
152	+	args_info->sele2_arg = NULL;
153	+	args_info->sele2_orig = NULL;
154	+	args_info->sele3_arg = NULL;
155	+	args_info->sele3_orig = NULL;
156	+	args_info->refsele_arg = NULL;
157	+	args_info->refsele_orig = NULL;
158	+	args_info->molname_arg = NULL;
159	+	args_info->molname_orig = NULL;
160	+	args_info->begin_orig = NULL;
161	+	args_info->end_orig = NULL;
162	+	args_info->radius_orig = NULL;
163	+
164	+	}
165	+
166	+	static
167	+	void init_args_info(struct gengetopt_args_info *args_info)
168	+	{
169	+	args_info->help_help = gengetopt_args_info_help[0] ;
170	+	args_info->version_help = gengetopt_args_info_help[1] ;
171	+	args_info->input_help = gengetopt_args_info_help[2] ;
172	+	args_info->output_help = gengetopt_args_info_help[3] ;
173	+	args_info->step_help = gengetopt_args_info_help[4] ;
174	+	args_info->nbins_help = gengetopt_args_info_help[5] ;
175	+	args_info->nbins_x_help = gengetopt_args_info_help[6] ;
176	+	args_info->nbins_y_help = gengetopt_args_info_help[7] ;
177	+	args_info->nanglebins_help = gengetopt_args_info_help[8] ;
178	+	args_info->length_help = gengetopt_args_info_help[9] ;
179	+	args_info->rcut_help = gengetopt_args_info_help[10] ;
180	+	args_info->zoffset_help = gengetopt_args_info_help[11] ;
181	+	args_info->sele1_help = gengetopt_args_info_help[12] ;
182	+	args_info->sele2_help = gengetopt_args_info_help[13] ;
183	+	args_info->sele3_help = gengetopt_args_info_help[14] ;
184	+	args_info->refsele_help = gengetopt_args_info_help[15] ;
185	+	args_info->molname_help = gengetopt_args_info_help[16] ;
186	+	args_info->begin_help = gengetopt_args_info_help[17] ;
187	+	args_info->end_help = gengetopt_args_info_help[18] ;
188	+	args_info->radius_help = gengetopt_args_info_help[19] ;
189	+	args_info->bo_help = gengetopt_args_info_help[20] ;
190	+	args_info->bor_help = gengetopt_args_info_help[21] ;
191	+	args_info->bad_help = gengetopt_args_info_help[22] ;
192	+	args_info->gofr_help = gengetopt_args_info_help[23] ;
193	+	args_info->gofz_help = gengetopt_args_info_help[24] ;
194	+	args_info->r_theta_help = gengetopt_args_info_help[25] ;
195	+	args_info->r_omega_help = gengetopt_args_info_help[26] ;
196	+	args_info->theta_omega_help = gengetopt_args_info_help[27] ;
197	+	args_info->gxyz_help = gengetopt_args_info_help[28] ;
198	+	args_info->p2_help = gengetopt_args_info_help[29] ;
199	+	args_info->rp2_help = gengetopt_args_info_help[30] ;
200	+	args_info->scd_help = gengetopt_args_info_help[31] ;
201	+	args_info->density_help = gengetopt_args_info_help[32] ;
202	+	args_info->slab_density_help = gengetopt_args_info_help[33] ;
203	+	args_info->hxy_help = gengetopt_args_info_help[34] ;
204	+	args_info->rho_r_help = gengetopt_args_info_help[35] ;
205	+	args_info->hullvol_help = gengetopt_args_info_help[36] ;
206	+
207	+	}
208	+
209		void
210		cmdline_parser_print_version (void)
211		{
#	Line 31 | Line 215 | cmdline_parser_print_help (void)
215		void
216		cmdline_parser_print_help (void)
217		{
218	+	int i = 0;
219		cmdline_parser_print_version ();
220	<	printf("\n"
221	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
222	<	printf("\n");
223	<	printf("  -h, --help                      Print help and exit\n");
224	<	printf("  -V, --version                   Print version and exit\n");
225	<	printf("  -i, --input=filename            input dump file\n");
226	<	printf("  -o, --output=filename           output file name\n");
227	<	printf("  -n, --step=INT                  process every n frame  (default=`1')\n");
228	<	printf("  -r, --nrbins=INT                number of bins for distance  (default=`100')\n");
229	<	printf("  -a, --nanglebins=INT            number of bins for cos(angle)  (default=\n                                    `50')\n");
230	<	printf("  -l, --length=DOUBLE             maximum length (Defaults to 1/2 smallest \n                                    length of first frame)\n");
46	<	printf("      --sele1=selection script    select the first stuntdouble set\n");
47	<	printf("      --sele2=selection script    select the second stuntdouble set\n");
48	<	printf("      --sele3=selection script    select the third stuntdouble set\n");
49	<	printf("      --refsele=selection script  select reference (use and only use with \n                                    --gxyz)\n");
50	<	printf("      --molname=STRING            molecule name\n");
51	<	printf("      --begin=INT                 begin interanl index\n");
52	<	printf("      --end=INT                   end internal index\n");
53	<	printf("\n");
54	<	printf(" Group: staticProps  an option of this group is required\n");
55	<	printf("      --gofr                      g(r)\n");
56	<	printf("      --r_theta                   g(r, cos(theta))\n");
57	<	printf("      --r_omega                   g(r, cos(omega))\n");
58	<	printf("      --theta_omega               g(cos(theta), cos(omega))\n");
59	<	printf("      --gxyz                      g(x, y, z)\n");
60	<	printf("      --p2                        p2 order parameter (--sele1 and --sele2 must \n                                    be specified)\n");
61	<	printf("      --scd                       scd order parameter(either --sele1, --sele2, \n                                    --sele3 are specified or --molname, \n                                    --begin, --end are specified)\n");
62	<	printf("      --density                   density plot (--sele1 must be specified)\n");
220	>
221	>	if (strlen(gengetopt_args_info_purpose) > 0)
222	>	printf("\n%s\n", gengetopt_args_info_purpose);
223	>
224	>	printf("\n%s\n\n", gengetopt_args_info_usage);
225	>
226	>	if (strlen(gengetopt_args_info_description) > 0)
227	>	printf("%s\n", gengetopt_args_info_description);
228	>
229	>	while (gengetopt_args_info_help[i])
230	>	printf("%s\n", gengetopt_args_info_help[i++]);
231		}
232
233	+	void
234	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
235	+	{
236	+	clear_given (args_info);
237	+	clear_args (args_info);
238	+	init_args_info (args_info);
239
240	<	static char *gengetopt_strdup (const char *s);
240	>	args_info->inputs = NULL;
241	>	args_info->inputs_num = 0;
242	>	}
243	>
244	>	static void
245	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
246	>	{
247	>
248	>	unsigned int i;
249	>	if (args_info->input_arg)
250	>	{
251	>	free (args_info->input_arg); /* free previous argument */
252	>	args_info->input_arg = 0;
253	>	}
254	>	if (args_info->input_orig)
255	>	{
256	>	free (args_info->input_orig); /* free previous argument */
257	>	args_info->input_orig = 0;
258	>	}
259	>	if (args_info->output_arg)
260	>	{
261	>	free (args_info->output_arg); /* free previous argument */
262	>	args_info->output_arg = 0;
263	>	}
264	>	if (args_info->output_orig)
265	>	{
266	>	free (args_info->output_orig); /* free previous argument */
267	>	args_info->output_orig = 0;
268	>	}
269	>	if (args_info->step_orig)
270	>	{
271	>	free (args_info->step_orig); /* free previous argument */
272	>	args_info->step_orig = 0;
273	>	}
274	>	if (args_info->nbins_orig)
275	>	{
276	>	free (args_info->nbins_orig); /* free previous argument */
277	>	args_info->nbins_orig = 0;
278	>	}
279	>	if (args_info->nbins_x_orig)
280	>	{
281	>	free (args_info->nbins_x_orig); /* free previous argument */
282	>	args_info->nbins_x_orig = 0;
283	>	}
284	>	if (args_info->nbins_y_orig)
285	>	{
286	>	free (args_info->nbins_y_orig); /* free previous argument */
287	>	args_info->nbins_y_orig = 0;
288	>	}
289	>	if (args_info->nanglebins_orig)
290	>	{
291	>	free (args_info->nanglebins_orig); /* free previous argument */
292	>	args_info->nanglebins_orig = 0;
293	>	}
294	>	if (args_info->length_orig)
295	>	{
296	>	free (args_info->length_orig); /* free previous argument */
297	>	args_info->length_orig = 0;
298	>	}
299	>	if (args_info->rcut_orig)
300	>	{
301	>	free (args_info->rcut_orig); /* free previous argument */
302	>	args_info->rcut_orig = 0;
303	>	}
304	>	if (args_info->zoffset_orig)
305	>	{
306	>	free (args_info->zoffset_orig); /* free previous argument */
307	>	args_info->zoffset_orig = 0;
308	>	}
309	>	if (args_info->sele1_arg)
310	>	{
311	>	free (args_info->sele1_arg); /* free previous argument */
312	>	args_info->sele1_arg = 0;
313	>	}
314	>	if (args_info->sele1_orig)
315	>	{
316	>	free (args_info->sele1_orig); /* free previous argument */
317	>	args_info->sele1_orig = 0;
318	>	}
319	>	if (args_info->sele2_arg)
320	>	{
321	>	free (args_info->sele2_arg); /* free previous argument */
322	>	args_info->sele2_arg = 0;
323	>	}
324	>	if (args_info->sele2_orig)
325	>	{
326	>	free (args_info->sele2_orig); /* free previous argument */
327	>	args_info->sele2_orig = 0;
328	>	}
329	>	if (args_info->sele3_arg)
330	>	{
331	>	free (args_info->sele3_arg); /* free previous argument */
332	>	args_info->sele3_arg = 0;
333	>	}
334	>	if (args_info->sele3_orig)
335	>	{
336	>	free (args_info->sele3_orig); /* free previous argument */
337	>	args_info->sele3_orig = 0;
338	>	}
339	>	if (args_info->refsele_arg)
340	>	{
341	>	free (args_info->refsele_arg); /* free previous argument */
342	>	args_info->refsele_arg = 0;
343	>	}
344	>	if (args_info->refsele_orig)
345	>	{
346	>	free (args_info->refsele_orig); /* free previous argument */
347	>	args_info->refsele_orig = 0;
348	>	}
349	>	if (args_info->molname_arg)
350	>	{
351	>	free (args_info->molname_arg); /* free previous argument */
352	>	args_info->molname_arg = 0;
353	>	}
354	>	if (args_info->molname_orig)
355	>	{
356	>	free (args_info->molname_orig); /* free previous argument */
357	>	args_info->molname_orig = 0;
358	>	}
359	>	if (args_info->begin_orig)
360	>	{
361	>	free (args_info->begin_orig); /* free previous argument */
362	>	args_info->begin_orig = 0;
363	>	}
364	>	if (args_info->end_orig)
365	>	{
366	>	free (args_info->end_orig); /* free previous argument */
367	>	args_info->end_orig = 0;
368	>	}
369	>	if (args_info->radius_orig)
370	>	{
371	>	free (args_info->radius_orig); /* free previous argument */
372	>	args_info->radius_orig = 0;
373	>	}
374	>
375	>	for (i = 0; i < args_info->inputs_num; ++i)
376	>	free (args_info->inputs [i]);
377	>
378	>	if (args_info->inputs_num)
379	>	free (args_info->inputs);
380	>
381	>	clear_given (args_info);
382	>	}
383	>
384	>	int
385	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
386	>	{
387	>	FILE *outfile;
388	>	int i = 0;
389	>
390	>	outfile = fopen(filename, "w");
391	>
392	>	if (!outfile)
393	>	{
394	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
395	>	return EXIT_FAILURE;
396	>	}
397	>
398	>	if (args_info->help_given) {
399	>	fprintf(outfile, "%s\n", "help");
400	>	}
401	>	if (args_info->version_given) {
402	>	fprintf(outfile, "%s\n", "version");
403	>	}
404	>	if (args_info->input_given) {
405	>	if (args_info->input_orig) {
406	>	fprintf(outfile, "%s=\"%s\"\n", "input", args_info->input_orig);
407	>	} else {
408	>	fprintf(outfile, "%s\n", "input");
409	>	}
410	>	}
411	>	if (args_info->output_given) {
412	>	if (args_info->output_orig) {
413	>	fprintf(outfile, "%s=\"%s\"\n", "output", args_info->output_orig);
414	>	} else {
415	>	fprintf(outfile, "%s\n", "output");
416	>	}
417	>	}
418	>	if (args_info->step_given) {
419	>	if (args_info->step_orig) {
420	>	fprintf(outfile, "%s=\"%s\"\n", "step", args_info->step_orig);
421	>	} else {
422	>	fprintf(outfile, "%s\n", "step");
423	>	}
424	>	}
425	>	if (args_info->nbins_given) {
426	>	if (args_info->nbins_orig) {
427	>	fprintf(outfile, "%s=\"%s\"\n", "nbins", args_info->nbins_orig);
428	>	} else {
429	>	fprintf(outfile, "%s\n", "nbins");
430	>	}
431	>	}
432	>	if (args_info->nbins_x_given) {
433	>	if (args_info->nbins_x_orig) {
434	>	fprintf(outfile, "%s=\"%s\"\n", "nbins_x", args_info->nbins_x_orig);
435	>	} else {
436	>	fprintf(outfile, "%s\n", "nbins_x");
437	>	}
438	>	}
439	>	if (args_info->nbins_y_given) {
440	>	if (args_info->nbins_y_orig) {
441	>	fprintf(outfile, "%s=\"%s\"\n", "nbins_y", args_info->nbins_y_orig);
442	>	} else {
443	>	fprintf(outfile, "%s\n", "nbins_y");
444	>	}
445	>	}
446	>	if (args_info->nanglebins_given) {
447	>	if (args_info->nanglebins_orig) {
448	>	fprintf(outfile, "%s=\"%s\"\n", "nanglebins", args_info->nanglebins_orig);
449	>	} else {
450	>	fprintf(outfile, "%s\n", "nanglebins");
451	>	}
452	>	}
453	>	if (args_info->length_given) {
454	>	if (args_info->length_orig) {
455	>	fprintf(outfile, "%s=\"%s\"\n", "length", args_info->length_orig);
456	>	} else {
457	>	fprintf(outfile, "%s\n", "length");
458	>	}
459	>	}
460	>	if (args_info->rcut_given) {
461	>	if (args_info->rcut_orig) {
462	>	fprintf(outfile, "%s=\"%s\"\n", "rcut", args_info->rcut_orig);
463	>	} else {
464	>	fprintf(outfile, "%s\n", "rcut");
465	>	}
466	>	}
467	>	if (args_info->zoffset_given) {
468	>	if (args_info->zoffset_orig) {
469	>	fprintf(outfile, "%s=\"%s\"\n", "zoffset", args_info->zoffset_orig);
470	>	} else {
471	>	fprintf(outfile, "%s\n", "zoffset");
472	>	}
473	>	}
474	>	if (args_info->sele1_given) {
475	>	if (args_info->sele1_orig) {
476	>	fprintf(outfile, "%s=\"%s\"\n", "sele1", args_info->sele1_orig);
477	>	} else {
478	>	fprintf(outfile, "%s\n", "sele1");
479	>	}
480	>	}
481	>	if (args_info->sele2_given) {
482	>	if (args_info->sele2_orig) {
483	>	fprintf(outfile, "%s=\"%s\"\n", "sele2", args_info->sele2_orig);
484	>	} else {
485	>	fprintf(outfile, "%s\n", "sele2");
486	>	}
487	>	}
488	>	if (args_info->sele3_given) {
489	>	if (args_info->sele3_orig) {
490	>	fprintf(outfile, "%s=\"%s\"\n", "sele3", args_info->sele3_orig);
491	>	} else {
492	>	fprintf(outfile, "%s\n", "sele3");
493	>	}
494	>	}
495	>	if (args_info->refsele_given) {
496	>	if (args_info->refsele_orig) {
497	>	fprintf(outfile, "%s=\"%s\"\n", "refsele", args_info->refsele_orig);
498	>	} else {
499	>	fprintf(outfile, "%s\n", "refsele");
500	>	}
501	>	}
502	>	if (args_info->molname_given) {
503	>	if (args_info->molname_orig) {
504	>	fprintf(outfile, "%s=\"%s\"\n", "molname", args_info->molname_orig);
505	>	} else {
506	>	fprintf(outfile, "%s\n", "molname");
507	>	}
508	>	}
509	>	if (args_info->begin_given) {
510	>	if (args_info->begin_orig) {
511	>	fprintf(outfile, "%s=\"%s\"\n", "begin", args_info->begin_orig);
512	>	} else {
513	>	fprintf(outfile, "%s\n", "begin");
514	>	}
515	>	}
516	>	if (args_info->end_given) {
517	>	if (args_info->end_orig) {
518	>	fprintf(outfile, "%s=\"%s\"\n", "end", args_info->end_orig);
519	>	} else {
520	>	fprintf(outfile, "%s\n", "end");
521	>	}
522	>	}
523	>	if (args_info->radius_given) {
524	>	if (args_info->radius_orig) {
525	>	fprintf(outfile, "%s=\"%s\"\n", "radius", args_info->radius_orig);
526	>	} else {
527	>	fprintf(outfile, "%s\n", "radius");
528	>	}
529	>	}
530	>	if (args_info->bo_given) {
531	>	fprintf(outfile, "%s\n", "bo");
532	>	}
533	>	if (args_info->bor_given) {
534	>	fprintf(outfile, "%s\n", "bor");
535	>	}
536	>	if (args_info->bad_given) {
537	>	fprintf(outfile, "%s\n", "bad");
538	>	}
539	>	if (args_info->gofr_given) {
540	>	fprintf(outfile, "%s\n", "gofr");
541	>	}
542	>	if (args_info->gofz_given) {
543	>	fprintf(outfile, "%s\n", "gofz");
544	>	}
545	>	if (args_info->r_theta_given) {
546	>	fprintf(outfile, "%s\n", "r_theta");
547	>	}
548	>	if (args_info->r_omega_given) {
549	>	fprintf(outfile, "%s\n", "r_omega");
550	>	}
551	>	if (args_info->theta_omega_given) {
552	>	fprintf(outfile, "%s\n", "theta_omega");
553	>	}
554	>	if (args_info->gxyz_given) {
555	>	fprintf(outfile, "%s\n", "gxyz");
556	>	}
557	>	if (args_info->p2_given) {
558	>	fprintf(outfile, "%s\n", "p2");
559	>	}
560	>	if (args_info->rp2_given) {
561	>	fprintf(outfile, "%s\n", "rp2");
562	>	}
563	>	if (args_info->scd_given) {
564	>	fprintf(outfile, "%s\n", "scd");
565	>	}
566	>	if (args_info->density_given) {
567	>	fprintf(outfile, "%s\n", "density");
568	>	}
569	>	if (args_info->slab_density_given) {
570	>	fprintf(outfile, "%s\n", "slab_density");
571	>	}
572	>	if (args_info->hxy_given) {
573	>	fprintf(outfile, "%s\n", "hxy");
574	>	}
575	>	if (args_info->rho_r_given) {
576	>	fprintf(outfile, "%s\n", "rho_r");
577	>	}
578	>	if (args_info->hullvol_given) {
579	>	fprintf(outfile, "%s\n", "hullvol");
580	>	}
581	>
582	>	fclose (outfile);
583
584	+	i = EXIT_SUCCESS;
585	+	return i;
586	+	}
587	+
588	+	void
589	+	cmdline_parser_free (struct gengetopt_args_info *args_info)
590	+	{
591	+	cmdline_parser_release (args_info);
592	+	}
593	+
594	+
595		/* gengetopt_strdup() */
596		/* strdup.c replacement of strdup, which is not standard */
597		char *
598		gengetopt_strdup (const char *s)
599		{
600	<	char *result = (char*)malloc(strlen(s) + 1);
600	>	char *result = NULL;
601	>	if (!s)
602	>	return result;
603	>
604	>	result = (char*)malloc(strlen(s) + 1);
605		if (result == (char*)0)
606		return (char*)0;
607		strcpy(result, s);
608		return result;
609		}
610
611	<	int
612	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
82	<	{
83	<	int c;        /* Character of the parsed option.  */
84	<	int missing_required_options = 0;
85	<	int staticProps_group_counter = 0;
86	<
611	>	static void
612	>	reset_group_staticProps(struct gengetopt_args_info *args_info);
613
614	<	args_info->help_given = 0 ;
615	<	args_info->version_given = 0 ;
616	<	args_info->input_given = 0 ;
617	<	args_info->output_given = 0 ;
618	<	args_info->step_given = 0 ;
619	<	args_info->nrbins_given = 0 ;
620	<	args_info->nanglebins_given = 0 ;
621	<	args_info->length_given = 0 ;
622	<	args_info->sele1_given = 0 ;
97	<	args_info->sele2_given = 0 ;
98	<	args_info->sele3_given = 0 ;
99	<	args_info->refsele_given = 0 ;
100	<	args_info->molname_given = 0 ;
101	<	args_info->begin_given = 0 ;
102	<	args_info->end_given = 0 ;
614	>	static void
615	>	reset_group_staticProps(struct gengetopt_args_info *args_info)
616	>	{
617	>	if (! args_info->staticProps_group_counter)
618	>	return;
619	>
620	>	args_info->bo_given = 0 ;
621	>	args_info->bor_given = 0 ;
622	>	args_info->bad_given = 0 ;
623		args_info->gofr_given = 0 ;
624	+	args_info->gofz_given = 0 ;
625		args_info->r_theta_given = 0 ;
626		args_info->r_omega_given = 0 ;
627		args_info->theta_omega_given = 0 ;
628		args_info->gxyz_given = 0 ;
629		args_info->p2_given = 0 ;
630	+	args_info->rp2_given = 0 ;
631		args_info->scd_given = 0 ;
632		args_info->density_given = 0 ;
633	<	#define clear_args() { \
634	<	args_info->input_arg = NULL; \
635	<	args_info->output_arg = NULL; \
636	<	args_info->step_arg = 1 ;\
637	<	args_info->nrbins_arg = 100 ;\
638	<	args_info->nanglebins_arg = 50 ;\
117	<	args_info->sele1_arg = NULL; \
118	<	args_info->sele2_arg = NULL; \
119	<	args_info->sele3_arg = NULL; \
120	<	args_info->refsele_arg = NULL; \
121	<	args_info->molname_arg = NULL; \
633	>	args_info->slab_density_given = 0 ;
634	>	args_info->hxy_given = 0 ;
635	>	args_info->rho_r_given = 0 ;
636	>	args_info->hullvol_given = 0 ;
637	>
638	>	args_info->staticProps_group_counter = 0;
639		}
640
641	<	clear_args();
641	>	int
642	>	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
643	>	{
644	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
645	>	}
646
647	+	int
648	+	cmdline_parser2 (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
649	+	{
650	+	int result;
651	+
652	+	result = cmdline_parser_internal (argc, argv, args_info, override, initialize, check_required, NULL);
653	+
654	+	if (result == EXIT_FAILURE)
655	+	{
656	+	cmdline_parser_free (args_info);
657	+	exit (EXIT_FAILURE);
658	+	}
659	+
660	+	return result;
661	+	}
662	+
663	+	int
664	+	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
665	+	{
666	+	int result = EXIT_SUCCESS;
667	+
668	+	if (cmdline_parser_required2(args_info, prog_name, NULL) > 0)
669	+	result = EXIT_FAILURE;
670	+
671	+	if (result == EXIT_FAILURE)
672	+	{
673	+	cmdline_parser_free (args_info);
674	+	exit (EXIT_FAILURE);
675	+	}
676	+
677	+	return result;
678	+	}
679	+
680	+	int
681	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
682	+	{
683	+	int error = 0;
684	+
685	+	/* checks for required options */
686	+	if (! args_info->input_given)
687	+	{
688	+	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
689	+	error = 1;
690	+	}
691	+
692	+	if (args_info->staticProps_group_counter == 0)
693	+	{
694	+	fprintf (stderr, "%s: %d options of group staticProps were given. One is required.%s\n", prog_name, args_info->staticProps_group_counter, (additional_error ? additional_error : ""));
695	+	error = 1;
696	+	}
697	+
698	+
699	+	/* checks for dependences among options */
700	+
701	+	return error;
702	+	}
703	+
704	+	int
705	+	cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required, const char *additional_error)
706	+	{
707	+	int c;        /* Character of the parsed option.  */
708	+
709	+	int error = 0;
710	+	struct gengetopt_args_info local_args_info;
711	+
712	+	if (initialize)
713	+	cmdline_parser_init (args_info);
714	+
715	+	cmdline_parser_init (&local_args_info);
716	+
717		optarg = 0;
718	<	optind = 1;
718	>	optind = 0;
719		opterr = 1;
720		optopt = '?';
721
#	Line 139 | Line 730 | cmdline_parser (int argc, char * const *argv, struct g
730		{ "input",      1, NULL, 'i' },
731		{ "output",     1, NULL, 'o' },
732		{ "step",       1, NULL, 'n' },
733	<	{ "nrbins",     1, NULL, 'r' },
733	>	{ "nbins",      1, NULL, 'b' },
734	>	{ "nbins_x",    1, NULL, 'x' },
735	>	{ "nbins_y",    1, NULL, 'y' },
736		{ "nanglebins", 1, NULL, 'a' },
737	<	{ "length",     1, NULL, 'l' },
737	>	{ "length",     1, NULL, 0 },
738	>	{ "rcut",       1, NULL, 'c' },
739	>	{ "zoffset",    1, NULL, 'z' },
740		{ "sele1",      1, NULL, 0 },
741		{ "sele2",      1, NULL, 0 },
742		{ "sele3",      1, NULL, 0 },
#	Line 149 | Line 744 | cmdline_parser (int argc, char * const *argv, struct g
744		{ "molname",    1, NULL, 0 },
745		{ "begin",      1, NULL, 0 },
746		{ "end",        1, NULL, 0 },
747	<	{ "gofr",       0, NULL, 0 },
747	>	{ "radius",     1, NULL, 0 },
748	>	{ "bo", 0, NULL, 0 },
749	>	{ "bor",        0, NULL, 0 },
750	>	{ "bad",        0, NULL, 0 },
751	>	{ "gofr",       0, NULL, 'g' },
752	>	{ "gofz",       0, NULL, 0 },
753		{ "r_theta",    0, NULL, 0 },
754		{ "r_omega",    0, NULL, 0 },
755		{ "theta_omega",        0, NULL, 0 },
756		{ "gxyz",       0, NULL, 0 },
757	<	{ "p2", 0, NULL, 0 },
758	<	{ "scd",        0, NULL, 0 },
759	<	{ "density",    0, NULL, 0 },
757	>	{ "p2", 0, NULL, 'p' },
758	>	{ "rp2",        0, NULL, 0 },
759	>	{ "scd",        0, NULL, 's' },
760	>	{ "density",    0, NULL, 'd' },
761	>	{ "slab_density",       0, NULL, 0 },
762	>	{ "hxy",        0, NULL, 0 },
763	>	{ "rho_r",      0, NULL, 0 },
764	>	{ "hullvol",    0, NULL, 0 },
765		{ NULL, 0, NULL, 0 }
766		};
767
768		stop_char = 0;
769	<	c = getopt_long (argc, argv, "hVi:o:n:r:a:l:", long_options, &option_index);
769	>	c = getopt_long (argc, argv, "hVi:o:n:b:x:y:a:c:z:gpsd", long_options, &option_index);
770
771		if (c == -1) break;       /* Exit from `while (1)' loop.  */
772
773		switch (c)
774		{
775		case 'h':       /* Print help and exit.  */
171	–	clear_args ();
776		cmdline_parser_print_help ();
777	+	cmdline_parser_free (&local_args_info);
778		exit (EXIT_SUCCESS);
779
780		case 'V':       /* Print version and exit.  */
176	–	clear_args ();
781		cmdline_parser_print_version ();
782	+	cmdline_parser_free (&local_args_info);
783		exit (EXIT_SUCCESS);
784
785		case 'i':       /* input dump file.  */
786	<	if (args_info->input_given)
786	>	if (local_args_info.input_given)
787		{
788	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
789	<	clear_args ();
185	<	exit (EXIT_FAILURE);
788	>	fprintf (stderr, "%s: `--input' (`-i') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
789	>	goto failure;
790		}
791	+	if (args_info->input_given && ! override)
792	+	continue;
793	+	local_args_info.input_given = 1;
794		args_info->input_given = 1;
795	+	if (args_info->input_arg)
796	+	free (args_info->input_arg); /* free previous string */
797		args_info->input_arg = gengetopt_strdup (optarg);
798	+	if (args_info->input_orig)
799	+	free (args_info->input_orig); /* free previous string */
800	+	args_info->input_orig = gengetopt_strdup (optarg);
801		break;
802
803		case 'o':       /* output file name.  */
804	<	if (args_info->output_given)
804	>	if (local_args_info.output_given)
805		{
806	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
807	<	clear_args ();
196	<	exit (EXIT_FAILURE);
806	>	fprintf (stderr, "%s: `--output' (`-o') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
807	>	goto failure;
808		}
809	+	if (args_info->output_given && ! override)
810	+	continue;
811	+	local_args_info.output_given = 1;
812		args_info->output_given = 1;
813	+	if (args_info->output_arg)
814	+	free (args_info->output_arg); /* free previous string */
815		args_info->output_arg = gengetopt_strdup (optarg);
816	+	if (args_info->output_orig)
817	+	free (args_info->output_orig); /* free previous string */
818	+	args_info->output_orig = gengetopt_strdup (optarg);
819		break;
820
821		case 'n':       /* process every n frame.  */
822	<	if (args_info->step_given)
822	>	if (local_args_info.step_given)
823		{
824	<	fprintf (stderr, "%s: `--step' (`-n') option given more than once\n", CMDLINE_PARSER_PACKAGE);
825	<	clear_args ();
207	<	exit (EXIT_FAILURE);
824	>	fprintf (stderr, "%s: `--step' (`-n') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
825	>	goto failure;
826		}
827	+	if (args_info->step_given && ! override)
828	+	continue;
829	+	local_args_info.step_given = 1;
830		args_info->step_given = 1;
831	<	args_info->step_arg = strtol (optarg,&stop_char,0);
831	>	args_info->step_arg = strtol (optarg, &stop_char, 0);
832	>	if (!(stop_char && *stop_char == '\0')) {
833	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
834	>	goto failure;
835	>	}
836	>	if (args_info->step_orig)
837	>	free (args_info->step_orig); /* free previous string */
838	>	args_info->step_orig = gengetopt_strdup (optarg);
839		break;
840
841	<	case 'r':       /* number of bins for distance.  */
842	<	if (args_info->nrbins_given)
841	>	case 'b':       /* number of bins (general purpose).  */
842	>	if (local_args_info.nbins_given)
843		{
844	<	fprintf (stderr, "%s: `--nrbins' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
845	<	clear_args ();
218	<	exit (EXIT_FAILURE);
844	>	fprintf (stderr, "%s: `--nbins' (`-b') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
845	>	goto failure;
846		}
847	<	args_info->nrbins_given = 1;
848	<	args_info->nrbins_arg = strtol (optarg,&stop_char,0);
847	>	if (args_info->nbins_given && ! override)
848	>	continue;
849	>	local_args_info.nbins_given = 1;
850	>	args_info->nbins_given = 1;
851	>	args_info->nbins_arg = strtol (optarg, &stop_char, 0);
852	>	if (!(stop_char && *stop_char == '\0')) {
853	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
854	>	goto failure;
855	>	}
856	>	if (args_info->nbins_orig)
857	>	free (args_info->nbins_orig); /* free previous string */
858	>	args_info->nbins_orig = gengetopt_strdup (optarg);
859		break;
860
861	+	case 'x':       /* number of bins in x axis.  */
862	+	if (local_args_info.nbins_x_given)
863	+	{
864	+	fprintf (stderr, "%s: `--nbins_x' (`-x') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
865	+	goto failure;
866	+	}
867	+	if (args_info->nbins_x_given && ! override)
868	+	continue;
869	+	local_args_info.nbins_x_given = 1;
870	+	args_info->nbins_x_given = 1;
871	+	args_info->nbins_x_arg = strtol (optarg, &stop_char, 0);
872	+	if (!(stop_char && *stop_char == '\0')) {
873	+	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
874	+	goto failure;
875	+	}
876	+	if (args_info->nbins_x_orig)
877	+	free (args_info->nbins_x_orig); /* free previous string */
878	+	args_info->nbins_x_orig = gengetopt_strdup (optarg);
879	+	break;
880	+
881	+	case 'y':       /* number of bins in y axis.  */
882	+	if (local_args_info.nbins_y_given)
883	+	{
884	+	fprintf (stderr, "%s: `--nbins_y' (`-y') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
885	+	goto failure;
886	+	}
887	+	if (args_info->nbins_y_given && ! override)
888	+	continue;
889	+	local_args_info.nbins_y_given = 1;
890	+	args_info->nbins_y_given = 1;
891	+	args_info->nbins_y_arg = strtol (optarg, &stop_char, 0);
892	+	if (!(stop_char && *stop_char == '\0')) {
893	+	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
894	+	goto failure;
895	+	}
896	+	if (args_info->nbins_y_orig)
897	+	free (args_info->nbins_y_orig); /* free previous string */
898	+	args_info->nbins_y_orig = gengetopt_strdup (optarg);
899	+	break;
900	+
901		case 'a':       /* number of bins for cos(angle).  */
902	<	if (args_info->nanglebins_given)
902	>	if (local_args_info.nanglebins_given)
903		{
904	<	fprintf (stderr, "%s: `--nanglebins' (`-a') option given more than once\n", CMDLINE_PARSER_PACKAGE);
905	<	clear_args ();
229	<	exit (EXIT_FAILURE);
904	>	fprintf (stderr, "%s: `--nanglebins' (`-a') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
905	>	goto failure;
906		}
907	+	if (args_info->nanglebins_given && ! override)
908	+	continue;
909	+	local_args_info.nanglebins_given = 1;
910		args_info->nanglebins_given = 1;
911	<	args_info->nanglebins_arg = strtol (optarg,&stop_char,0);
911	>	args_info->nanglebins_arg = strtol (optarg, &stop_char, 0);
912	>	if (!(stop_char && *stop_char == '\0')) {
913	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
914	>	goto failure;
915	>	}
916	>	if (args_info->nanglebins_orig)
917	>	free (args_info->nanglebins_orig); /* free previous string */
918	>	args_info->nanglebins_orig = gengetopt_strdup (optarg);
919		break;
920
921	<	case 'l':       /* maximum length (Defaults to 1/2 smallest length of first frame).  */
922	<	if (args_info->length_given)
921	>	case 'c':       /* cutoff radius (rcut).  */
922	>	if (local_args_info.rcut_given)
923		{
924	<	fprintf (stderr, "%s: `--length' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
925	<	clear_args ();
240	<	exit (EXIT_FAILURE);
924	>	fprintf (stderr, "%s: `--rcut' (`-c') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
925	>	goto failure;
926		}
927	<	args_info->length_given = 1;
928	<	args_info->length_arg = strtod (optarg, NULL);
927	>	if (args_info->rcut_given && ! override)
928	>	continue;
929	>	local_args_info.rcut_given = 1;
930	>	args_info->rcut_given = 1;
931	>	args_info->rcut_arg = strtod (optarg, &stop_char);
932	>	if (!(stop_char && *stop_char == '\0')) {
933	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
934	>	goto failure;
935	>	}
936	>	if (args_info->rcut_orig)
937	>	free (args_info->rcut_orig); /* free previous string */
938	>	args_info->rcut_orig = gengetopt_strdup (optarg);
939		break;
940
941	+	case 'z':       /* Where to set the zero for the slab_density calculation.  */
942	+	if (local_args_info.zoffset_given)
943	+	{
944	+	fprintf (stderr, "%s: `--zoffset' (`-z') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
945	+	goto failure;
946	+	}
947	+	if (args_info->zoffset_given && ! override)
948	+	continue;
949	+	local_args_info.zoffset_given = 1;
950	+	args_info->zoffset_given = 1;
951	+	args_info->zoffset_arg = strtod (optarg, &stop_char);
952	+	if (!(stop_char && *stop_char == '\0')) {
953	+	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
954	+	goto failure;
955	+	}
956	+	if (args_info->zoffset_orig)
957	+	free (args_info->zoffset_orig); /* free previous string */
958	+	args_info->zoffset_orig = gengetopt_strdup (optarg);
959	+	break;
960
961	+	case 'g':       /* g(r).  */
962	+	if (local_args_info.gofr_given)
963	+	{
964	+	fprintf (stderr, "%s: `--gofr' (`-g') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
965	+	goto failure;
966	+	}
967	+	if (args_info->gofr_given && ! override)
968	+	continue;
969	+	local_args_info.gofr_given = 1;
970	+	args_info->gofr_given = 1;
971	+	if (args_info->staticProps_group_counter && override)
972	+	reset_group_staticProps (args_info);
973	+	args_info->staticProps_group_counter += 1;
974	+	break;
975	+
976	+	case 'p':       /* p2 order parameter (--sele1 and --sele2 must be specified).  */
977	+	if (local_args_info.p2_given)
978	+	{
979	+	fprintf (stderr, "%s: `--p2' (`-p') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
980	+	goto failure;
981	+	}
982	+	if (args_info->p2_given && ! override)
983	+	continue;
984	+	local_args_info.p2_given = 1;
985	+	args_info->p2_given = 1;
986	+	if (args_info->staticProps_group_counter && override)
987	+	reset_group_staticProps (args_info);
988	+	args_info->staticProps_group_counter += 1;
989	+	break;
990	+
991	+	case 's':       /* scd order parameter (either --sele1, --sele2, --sele3 are specified or --molname, --begin, --end are specified).  */
992	+	if (local_args_info.scd_given)
993	+	{
994	+	fprintf (stderr, "%s: `--scd' (`-s') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
995	+	goto failure;
996	+	}
997	+	if (args_info->scd_given && ! override)
998	+	continue;
999	+	local_args_info.scd_given = 1;
1000	+	args_info->scd_given = 1;
1001	+	if (args_info->staticProps_group_counter && override)
1002	+	reset_group_staticProps (args_info);
1003	+	args_info->staticProps_group_counter += 1;
1004	+	break;
1005	+
1006	+	case 'd':       /* density plot.  */
1007	+	if (local_args_info.density_given)
1008	+	{
1009	+	fprintf (stderr, "%s: `--density' (`-d') option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1010	+	goto failure;
1011	+	}
1012	+	if (args_info->density_given && ! override)
1013	+	continue;
1014	+	local_args_info.density_given = 1;
1015	+	args_info->density_given = 1;
1016	+	if (args_info->staticProps_group_counter && override)
1017	+	reset_group_staticProps (args_info);
1018	+	args_info->staticProps_group_counter += 1;
1019	+	break;
1020	+
1021	+
1022		case 0: /* Long option with no short option */
1023	+	/* maximum length (Defaults to 1/2 smallest length of first frame).  */
1024	+	if (strcmp (long_options[option_index].name, "length") == 0)
1025	+	{
1026	+	if (local_args_info.length_given)
1027	+	{
1028	+	fprintf (stderr, "%s: `--length' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1029	+	goto failure;
1030	+	}
1031	+	if (args_info->length_given && ! override)
1032	+	continue;
1033	+	local_args_info.length_given = 1;
1034	+	args_info->length_given = 1;
1035	+	args_info->length_arg = strtod (optarg, &stop_char);
1036	+	if (!(stop_char && *stop_char == '\0')) {
1037	+	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
1038	+	goto failure;
1039	+	}
1040	+	if (args_info->length_orig)
1041	+	free (args_info->length_orig); /* free previous string */
1042	+	args_info->length_orig = gengetopt_strdup (optarg);
1043	+	}
1044		/* select the first stuntdouble set.  */
1045	<	if (strcmp (long_options[option_index].name, "sele1") == 0)
1045	>	else if (strcmp (long_options[option_index].name, "sele1") == 0)
1046		{
1047	<	if (args_info->sele1_given)
1047	>	if (local_args_info.sele1_given)
1048		{
1049	<	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1050	<	clear_args ();
255	<	exit (EXIT_FAILURE);
1049	>	fprintf (stderr, "%s: `--sele1' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1050	>	goto failure;
1051		}
1052	+	if (args_info->sele1_given && ! override)
1053	+	continue;
1054	+	local_args_info.sele1_given = 1;
1055		args_info->sele1_given = 1;
1056	+	if (args_info->sele1_arg)
1057	+	free (args_info->sele1_arg); /* free previous string */
1058		args_info->sele1_arg = gengetopt_strdup (optarg);
1059	<	break;
1059	>	if (args_info->sele1_orig)
1060	>	free (args_info->sele1_orig); /* free previous string */
1061	>	args_info->sele1_orig = gengetopt_strdup (optarg);
1062		}
261	–
1063		/* select the second stuntdouble set.  */
1064		else if (strcmp (long_options[option_index].name, "sele2") == 0)
1065		{
1066	<	if (args_info->sele2_given)
1066	>	if (local_args_info.sele2_given)
1067		{
1068	<	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1069	<	clear_args ();
269	<	exit (EXIT_FAILURE);
1068	>	fprintf (stderr, "%s: `--sele2' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1069	>	goto failure;
1070		}
1071	+	if (args_info->sele2_given && ! override)
1072	+	continue;
1073	+	local_args_info.sele2_given = 1;
1074		args_info->sele2_given = 1;
1075	+	if (args_info->sele2_arg)
1076	+	free (args_info->sele2_arg); /* free previous string */
1077		args_info->sele2_arg = gengetopt_strdup (optarg);
1078	<	break;
1078	>	if (args_info->sele2_orig)
1079	>	free (args_info->sele2_orig); /* free previous string */
1080	>	args_info->sele2_orig = gengetopt_strdup (optarg);
1081		}
275	–
1082		/* select the third stuntdouble set.  */
1083		else if (strcmp (long_options[option_index].name, "sele3") == 0)
1084		{
1085	<	if (args_info->sele3_given)
1085	>	if (local_args_info.sele3_given)
1086		{
1087	<	fprintf (stderr, "%s: `--sele3' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1088	<	clear_args ();
283	<	exit (EXIT_FAILURE);
1087	>	fprintf (stderr, "%s: `--sele3' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1088	>	goto failure;
1089		}
1090	+	if (args_info->sele3_given && ! override)
1091	+	continue;
1092	+	local_args_info.sele3_given = 1;
1093		args_info->sele3_given = 1;
1094	+	if (args_info->sele3_arg)
1095	+	free (args_info->sele3_arg); /* free previous string */
1096		args_info->sele3_arg = gengetopt_strdup (optarg);
1097	<	break;
1097	>	if (args_info->sele3_orig)
1098	>	free (args_info->sele3_orig); /* free previous string */
1099	>	args_info->sele3_orig = gengetopt_strdup (optarg);
1100		}
289	–
1101		/* select reference (use and only use with --gxyz).  */
1102		else if (strcmp (long_options[option_index].name, "refsele") == 0)
1103		{
1104	<	if (args_info->refsele_given)
1104	>	if (local_args_info.refsele_given)
1105		{
1106	<	fprintf (stderr, "%s: `--refsele' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1107	<	clear_args ();
297	<	exit (EXIT_FAILURE);
1106	>	fprintf (stderr, "%s: `--refsele' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1107	>	goto failure;
1108		}
1109	+	if (args_info->refsele_given && ! override)
1110	+	continue;
1111	+	local_args_info.refsele_given = 1;
1112		args_info->refsele_given = 1;
1113	+	if (args_info->refsele_arg)
1114	+	free (args_info->refsele_arg); /* free previous string */
1115		args_info->refsele_arg = gengetopt_strdup (optarg);
1116	<	break;
1116	>	if (args_info->refsele_orig)
1117	>	free (args_info->refsele_orig); /* free previous string */
1118	>	args_info->refsele_orig = gengetopt_strdup (optarg);
1119		}
303	–
1120		/* molecule name.  */
1121		else if (strcmp (long_options[option_index].name, "molname") == 0)
1122		{
1123	<	if (args_info->molname_given)
1123	>	if (local_args_info.molname_given)
1124		{
1125	<	fprintf (stderr, "%s: `--molname' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1126	<	clear_args ();
311	<	exit (EXIT_FAILURE);
1125	>	fprintf (stderr, "%s: `--molname' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1126	>	goto failure;
1127		}
1128	+	if (args_info->molname_given && ! override)
1129	+	continue;
1130	+	local_args_info.molname_given = 1;
1131		args_info->molname_given = 1;
1132	+	if (args_info->molname_arg)
1133	+	free (args_info->molname_arg); /* free previous string */
1134		args_info->molname_arg = gengetopt_strdup (optarg);
1135	<	break;
1135	>	if (args_info->molname_orig)
1136	>	free (args_info->molname_orig); /* free previous string */
1137	>	args_info->molname_orig = gengetopt_strdup (optarg);
1138		}
1139	<
318	<	/* begin interanl index.  */
1139	>	/* begin internal index.  */
1140		else if (strcmp (long_options[option_index].name, "begin") == 0)
1141		{
1142	<	if (args_info->begin_given)
1142	>	if (local_args_info.begin_given)
1143		{
1144	<	fprintf (stderr, "%s: `--begin' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1145	<	clear_args ();
325	<	exit (EXIT_FAILURE);
1144	>	fprintf (stderr, "%s: `--begin' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1145	>	goto failure;
1146		}
1147	+	if (args_info->begin_given && ! override)
1148	+	continue;
1149	+	local_args_info.begin_given = 1;
1150		args_info->begin_given = 1;
1151	<	args_info->begin_arg = strtol (optarg,&stop_char,0);
1152	<	break;
1151	>	args_info->begin_arg = strtol (optarg, &stop_char, 0);
1152	>	if (!(stop_char && *stop_char == '\0')) {
1153	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
1154	>	goto failure;
1155	>	}
1156	>	if (args_info->begin_orig)
1157	>	free (args_info->begin_orig); /* free previous string */
1158	>	args_info->begin_orig = gengetopt_strdup (optarg);
1159		}
331	–
1160		/* end internal index.  */
1161		else if (strcmp (long_options[option_index].name, "end") == 0)
1162		{
1163	<	if (args_info->end_given)
1163	>	if (local_args_info.end_given)
1164		{
1165	<	fprintf (stderr, "%s: `--end' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1166	<	clear_args ();
339	<	exit (EXIT_FAILURE);
1165	>	fprintf (stderr, "%s: `--end' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1166	>	goto failure;
1167		}
1168	+	if (args_info->end_given && ! override)
1169	+	continue;
1170	+	local_args_info.end_given = 1;
1171		args_info->end_given = 1;
1172	<	args_info->end_arg = strtol (optarg,&stop_char,0);
1173	<	break;
1172	>	args_info->end_arg = strtol (optarg, &stop_char, 0);
1173	>	if (!(stop_char && *stop_char == '\0')) {
1174	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
1175	>	goto failure;
1176	>	}
1177	>	if (args_info->end_orig)
1178	>	free (args_info->end_orig); /* free previous string */
1179	>	args_info->end_orig = gengetopt_strdup (optarg);
1180		}
1181	<
1182	<	/* g(r).  */
347	<	else if (strcmp (long_options[option_index].name, "gofr") == 0)
1181	>	/* nanoparticle radius.  */
1182	>	else if (strcmp (long_options[option_index].name, "radius") == 0)
1183		{
1184	<	if (args_info->gofr_given)
1185	<	{
1186	<	fprintf (stderr, "%s: `--gofr' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1187	<	clear_args ();
353	<	exit (EXIT_FAILURE);
1184	>	if (local_args_info.radius_given)
1185	>	{
1186	>	fprintf (stderr, "%s: `--radius' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1187	>	goto failure;
1188		}
1189	<	args_info->gofr_given = 1; staticProps_group_counter += 1;
1190	<
1189	>	if (args_info->radius_given && ! override)
1190	>	continue;
1191	>	local_args_info.radius_given = 1;
1192	>	args_info->radius_given = 1;
1193	>	args_info->radius_arg = strtod (optarg, &stop_char);
1194	>	if (!(stop_char && *stop_char == '\0')) {
1195	>	fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg);
1196	>	goto failure;
1197	>	}
1198	>	if (args_info->radius_orig)
1199	>	free (args_info->radius_orig); /* free previous string */
1200	>	args_info->radius_orig = gengetopt_strdup (optarg);
1201	>	}
1202	>	/* bond order parameter (--rcut must be specified).  */
1203	>	else if (strcmp (long_options[option_index].name, "bo") == 0)
1204	>	{
1205	>	if (local_args_info.bo_given)
1206	>	{
1207	>	fprintf (stderr, "%s: `--bo' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1208	>	goto failure;
1209	>	}
1210	>	if (args_info->bo_given && ! override)
1211	>	continue;
1212	>	local_args_info.bo_given = 1;
1213	>	args_info->bo_given = 1;
1214	>	if (args_info->staticProps_group_counter && override)
1215	>	reset_group_staticProps (args_info);
1216	>	args_info->staticProps_group_counter += 1;
1217		break;
1218		}
1219	<
1219	>	/* bond order parameter as a function of radius (--rcut must be specified).  */
1220	>	else if (strcmp (long_options[option_index].name, "bor") == 0)
1221	>	{
1222	>	if (local_args_info.bor_given)
1223	>	{
1224	>	fprintf (stderr, "%s: `--bor' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1225	>	goto failure;
1226	>	}
1227	>	if (args_info->bor_given && ! override)
1228	>	continue;
1229	>	local_args_info.bor_given = 1;
1230	>	args_info->bor_given = 1;
1231	>	if (args_info->staticProps_group_counter && override)
1232	>	reset_group_staticProps (args_info);
1233	>	args_info->staticProps_group_counter += 1;
1234	>	break;
1235	>	}
1236	>	/* N(theta) bond angle density within (--rcut must be specified).  */
1237	>	else if (strcmp (long_options[option_index].name, "bad") == 0)
1238	>	{
1239	>	if (local_args_info.bad_given)
1240	>	{
1241	>	fprintf (stderr, "%s: `--bad' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1242	>	goto failure;
1243	>	}
1244	>	if (args_info->bad_given && ! override)
1245	>	continue;
1246	>	local_args_info.bad_given = 1;
1247	>	args_info->bad_given = 1;
1248	>	if (args_info->staticProps_group_counter && override)
1249	>	reset_group_staticProps (args_info);
1250	>	args_info->staticProps_group_counter += 1;
1251	>	break;
1252	>	}
1253	>	/* g(z).  */
1254	>	else if (strcmp (long_options[option_index].name, "gofz") == 0)
1255	>	{
1256	>	if (local_args_info.gofz_given)
1257	>	{
1258	>	fprintf (stderr, "%s: `--gofz' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1259	>	goto failure;
1260	>	}
1261	>	if (args_info->gofz_given && ! override)
1262	>	continue;
1263	>	local_args_info.gofz_given = 1;
1264	>	args_info->gofz_given = 1;
1265	>	if (args_info->staticProps_group_counter && override)
1266	>	reset_group_staticProps (args_info);
1267	>	args_info->staticProps_group_counter += 1;
1268	>	break;
1269	>	}
1270		/* g(r, cos(theta)).  */
1271		else if (strcmp (long_options[option_index].name, "r_theta") == 0)
1272		{
1273	<	if (args_info->r_theta_given)
1273	>	if (local_args_info.r_theta_given)
1274		{
1275	<	fprintf (stderr, "%s: `--r_theta' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1276	<	clear_args ();
367	<	exit (EXIT_FAILURE);
1275	>	fprintf (stderr, "%s: `--r_theta' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1276	>	goto failure;
1277		}
1278	<	args_info->r_theta_given = 1; staticProps_group_counter += 1;
1279	<
1278	>	if (args_info->r_theta_given && ! override)
1279	>	continue;
1280	>	local_args_info.r_theta_given = 1;
1281	>	args_info->r_theta_given = 1;
1282	>	if (args_info->staticProps_group_counter && override)
1283	>	reset_group_staticProps (args_info);
1284	>	args_info->staticProps_group_counter += 1;
1285		break;
1286		}
373	–
1287		/* g(r, cos(omega)).  */
1288		else if (strcmp (long_options[option_index].name, "r_omega") == 0)
1289		{
1290	<	if (args_info->r_omega_given)
1290	>	if (local_args_info.r_omega_given)
1291		{
1292	<	fprintf (stderr, "%s: `--r_omega' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1293	<	clear_args ();
381	<	exit (EXIT_FAILURE);
1292	>	fprintf (stderr, "%s: `--r_omega' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1293	>	goto failure;
1294		}
1295	<	args_info->r_omega_given = 1; staticProps_group_counter += 1;
1296	<
1295	>	if (args_info->r_omega_given && ! override)
1296	>	continue;
1297	>	local_args_info.r_omega_given = 1;
1298	>	args_info->r_omega_given = 1;
1299	>	if (args_info->staticProps_group_counter && override)
1300	>	reset_group_staticProps (args_info);
1301	>	args_info->staticProps_group_counter += 1;
1302		break;
1303		}
387	–
1304		/* g(cos(theta), cos(omega)).  */
1305		else if (strcmp (long_options[option_index].name, "theta_omega") == 0)
1306		{
1307	<	if (args_info->theta_omega_given)
1307	>	if (local_args_info.theta_omega_given)
1308		{
1309	<	fprintf (stderr, "%s: `--theta_omega' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1310	<	clear_args ();
395	<	exit (EXIT_FAILURE);
1309	>	fprintf (stderr, "%s: `--theta_omega' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1310	>	goto failure;
1311		}
1312	<	args_info->theta_omega_given = 1; staticProps_group_counter += 1;
1313	<
1312	>	if (args_info->theta_omega_given && ! override)
1313	>	continue;
1314	>	local_args_info.theta_omega_given = 1;
1315	>	args_info->theta_omega_given = 1;
1316	>	if (args_info->staticProps_group_counter && override)
1317	>	reset_group_staticProps (args_info);
1318	>	args_info->staticProps_group_counter += 1;
1319		break;
1320		}
401	–
1321		/* g(x, y, z).  */
1322		else if (strcmp (long_options[option_index].name, "gxyz") == 0)
1323		{
1324	<	if (args_info->gxyz_given)
1324	>	if (local_args_info.gxyz_given)
1325		{
1326	<	fprintf (stderr, "%s: `--gxyz' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1327	<	clear_args ();
409	<	exit (EXIT_FAILURE);
1326	>	fprintf (stderr, "%s: `--gxyz' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1327	>	goto failure;
1328		}
1329	<	args_info->gxyz_given = 1; staticProps_group_counter += 1;
1330	<
1329	>	if (args_info->gxyz_given && ! override)
1330	>	continue;
1331	>	local_args_info.gxyz_given = 1;
1332	>	args_info->gxyz_given = 1;
1333	>	if (args_info->staticProps_group_counter && override)
1334	>	reset_group_staticProps (args_info);
1335	>	args_info->staticProps_group_counter += 1;
1336		break;
1337		}
1338	<
1339	<	/* p2 order parameter (--sele1 and --sele2 must be specified).  */
417	<	else if (strcmp (long_options[option_index].name, "p2") == 0)
1338	>	/* rp2 order parameter (--sele1 and --sele2 must be specified).  */
1339	>	else if (strcmp (long_options[option_index].name, "rp2") == 0)
1340		{
1341	<	if (args_info->p2_given)
1341	>	if (local_args_info.rp2_given)
1342		{
1343	<	fprintf (stderr, "%s: `--p2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1344	<	clear_args ();
423	<	exit (EXIT_FAILURE);
1343	>	fprintf (stderr, "%s: `--rp2' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1344	>	goto failure;
1345		}
1346	<	args_info->p2_given = 1; staticProps_group_counter += 1;
1347	<
1346	>	if (args_info->rp2_given && ! override)
1347	>	continue;
1348	>	local_args_info.rp2_given = 1;
1349	>	args_info->rp2_given = 1;
1350	>	if (args_info->staticProps_group_counter && override)
1351	>	reset_group_staticProps (args_info);
1352	>	args_info->staticProps_group_counter += 1;
1353		break;
1354		}
1355	<
1356	<	/* scd order parameter(either --sele1, --sele2, --sele3 are specified or --molname, --begin, --end are specified).  */
431	<	else if (strcmp (long_options[option_index].name, "scd") == 0)
1355	>	/* slab density.  */
1356	>	else if (strcmp (long_options[option_index].name, "slab_density") == 0)
1357		{
1358	<	if (args_info->scd_given)
1358	>	if (local_args_info.slab_density_given)
1359		{
1360	<	fprintf (stderr, "%s: `--scd' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1361	<	clear_args ();
437	<	exit (EXIT_FAILURE);
1360	>	fprintf (stderr, "%s: `--slab_density' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1361	>	goto failure;
1362		}
1363	<	args_info->scd_given = 1; staticProps_group_counter += 1;
1364	<
1363	>	if (args_info->slab_density_given && ! override)
1364	>	continue;
1365	>	local_args_info.slab_density_given = 1;
1366	>	args_info->slab_density_given = 1;
1367	>	if (args_info->staticProps_group_counter && override)
1368	>	reset_group_staticProps (args_info);
1369	>	args_info->staticProps_group_counter += 1;
1370		break;
1371		}
1372	<
1373	<	/* density plot (--sele1 must be specified).  */
445	<	else if (strcmp (long_options[option_index].name, "density") == 0)
1372	>	/* hxy.  */
1373	>	else if (strcmp (long_options[option_index].name, "hxy") == 0)
1374		{
1375	<	if (args_info->density_given)
1375	>	if (local_args_info.hxy_given)
1376		{
1377	<	fprintf (stderr, "%s: `--density' option given more than once\n", CMDLINE_PARSER_PACKAGE);
1378	<	clear_args ();
451	<	exit (EXIT_FAILURE);
1377	>	fprintf (stderr, "%s: `--hxy' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1378	>	goto failure;
1379		}
1380	<	args_info->density_given = 1; staticProps_group_counter += 1;
1381	<
1380	>	if (args_info->hxy_given && ! override)
1381	>	continue;
1382	>	local_args_info.hxy_given = 1;
1383	>	args_info->hxy_given = 1;
1384	>	if (args_info->staticProps_group_counter && override)
1385	>	reset_group_staticProps (args_info);
1386	>	args_info->staticProps_group_counter += 1;
1387		break;
1388		}
1389	+	/* rho of R.  */
1390	+	else if (strcmp (long_options[option_index].name, "rho_r") == 0)
1391	+	{
1392	+	if (local_args_info.rho_r_given)
1393	+	{
1394	+	fprintf (stderr, "%s: `--rho_r' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1395	+	goto failure;
1396	+	}
1397	+	if (args_info->rho_r_given && ! override)
1398	+	continue;
1399	+	local_args_info.rho_r_given = 1;
1400	+	args_info->rho_r_given = 1;
1401	+	if (args_info->staticProps_group_counter && override)
1402	+	reset_group_staticProps (args_info);
1403	+	args_info->staticProps_group_counter += 1;
1404	+	break;
1405	+	}
1406	+	/* hull volume of nanoparticle.  */
1407	+	else if (strcmp (long_options[option_index].name, "hullvol") == 0)
1408	+	{
1409	+	if (local_args_info.hullvol_given)
1410	+	{
1411	+	fprintf (stderr, "%s: `--hullvol' option given more than once%s\n", argv[0], (additional_error ? additional_error : ""));
1412	+	goto failure;
1413	+	}
1414	+	if (args_info->hullvol_given && ! override)
1415	+	continue;
1416	+	local_args_info.hullvol_given = 1;
1417	+	args_info->hullvol_given = 1;
1418	+	if (args_info->staticProps_group_counter && override)
1419	+	reset_group_staticProps (args_info);
1420	+	args_info->staticProps_group_counter += 1;
1421	+	break;
1422	+	}
1423
1424	<
1424	>	break;
1425		case '?':       /* Invalid option.  */
1426		/* `getopt_long' already printed an error message.  */
1427	<	exit (EXIT_FAILURE);
1427	>	goto failure;
1428
1429		default:        /* bug: option not considered.  */
1430	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
1430	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
1431		abort ();
1432		} /* switch */
1433		} /* while */
1434
1435	<	if ( staticProps_group_counter != 1)
1435	>	if (args_info->staticProps_group_counter > 1)
1436		{
1437	<	fprintf (stderr, "%s: %d options of group staticProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, staticProps_group_counter);
1438	<	missing_required_options = 1;
1437	>	fprintf (stderr, "%s: %d options of group staticProps were given. One is required.%s\n", argv[0], args_info->staticProps_group_counter, (additional_error ? additional_error : ""));
1438	>	error = 1;
1439		}
1440
1441
1442	<	if (! args_info->input_given)
1442	>
1443	>	if (check_required)
1444		{
1445	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
479	<	missing_required_options = 1;
1445	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
1446		}
481	–	if ( missing_required_options )
482	–	exit (EXIT_FAILURE);
1447
1448	+	cmdline_parser_release (&local_args_info);
1449	+
1450	+	if ( error )
1451	+	return (EXIT_FAILURE);
1452	+
1453	+	if (optind < argc)
1454	+	{
1455	+	int i = 0 ;
1456	+	int found_prog_name = 0;
1457	+	/* whether program name, i.e., argv[0], is in the remaining args
1458	+	(this may happen with some implementations of getopt,
1459	+	but surely not with the one included by gengetopt) */
1460	+
1461	+	i = optind;
1462	+	while (i < argc)
1463	+	if (argv[i++] == argv[0]) {
1464	+	found_prog_name = 1;
1465	+	break;
1466	+	}
1467	+	i = 0;
1468	+
1469	+	args_info->inputs_num = argc - optind - found_prog_name;
1470	+	args_info->inputs =
1471	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
1472	+	while (optind < argc)
1473	+	if (argv[optind++] != argv[0])
1474	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
1475	+	}
1476	+
1477		return 0;
1478	+
1479	+	failure:
1480	+
1481	+	cmdline_parser_release (&local_args_info);
1482	+	return (EXIT_FAILURE);
1483		}

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