| 44 | 
  | 
  args_info->output_given = 0 ; | 
| 45 | 
  | 
  args_info->step_given = 0 ; | 
| 46 | 
  | 
  args_info->nrbins_given = 0 ; | 
| 47 | 
+ | 
  args_info->nbins_x_given = 0 ; | 
| 48 | 
+ | 
  args_info->nbins_y_given = 0 ; | 
| 49 | 
  | 
  args_info->nanglebins_given = 0 ; | 
| 50 | 
  | 
  args_info->length_given = 0 ; | 
| 51 | 
  | 
  args_info->zoffset_given = 0 ; | 
| 65 | 
  | 
  args_info->scd_given = 0 ; | 
| 66 | 
  | 
  args_info->density_given = 0 ; | 
| 67 | 
  | 
  args_info->slab_density_given = 0 ; | 
| 68 | 
+ | 
  args_info->hxy_given = 0 ; | 
| 69 | 
  | 
  args_info->staticProps_group_counter = 0 ; | 
| 70 | 
  | 
} | 
| 71 | 
  | 
 | 
| 80 | 
  | 
  args_info->step_orig = NULL; | 
| 81 | 
  | 
  args_info->nrbins_arg = 100; | 
| 82 | 
  | 
  args_info->nrbins_orig = NULL; | 
| 83 | 
+ | 
  args_info->nbins_x_arg = 100; | 
| 84 | 
+ | 
  args_info->nbins_x_orig = NULL; | 
| 85 | 
+ | 
  args_info->nbins_y_arg = 100; | 
| 86 | 
+ | 
  args_info->nbins_y_orig = NULL; | 
| 87 | 
  | 
  args_info->nanglebins_arg = 50; | 
| 88 | 
  | 
  args_info->nanglebins_orig = NULL; | 
| 89 | 
  | 
  args_info->length_orig = NULL; | 
| 120 | 
  | 
  printf("%s\n","  -i, --input=filename          input dump file"); | 
| 121 | 
  | 
  printf("%s\n","  -o, --output=filename         output file name"); | 
| 122 | 
  | 
  printf("%s\n","  -n, --step=INT                process every n frame  (default=`1')"); | 
| 123 | 
< | 
  printf("%s\n","  -r, --nrbins=INT              number of bins for distance  (default=`100')"); | 
| 123 | 
> | 
  printf("%s\n","  -x,  --nbins_x=INT              number of bins in x axis  (default=`100')"); | 
| 124 | 
> | 
  printf("%s\n","  -y , --nbins_y=INT              number of bins in y axis  (default=`100')"); | 
| 125 | 
> | 
   printf("%s\n","  -r, --nrbins=INT              number of bins for distance  (default=`100')"); | 
| 126 | 
  | 
  printf("%s\n","  -a, --nanglebins=INT          number of bins for cos(angle)  (default=`50')"); | 
| 127 | 
  | 
  printf("%s\n","  -l, --length=DOUBLE           maximum length (Defaults to 1/2 smallest length \n                                  of first frame)"); | 
| 128 | 
  | 
  printf("%s\n","  -z, --zoffset=DOUBLE          Where to set the zero for the slab_density \n                                  calculation  (default=`0')"); | 
| 143 | 
  | 
  printf("%s\n","      --scd                     scd order parameter(either --sele1, --sele2, \n                                  --sele3 are specified or --molname, --begin, \n                                  --end are specified)"); | 
| 144 | 
  | 
  printf("%s\n","      --density                 density plot (--sele1 must be specified)"); | 
| 145 | 
  | 
  printf("%s\n","      --slab_density            slab density (--sele1 must be specified)"); | 
| 146 | 
+ | 
  printf("%s\n","      --hxy            hxy (--sele1 must be specified)"); | 
| 147 | 
  | 
   | 
| 148 | 
  | 
} | 
| 149 | 
  | 
 | 
| 188 | 
  | 
      free (args_info->nrbins_orig); /* free previous argument */ | 
| 189 | 
  | 
      args_info->nrbins_orig = 0; | 
| 190 | 
  | 
    } | 
| 191 | 
+ | 
    if (args_info->nbins_x_orig) | 
| 192 | 
+ | 
    { | 
| 193 | 
+ | 
      free (args_info->nbins_x_orig); /* free previous argument */ | 
| 194 | 
+ | 
      args_info->nbins_x_orig = 0; | 
| 195 | 
+ | 
    } | 
| 196 | 
+ | 
  if (args_info->nbins_y_orig) | 
| 197 | 
+ | 
    { | 
| 198 | 
+ | 
      free (args_info->nbins_y_orig); /* free previous argument */ | 
| 199 | 
+ | 
      args_info->nbins_y_orig = 0; | 
| 200 | 
+ | 
    } | 
| 201 | 
+ | 
         | 
| 202 | 
  | 
  if (args_info->nanglebins_orig) | 
| 203 | 
  | 
    { | 
| 204 | 
  | 
      free (args_info->nanglebins_orig); /* free previous argument */ | 
| 324 | 
  | 
      fprintf(outfile, "%s=\"%s\"\n", "nrbins", args_info->nrbins_orig); | 
| 325 | 
  | 
    } else { | 
| 326 | 
  | 
      fprintf(outfile, "%s\n", "nrbins"); | 
| 327 | 
+ | 
    } | 
| 328 | 
+ | 
  } | 
| 329 | 
+ | 
  if (args_info->nbins_x_given) { | 
| 330 | 
+ | 
    if (args_info->nbins_x_orig) { | 
| 331 | 
+ | 
      fprintf(outfile, "%s=\"%s\"\n", "nbins_x", args_info->nbins_x_orig); | 
| 332 | 
+ | 
    } else { | 
| 333 | 
+ | 
      fprintf(outfile, "%s\n", "nbins_x"); | 
| 334 | 
  | 
    } | 
| 335 | 
  | 
  } | 
| 336 | 
+ | 
  if (args_info->nbins_y_given) { | 
| 337 | 
+ | 
    if (args_info->nbins_y_orig) { | 
| 338 | 
+ | 
      fprintf(outfile, "%s=\"%s\"\n", "nbins_y", args_info->nbins_y_orig); | 
| 339 | 
+ | 
    } else { | 
| 340 | 
+ | 
      fprintf(outfile, "%s\n", "nbins_y"); | 
| 341 | 
+ | 
    } | 
| 342 | 
+ | 
  } | 
| 343 | 
  | 
  if (args_info->nanglebins_given) { | 
| 344 | 
  | 
    if (args_info->nanglebins_orig) { | 
| 345 | 
  | 
      fprintf(outfile, "%s=\"%s\"\n", "nanglebins", args_info->nanglebins_orig); | 
| 437 | 
  | 
  if (args_info->slab_density_given) { | 
| 438 | 
  | 
    fprintf(outfile, "%s\n", "slab_density"); | 
| 439 | 
  | 
  } | 
| 440 | 
< | 
   | 
| 440 | 
> | 
  if (args_info->hxy_given) { | 
| 441 | 
> | 
    fprintf(outfile, "%s\n", "hxy"); | 
| 442 | 
> | 
  } | 
| 443 | 
  | 
  fclose (outfile); | 
| 444 | 
  | 
 | 
| 445 | 
  | 
  i = EXIT_SUCCESS; | 
| 487 | 
  | 
  args_info->scd_given = 0 ; | 
| 488 | 
  | 
  args_info->density_given = 0 ; | 
| 489 | 
  | 
  args_info->slab_density_given = 0 ; | 
| 490 | 
+ | 
  args_info->hxy_given= 0 ; | 
| 491 | 
  | 
 | 
| 492 | 
  | 
  args_info->staticProps_group_counter = 0; | 
| 493 | 
  | 
} | 
| 600 | 
  | 
        { "scd",        0, NULL, 0 }, | 
| 601 | 
  | 
        { "density",    0, NULL, 0 }, | 
| 602 | 
  | 
        { "slab_density",       0, NULL, 0 }, | 
| 603 | 
+ | 
        { "hxy",        0, NULL, 0 }, | 
| 604 | 
  | 
        { NULL, 0, NULL, 0 } | 
| 605 | 
  | 
      }; | 
| 606 | 
  | 
 | 
| 695 | 
  | 
          if (args_info->nrbins_orig) | 
| 696 | 
  | 
            free (args_info->nrbins_orig); /* free previous string */ | 
| 697 | 
  | 
          args_info->nrbins_orig = gengetopt_strdup (optarg); | 
| 698 | 
+ | 
          break; | 
| 699 | 
+ | 
 | 
| 700 | 
+ | 
        case 'x':       /* number of bins in x axis.  */ | 
| 701 | 
+ | 
          if (local_args_info.nbins_x_given) | 
| 702 | 
+ | 
            { | 
| 703 | 
+ | 
              fprintf (stderr, "%s: `--nbins_x' (`-r') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); | 
| 704 | 
+ | 
              goto failure; | 
| 705 | 
+ | 
            } | 
| 706 | 
+ | 
          if (args_info->nbins_x_given && ! override) | 
| 707 | 
+ | 
            continue; | 
| 708 | 
+ | 
          local_args_info.nbins_x_given = 1; | 
| 709 | 
+ | 
          args_info->nbins_x_given = 1; | 
| 710 | 
+ | 
          args_info->nbins_x_arg = strtol (optarg, &stop_char, 0); | 
| 711 | 
+ | 
          if (!(stop_char && *stop_char == '\0')) { | 
| 712 | 
+ | 
            fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg); | 
| 713 | 
+ | 
            goto failure; | 
| 714 | 
+ | 
          } | 
| 715 | 
+ | 
          if (args_info->nbins_x_orig) | 
| 716 | 
+ | 
            free (args_info->nbins_x_orig); /* free previous string */ | 
| 717 | 
+ | 
          args_info->nbins_x_orig = gengetopt_strdup (optarg); | 
| 718 | 
  | 
          break; | 
| 719 | 
  | 
 | 
| 720 | 
+ | 
        case 'y':       /* number of bins in y axis.  */ | 
| 721 | 
+ | 
          if (local_args_info.nbins_y_given) | 
| 722 | 
+ | 
            { | 
| 723 | 
+ | 
              fprintf (stderr, "%s: `--nbins_y' (`-r') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); | 
| 724 | 
+ | 
              goto failure; | 
| 725 | 
+ | 
            } | 
| 726 | 
+ | 
          if (args_info->nbins_y_given && ! override) | 
| 727 | 
+ | 
            continue; | 
| 728 | 
+ | 
          local_args_info.nbins_y_given = 1; | 
| 729 | 
+ | 
          args_info->nbins_y_given = 1; | 
| 730 | 
+ | 
          args_info->nbins_y_arg = strtol (optarg, &stop_char, 0); | 
| 731 | 
+ | 
          if (!(stop_char && *stop_char == '\0')) { | 
| 732 | 
+ | 
            fprintf(stderr, "%s: invalid numeric value: %s\n", argv[0], optarg); | 
| 733 | 
+ | 
            goto failure; | 
| 734 | 
+ | 
          } | 
| 735 | 
+ | 
          if (args_info->nbins_y_orig) | 
| 736 | 
+ | 
            free (args_info->nbins_y_orig); /* free previous string */ | 
| 737 | 
+ | 
          args_info->nbins_y_orig = gengetopt_strdup (optarg); | 
| 738 | 
+ | 
          break; | 
| 739 | 
+ | 
 | 
| 740 | 
  | 
        case 'a':       /* number of bins for cos(angle).  */ | 
| 741 | 
  | 
          if (local_args_info.nanglebins_given) | 
| 742 | 
  | 
            { | 
| 1084 | 
  | 
              continue; | 
| 1085 | 
  | 
            local_args_info.slab_density_given = 1; | 
| 1086 | 
  | 
            args_info->slab_density_given = 1; | 
| 1087 | 
+ | 
            if (args_info->staticProps_group_counter && override) | 
| 1088 | 
+ | 
              reset_group_staticProps (args_info); | 
| 1089 | 
+ | 
            args_info->staticProps_group_counter += 1; | 
| 1090 | 
+ | 
            break; | 
| 1091 | 
+ | 
          } | 
| 1092 | 
+ | 
          /* hxy (--sele1 must be specified).  */ | 
| 1093 | 
+ | 
          else if (strcmp (long_options[option_index].name, "hxy") == 0) | 
| 1094 | 
+ | 
          { | 
| 1095 | 
+ | 
            if (local_args_info.hxy_given) | 
| 1096 | 
+ | 
              { | 
| 1097 | 
+ | 
                fprintf (stderr, "%s: `--hxy' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); | 
| 1098 | 
+ | 
                goto failure; | 
| 1099 | 
+ | 
              } | 
| 1100 | 
+ | 
            if (args_info->hxy_given && ! override) | 
| 1101 | 
+ | 
              continue; | 
| 1102 | 
+ | 
            local_args_info.hxy_given = 1; | 
| 1103 | 
+ | 
            args_info->hxy_given = 1; | 
| 1104 | 
  | 
            if (args_info->staticProps_group_counter && override) | 
| 1105 | 
  | 
              reset_group_staticProps (args_info); | 
| 1106 | 
  | 
            args_info->staticProps_group_counter += 1; |