56 |
|
" --bo bond order parameter (--rcut must be specified)", |
57 |
|
" --bor bond order parameter as a function of radius \n (--rcut must be specified)", |
58 |
|
" --bad N(theta) bond angle density within (--rcut must \n be specified)", |
59 |
+ |
" --count count of molecules matching selection criteria \n (and associated statistics)", |
60 |
|
" -g, --gofr g(r)", |
61 |
|
" --gofz g(z)", |
62 |
|
" --r_theta g(r, cos(theta))", |
128 |
|
args_info->bo_given = 0 ; |
129 |
|
args_info->bor_given = 0 ; |
130 |
|
args_info->bad_given = 0 ; |
131 |
+ |
args_info->count_given = 0 ; |
132 |
|
args_info->gofr_given = 0 ; |
133 |
|
args_info->gofz_given = 0 ; |
134 |
|
args_info->r_theta_given = 0 ; |
224 |
|
args_info->bo_help = gengetopt_args_info_help[25] ; |
225 |
|
args_info->bor_help = gengetopt_args_info_help[26] ; |
226 |
|
args_info->bad_help = gengetopt_args_info_help[27] ; |
227 |
< |
args_info->gofr_help = gengetopt_args_info_help[28] ; |
228 |
< |
args_info->gofz_help = gengetopt_args_info_help[29] ; |
229 |
< |
args_info->r_theta_help = gengetopt_args_info_help[30] ; |
230 |
< |
args_info->r_omega_help = gengetopt_args_info_help[31] ; |
231 |
< |
args_info->r_z_help = gengetopt_args_info_help[32] ; |
232 |
< |
args_info->theta_omega_help = gengetopt_args_info_help[33] ; |
233 |
< |
args_info->gxyz_help = gengetopt_args_info_help[34] ; |
234 |
< |
args_info->twodgofr_help = gengetopt_args_info_help[35] ; |
235 |
< |
args_info->p2_help = gengetopt_args_info_help[36] ; |
236 |
< |
args_info->rp2_help = gengetopt_args_info_help[37] ; |
237 |
< |
args_info->scd_help = gengetopt_args_info_help[38] ; |
238 |
< |
args_info->density_help = gengetopt_args_info_help[39] ; |
239 |
< |
args_info->slab_density_help = gengetopt_args_info_help[40] ; |
240 |
< |
args_info->p_angle_help = gengetopt_args_info_help[41] ; |
241 |
< |
args_info->hxy_help = gengetopt_args_info_help[42] ; |
242 |
< |
args_info->rho_r_help = gengetopt_args_info_help[43] ; |
243 |
< |
args_info->hullvol_help = gengetopt_args_info_help[44] ; |
227 |
> |
args_info->count_help = gengetopt_args_info_help[28] ; |
228 |
> |
args_info->gofr_help = gengetopt_args_info_help[29] ; |
229 |
> |
args_info->gofz_help = gengetopt_args_info_help[30] ; |
230 |
> |
args_info->r_theta_help = gengetopt_args_info_help[31] ; |
231 |
> |
args_info->r_omega_help = gengetopt_args_info_help[32] ; |
232 |
> |
args_info->r_z_help = gengetopt_args_info_help[33] ; |
233 |
> |
args_info->theta_omega_help = gengetopt_args_info_help[34] ; |
234 |
> |
args_info->gxyz_help = gengetopt_args_info_help[35] ; |
235 |
> |
args_info->twodgofr_help = gengetopt_args_info_help[36] ; |
236 |
> |
args_info->p2_help = gengetopt_args_info_help[37] ; |
237 |
> |
args_info->rp2_help = gengetopt_args_info_help[38] ; |
238 |
> |
args_info->scd_help = gengetopt_args_info_help[39] ; |
239 |
> |
args_info->density_help = gengetopt_args_info_help[40] ; |
240 |
> |
args_info->slab_density_help = gengetopt_args_info_help[41] ; |
241 |
> |
args_info->p_angle_help = gengetopt_args_info_help[42] ; |
242 |
> |
args_info->hxy_help = gengetopt_args_info_help[43] ; |
243 |
> |
args_info->rho_r_help = gengetopt_args_info_help[44] ; |
244 |
> |
args_info->hullvol_help = gengetopt_args_info_help[45] ; |
245 |
|
|
246 |
|
} |
247 |
|
|
441 |
|
write_into_file(outfile, "bor", 0, 0 ); |
442 |
|
if (args_info->bad_given) |
443 |
|
write_into_file(outfile, "bad", 0, 0 ); |
444 |
+ |
if (args_info->count_given) |
445 |
+ |
write_into_file(outfile, "count", 0, 0 ); |
446 |
|
if (args_info->gofr_given) |
447 |
|
write_into_file(outfile, "gofr", 0, 0 ); |
448 |
|
if (args_info->gofz_given) |
533 |
|
args_info->bo_given = 0 ; |
534 |
|
args_info->bor_given = 0 ; |
535 |
|
args_info->bad_given = 0 ; |
536 |
+ |
args_info->count_given = 0 ; |
537 |
|
args_info->gofr_given = 0 ; |
538 |
|
args_info->gofz_given = 0 ; |
539 |
|
args_info->r_theta_given = 0 ; |
818 |
|
{ "bo", 0, NULL, 0 }, |
819 |
|
{ "bor", 0, NULL, 0 }, |
820 |
|
{ "bad", 0, NULL, 0 }, |
821 |
+ |
{ "count", 0, NULL, 0 }, |
822 |
|
{ "gofr", 0, NULL, 'g' }, |
823 |
|
{ "gofz", 0, NULL, 0 }, |
824 |
|
{ "r_theta", 0, NULL, 0 }, |
1254 |
|
&(local_args_info.bad_given), optarg, 0, 0, ARG_NO, |
1255 |
|
check_ambiguity, override, 0, 0, |
1256 |
|
"bad", '-', |
1257 |
+ |
additional_error)) |
1258 |
+ |
goto failure; |
1259 |
+ |
|
1260 |
+ |
} |
1261 |
+ |
/* count of molecules matching selection criteria (and associated statistics). */ |
1262 |
+ |
else if (strcmp (long_options[option_index].name, "count") == 0) |
1263 |
+ |
{ |
1264 |
+ |
|
1265 |
+ |
if (args_info->staticProps_group_counter && override) |
1266 |
+ |
reset_group_staticProps (args_info); |
1267 |
+ |
args_info->staticProps_group_counter += 1; |
1268 |
+ |
|
1269 |
+ |
if (update_arg( 0 , |
1270 |
+ |
0 , &(args_info->count_given), |
1271 |
+ |
&(local_args_info.count_given), optarg, 0, 0, ARG_NO, |
1272 |
+ |
check_ambiguity, override, 0, 0, |
1273 |
+ |
"count", '-', |
1274 |
|
additional_error)) |
1275 |
|
goto failure; |
1276 |
|
|