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root/OpenMD/trunk/src/applications/staticProps/StaticProps.cpp
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Comparing trunk/src/applications/staticProps/StaticProps.cpp (file contents):
Revision 980 by xsun, Thu Jun 1 18:06:33 2006 UTC vs.
Revision 2031 by jmichalk, Fri Oct 31 18:40:40 2014 UTC

# Line 6 | Line 6
6   * redistribute this software in source and binary code form, provided
7   * that the following conditions are met:
8   *
9 < * 1. Acknowledgement of the program authors must be made in any
10 < *    publication of scientific results based in part on use of the
11 < *    program.  An acceptable form of acknowledgement is citation of
12 < *    the article in which the program was described (Matthew
13 < *    A. Meineke, Charles F. Vardeman II, Teng Lin, Christopher
14 < *    J. Fennell and J. Daniel Gezelter, "OOPSE: An Object-Oriented
15 < *    Parallel Simulation Engine for Molecular Dynamics,"
16 < *    J. Comput. Chem. 26, pp. 252-271 (2005))
17 < *
18 < * 2. Redistributions of source code must retain the above copyright
9 > * 1. Redistributions of source code must retain the above copyright
10   *    notice, this list of conditions and the following disclaimer.
11   *
12 < * 3. Redistributions in binary form must reproduce the above copyright
12 > * 2. Redistributions in binary form must reproduce the above copyright
13   *    notice, this list of conditions and the following disclaimer in the
14   *    documentation and/or other materials provided with the
15   *    distribution.
# Line 37 | Line 28
28   * arising out of the use of or inability to use software, even if the
29   * University of Notre Dame has been advised of the possibility of
30   * such damages.
31 + *
32 + * SUPPORT OPEN SCIENCE!  If you use OpenMD or its source code in your
33 + * research, please cite the appropriate papers when you publish your
34 + * work.  Good starting points are:
35 + *                                                                      
36 + * [1]  Meineke, et al., J. Comp. Chem. 26, 252-271 (2005).            
37 + * [2]  Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006).          
38 + * [3]  Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008).          
39 + * [4]  Kuang & Gezelter,  J. Chem. Phys. 133, 164101 (2010).
40 + * [5]  Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011).
41   */
42  
43   #include <iostream>
44   #include <fstream>
45   #include <string>
46  
46 #include "brains/Register.hpp"
47   #include "brains/SimCreator.hpp"
48   #include "brains/SimInfo.hpp"
49   #include "io/DumpReader.hpp"
# Line 52 | Line 52
52   #include "applications/staticProps/StaticPropsCmd.h"
53   #include "applications/staticProps/StaticAnalyser.hpp"
54   #include "applications/staticProps/GofR.hpp"
55 + #include "applications/staticProps/GofZ.hpp"
56 + #include "applications/staticProps/GofRZ.hpp"
57   #include "applications/staticProps/GofRAngle.hpp"
58   #include "applications/staticProps/GofAngle2.hpp"
59   #include "applications/staticProps/GofXyz.hpp"
60 + #include "applications/staticProps/TwoDGofR.hpp"
61   #include "applications/staticProps/P2OrderParameter.hpp"
62 + #include "applications/staticProps/BondOrderParameter.hpp"
63 + #include "applications/staticProps/BOPofR.hpp"
64   #include "applications/staticProps/RippleOP.hpp"
65   #include "applications/staticProps/SCDOrderParameter.hpp"
66   #include "applications/staticProps/DensityPlot.hpp"
67 + #include "applications/staticProps/ObjectCount.hpp"
68   #include "applications/staticProps/RhoZ.hpp"
69 + #include "applications/staticProps/pAngle.hpp"
70 + #include "applications/staticProps/BondAngleDistribution.hpp"
71 + #include "applications/staticProps/NanoVolume.hpp"
72 + #include "applications/staticProps/NanoLength.hpp"
73   #if defined(HAVE_FFTW_H) || defined(HAVE_DFFTW_H) || defined(HAVE_FFTW3_H)
74   #include "applications/staticProps/Hxy.hpp"
75   #endif
76 + #include "applications/staticProps/RhoR.hpp"
77 + #include "applications/staticProps/AngleR.hpp"
78 + #include "applications/staticProps/TetrahedralityParam.hpp"
79 + #include "applications/staticProps/TetrahedralityParamZ.hpp"
80 + #include "applications/staticProps/TetrahedralityParamXYZ.hpp"
81 + #include "applications/staticProps/RNEMDStats.hpp"
82 + #include "applications/staticProps/NitrileFrequencyMap.hpp"
83 + #include "applications/staticProps/MultipoleSum.hpp"
84 + #include "applications/staticProps/SurfaceDiffusion.hpp"
85  
86 < using namespace oopse;
86 > using namespace OpenMD;
87  
88   int main(int argc, char* argv[]){
89    
90 <  //register force fields
72 <  registerForceFields();
73 <
90 >  
91    gengetopt_args_info args_info;
92 <
92 >  
93    //parse the command line option
94    if (cmdline_parser (argc, argv, &args_info) != 0) {
95      exit(1) ;
96    }
97 <
98 <
82 <  //get the dumpfile name and meta-data file name
97 >  
98 >  //get the dumpfile name
99    std::string dumpFileName = args_info.input_arg;
84
85  std::string mdFileName = dumpFileName.substr(0, dumpFileName.rfind(".")) + ".md";
86
87    
100    std::string sele1;
101    std::string sele2;
102 <
102 >  std::string sele3;
103 >  
104 >  // check the first selection argument, or set it to the environment
105 >  // variable, or failing that, set it to "select all"
106 >  
107    if (args_info.sele1_given) {
108      sele1 = args_info.sele1_arg;
109 <  }else {
110 <    char*  sele1Env= getenv("OOPSE_SELE1");
109 >  } else {
110 >    char*  sele1Env= getenv("SELECTION1");
111      if (sele1Env) {
112        sele1 = sele1Env;
113 <    }else if (!args_info.scd_given) {
114 <      sprintf( painCave.errMsg,
99 <               "neither --sele1 option nor $OOPSE_SELE1 is set");
100 <      painCave.severity = OOPSE_ERROR;
101 <      painCave.isFatal = 1;
102 <      simError();
113 >    } else {
114 >      sele1 = "select all";
115      }
116    }
117 <    
117 >  
118 >  // check the second selection argument, or set it to the environment
119 >  // variable, or failing that, set it to the first selection
120 >  
121    if (args_info.sele2_given) {
122      sele2 = args_info.sele2_arg;
123 <  }else {
124 <    char* sele2Env = getenv("OOPSE_SELE2");
123 >  } else {
124 >    char* sele2Env = getenv("SELECTION2");
125      if (sele2Env) {
126        sele2 = sele2Env;            
127 <    } else if (args_info.density_given) {
128 <      sele2 = "select all";
129 <    } else if(!args_info.scd_given && !args_info.density_given && !args_info.slab_density_given)  {
130 <      sprintf( painCave.errMsg,
116 <               "neither --sele2 option nor $OOPSE_SELE2 is set");
117 <      painCave.severity = OOPSE_ERROR;
118 <      painCave.isFatal = 1;
119 <      simError();        
127 >    } else {
128 >      //If sele2 is not specified, then the default behavior
129 >      //should be what is already intended for sele1
130 >      sele2 = sele1;
131      }
132    }
133  
134 +  // check the third selection argument, which is only set if
135 +  // requested by the user
136 +
137 +  if (args_info.sele3_given) sele3 = args_info.sele3_arg;
138 +
139    bool batchMode;
140    if (args_info.scd_given){
141 <    if (args_info.sele1_given && args_info.sele2_given && args_info.sele3_given) {
142 <        batchMode = false;
143 <    } else if (args_info.molname_given && args_info.begin_given && args_info.end_given) {
144 <        if (args_info.begin_arg < 0 || args_info.end_arg < 0 || args_info.begin_arg > args_info.end_arg-2) {
145 <            sprintf( painCave.errMsg,
146 <                     "below conditions are not satisfied:\n"
147 <                     "0 <= begin && 0<= end && begin <= end-2\n");
132 <            painCave.severity = OOPSE_ERROR;
133 <            painCave.isFatal = 1;
134 <            simError();                    
135 <        }
136 <        batchMode = true;        
137 <    } else{
141 >    if (args_info.sele1_given &&
142 >        args_info.sele2_given && args_info.sele3_given) {
143 >      batchMode = false;
144 >    } else if (args_info.molname_given &&
145 >               args_info.begin_given && args_info.end_given) {
146 >      if (args_info.begin_arg < 0 ||
147 >          args_info.end_arg < 0 || args_info.begin_arg > args_info.end_arg-2) {
148          sprintf( painCave.errMsg,
149 <                 "either --sele1, --sele2, --sele3 are specified,"
150 <                 " or --molname, --begin, --end are specified\n");
151 <        painCave.severity = OOPSE_ERROR;
149 >                 "below conditions are not satisfied:\n"
150 >                 "0 <= begin && 0<= end && begin <= end-2\n");
151 >        painCave.severity = OPENMD_ERROR;
152          painCave.isFatal = 1;
153 <        simError();        
154 <    
153 >        simError();                    
154 >      }
155 >      batchMode = true;        
156 >    } else{
157 >      sprintf( painCave.errMsg,
158 >               "either --sele1, --sele2, --sele3 are specified,"
159 >               " or --molname, --begin, --end are specified\n");
160 >      painCave.severity = OPENMD_ERROR;
161 >      painCave.isFatal = 1;
162 >      simError();
163      }
164    }
165 <
165 >  
166    //parse md file and set up the system
167    SimCreator creator;
168 <  SimInfo* info = creator.createSim(mdFileName);
168 >  SimInfo* info = creator.createSim(dumpFileName);
169  
170    RealType maxLen;
171 +  RealType zmaxLen;
172    if (args_info.length_given) {
173      maxLen = args_info.length_arg;
174 +    if (args_info.zlength_given){
175 +      zmaxLen = args_info.zlength_arg;
176 +    }
177    } else {
178      Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat();
179 <    maxLen = std::min(std::min(hmat(0, 0), hmat(1, 1)), hmat(2, 2)) /2.0;        
179 >    maxLen = std::min(std::min(hmat(0, 0), hmat(1, 1)), hmat(2, 2)) /2.0;
180 >    zmaxLen = hmat(2,2);    
181    }    
182 <
182 >  
183    StaticAnalyser* analyser;
184    if (args_info.gofr_given){
185 <    analyser= new GofR(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg);        
185 >    analyser= new GofR(info, dumpFileName, sele1, sele2, maxLen,
186 >                       args_info.nbins_arg);        
187 >  } else if (args_info.gofz_given) {
188 >    analyser= new GofZ(info, dumpFileName, sele1, sele2, maxLen,
189 >                       args_info.nbins_arg);
190 >  } else if (args_info.r_z_given) {
191 >    analyser  = new GofRZ(info, dumpFileName, sele1, sele2, maxLen, zmaxLen,
192 >                          args_info.nbins_arg, args_info.nbins_z_arg);
193    } else if (args_info.r_theta_given) {
194 <    analyser  = new GofRTheta(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg, args_info.nanglebins_arg);
194 >    if (args_info.sele3_given)
195 >      analyser  = new GofRTheta(info, dumpFileName, sele1, sele2, sele3, maxLen,
196 >                                args_info.nbins_arg, args_info.nanglebins_arg);
197 >    else
198 >      analyser  = new GofRTheta(info, dumpFileName, sele1, sele2, maxLen,
199 >                                args_info.nbins_arg, args_info.nanglebins_arg);
200    } else if (args_info.r_omega_given) {
201 <    analyser  = new GofROmega(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg, args_info.nanglebins_arg);
201 >    if (args_info.sele3_given)
202 >      analyser  = new GofROmega(info, dumpFileName, sele1, sele2, sele3, maxLen,
203 >                                args_info.nbins_arg, args_info.nanglebins_arg);
204 >    else
205 >      analyser  = new GofROmega(info, dumpFileName, sele1, sele2, maxLen,
206 >                                args_info.nbins_arg, args_info.nanglebins_arg);
207 >
208    } else if (args_info.theta_omega_given) {
209 <    analyser  = new GofAngle2(info, dumpFileName, sele1, sele2, args_info.nanglebins_arg);
209 >    if (args_info.sele3_given)
210 >      analyser  = new GofAngle2(info, dumpFileName, sele1, sele2, sele3,
211 >                                args_info.nanglebins_arg);
212 >    else
213 >      analyser  = new GofAngle2(info, dumpFileName, sele1, sele2,
214 >                                args_info.nanglebins_arg);
215    } else if (args_info.gxyz_given) {
216      if (args_info.refsele_given) {
217 <      analyser= new GofXyz(info, dumpFileName, sele1, sele2,args_info.refsele_arg, maxLen, args_info.nrbins_arg);        
217 >      analyser= new GofXyz(info, dumpFileName, sele1, sele2,
218 >                           args_info.refsele_arg, maxLen, args_info.nbins_arg);
219      } else {
220        sprintf( painCave.errMsg,
221 <               "--refsele must set when --gxyz is used");
222 <      painCave.severity = OOPSE_ERROR;
221 >               "--refsele must set when --gxyz is used");
222 >      painCave.severity = OPENMD_ERROR;
223        painCave.isFatal = 1;
224        simError();  
225      }
226 <  } else if (args_info.p2_given) {
227 <      analyser  = new P2OrderParameter(info, dumpFileName, sele1, sele2);
228 <  }    else if (args_info.rp2_given){
229 <      analyser = new RippleOP(info, dumpFileName, sele1, sele2);
230 < }else if (args_info.scd_given) {
231 <      if (batchMode) {
232 <          analyser  = new SCDOrderParameter(info, dumpFileName, args_info.molname_arg,
233 <            args_info.begin_arg, args_info.end_arg);
234 <      } else{
235 <          std::string sele3 = args_info.sele3_arg;
236 <          analyser  = new SCDOrderParameter(info, dumpFileName, sele1, sele2, sele3);
237 <      }
238 <  }else if (args_info.density_given) {
239 <      analyser= new DensityPlot(info, dumpFileName, sele1, sele2, maxLen, args_info.nrbins_arg);  
226 >  } else if (args_info.twodgofr_given){
227 >    if (args_info.dz_given) {
228 >      analyser= new TwoDGofR(info, dumpFileName, sele1, sele2, maxLen,
229 >                             args_info.dz_arg, args_info.nbins_arg);        
230 >    } else {
231 >      sprintf( painCave.errMsg,
232 >               "A slab width (dz) must be specified when calculating TwoDGofR");
233 >      painCave.severity = OPENMD_ERROR;
234 >      painCave.isFatal = 1;
235 >      simError();
236 >    }    
237 >  } else if (args_info.p2_given) {
238 >    if (args_info.sele1_given) {    
239 >      if (args_info.sele2_given)
240 >        analyser  = new P2OrderParameter(info, dumpFileName, sele1, sele2);
241 >      else
242 >        if (args_info.seleoffset_given)
243 >          analyser  = new P2OrderParameter(info, dumpFileName, sele1,
244 >                                           args_info.seleoffset_arg);
245 >        else
246 >          analyser  = new P2OrderParameter(info, dumpFileName, sele1);
247 >    } else {
248 >      sprintf( painCave.errMsg,
249 >               "At least one selection script (--sele1) must be specified when calculating P2 order parameters");
250 >      painCave.severity = OPENMD_ERROR;
251 >      painCave.isFatal = 1;
252 >      simError();
253 >    }
254 >  } else if (args_info.rp2_given){
255 >    analyser = new RippleOP(info, dumpFileName, sele1, sele2);
256 >  } else if (args_info.bo_given){
257 >    if (args_info.rcut_given) {
258 >      analyser = new BondOrderParameter(info, dumpFileName, sele1,
259 >                                        args_info.rcut_arg,
260 >                                        args_info.nbins_arg);
261 >    } else {
262 >      sprintf( painCave.errMsg,
263 >               "A cutoff radius (rcut) must be specified when calculating Bond Order Parameters");
264 >      painCave.severity = OPENMD_ERROR;
265 >      painCave.isFatal = 1;
266 >      simError();
267 >    }
268 >  } else if (args_info.multipole_given){
269 >    analyser = new MultipoleSum(info, dumpFileName, sele1,
270 >                                maxLen, args_info.nbins_arg);
271 >  } else if (args_info.tet_param_given) {
272 >    if (args_info.rcut_given) {  
273 >      analyser = new TetrahedralityParam(info, dumpFileName, sele1,
274 >                                         args_info.rcut_arg,
275 >                                         args_info.nbins_arg);
276 >    } else {
277 >      sprintf( painCave.errMsg,
278 >               "A cutoff radius (rcut) must be specified when calculating Tetrahedrality Parameters");
279 >      painCave.severity = OPENMD_ERROR;
280 >      painCave.isFatal = 1;
281 >      simError();
282 >    }
283 >  } else if (args_info.tet_param_z_given) {
284 >    if (args_info.rcut_given) {  
285 >      analyser = new TetrahedralityParamZ(info, dumpFileName, sele1, sele2,
286 >                                          args_info.rcut_arg,
287 >                                          args_info.nbins_arg);
288 >    } else {
289 >      sprintf( painCave.errMsg,
290 >               "A cutoff radius (rcut) must be specified when calculating Tetrahedrality Parameters");
291 >      painCave.severity = OPENMD_ERROR;
292 >      painCave.isFatal = 1;
293 >      simError();
294 >    }
295 >  } else if (args_info.tet_param_xyz_given) {
296 >    if (!args_info.rcut_given) {
297 >      sprintf( painCave.errMsg,
298 >               "A cutoff radius (rcut) must be specified when calculating"
299 >               " Tetrahedrality Parameters");
300 >      painCave.severity = OPENMD_ERROR;
301 >      painCave.isFatal = 1;
302 >      simError();
303 >    }
304 >    if (!args_info.voxelSize_given) {
305 >      sprintf( painCave.errMsg,
306 >               "A voxel size must be specified when calculating"
307 >               " volume-resolved Tetrahedrality Parameters");
308 >      painCave.severity = OPENMD_ERROR;
309 >      painCave.isFatal = 1;
310 >      simError();
311 >    }
312 >    if (!args_info.gaussWidth_given) {
313 >      sprintf( painCave.errMsg,
314 >               "A gaussian width must be specified when calculating"
315 >               " volume-resolved Tetrahedrality Parameters");
316 >      painCave.severity = OPENMD_ERROR;
317 >      painCave.isFatal = 1;
318 >      simError();
319 >    }
320 >    analyser = new TetrahedralityParamXYZ(info, dumpFileName, sele1, sele2,
321 >                                          args_info.rcut_arg,
322 >                                          args_info.voxelSize_arg,
323 >                                          args_info.gaussWidth_arg);
324 >  } else if (args_info.ior_given){
325 >    if (args_info.rcut_given) {
326 >      analyser = new IcosahedralOfR(info, dumpFileName, sele1,
327 >                                    args_info.rcut_arg,
328 >                                    args_info.nbins_arg, maxLen);
329 >    } else {
330 >      sprintf( painCave.errMsg,
331 >               "A cutoff radius (rcut) must be specified when calculating Bond Order Parameters");
332 >      painCave.severity = OPENMD_ERROR;
333 >      painCave.isFatal = 1;
334 >      simError();
335 >    }
336 >  } else if (args_info.for_given){
337 >    if (args_info.rcut_given) {
338 >      analyser = new FCCOfR(info, dumpFileName, sele1, args_info.rcut_arg,
339 >                            args_info.nbins_arg, maxLen);
340 >    } else {
341 >      sprintf( painCave.errMsg,
342 >               "A cutoff radius (rcut) must be specified when calculating Bond Order Parameters");
343 >      painCave.severity = OPENMD_ERROR;
344 >      painCave.isFatal = 1;
345 >      simError();
346 >    }
347 >  } else if (args_info.bad_given){
348 >    if (args_info.rcut_given) {
349 >      analyser = new BondAngleDistribution(info, dumpFileName, sele1,
350 >                                           args_info.rcut_arg,
351 >                                           args_info.nbins_arg);
352 >    } else {
353 >      sprintf( painCave.errMsg,
354 >               "A cutoff radius (rcut) must be specified when calculating Bond Angle Distributions");
355 >      painCave.severity = OPENMD_ERROR;
356 >      painCave.isFatal = 1;
357 >      simError();
358 >    }
359 >  } else if (args_info.scd_given) {
360 >    if (batchMode) {
361 >      analyser  = new SCDOrderParameter(info, dumpFileName,
362 >                                        args_info.molname_arg,
363 >                                        args_info.begin_arg, args_info.end_arg);
364 >    } else{
365 >      analyser  = new SCDOrderParameter(info, dumpFileName,
366 >                                        sele1, sele2, sele3);
367 >    }
368 >  }else if (args_info.density_given) {
369 >    analyser= new DensityPlot(info, dumpFileName, sele1, sele2, maxLen,
370 >                              args_info.nbins_arg);  
371 >  } else if (args_info.count_given) {
372 >    analyser = new ObjectCount(info, dumpFileName, sele1 );
373    } else if (args_info.slab_density_given) {
374 <      Mat3x3d hmat = info->getSnapshotManager()->getCurrentSnapshot()->getHmat();
375 <      analyser = new RhoZ(info, dumpFileName, sele1, hmat(2, 2), args_info.nrbins_arg);
374 >    analyser = new RhoZ(info, dumpFileName, sele1, args_info.nbins_arg);
375 >  } else if (args_info.rnemdz_given) {
376 >    analyser = new RNEMDZ(info, dumpFileName, sele1, args_info.nbins_arg);
377 >  } else if (args_info.rnemdr_given) {
378 >    analyser = new RNEMDR(info, dumpFileName, sele1, args_info.nbins_arg);
379 >  } else if (args_info.rnemdrt_given) {
380 >    analyser = new RNEMDRTheta(info, dumpFileName, sele1,
381 >                               args_info.nbins_arg, args_info.nanglebins_arg);
382 >  } else if (args_info.nitrile_given) {
383 >    analyser = new NitrileFrequencyMap(info, dumpFileName, sele1,
384 >                                       args_info.nbins_arg);
385 >  } else if (args_info.p_angle_given) {
386 >    if (args_info.sele1_given) {    
387 >      if (args_info.sele2_given)
388 >        analyser  = new pAngle(info, dumpFileName, sele1, sele2,
389 >                               args_info.nbins_arg);
390 >      else
391 >        if (args_info.seleoffset_given) {
392 >          if (args_info.seleoffset2_given) {
393 >            analyser  = new pAngle(info, dumpFileName, sele1,
394 >                                   args_info.seleoffset_arg,
395 >                                   args_info.seleoffset2_arg,
396 >                                   args_info.nbins_arg);
397 >          } else {
398 >            analyser  = new pAngle(info, dumpFileName, sele1,
399 >                                   args_info.seleoffset_arg,
400 >                                   args_info.nbins_arg);
401 >          }
402 >        } else
403 >          analyser  = new pAngle(info, dumpFileName, sele1,
404 >                                 args_info.nbins_arg);
405 >    } else {
406 >      sprintf( painCave.errMsg,
407 >               "At least one selection script (--sele1) must be specified when "
408 >               "calculating P(angle) distributions");
409 >      painCave.severity = OPENMD_ERROR;
410 >      painCave.isFatal = 1;
411 >      simError();
412 >    }
413   #if defined(HAVE_FFTW_H) || defined(HAVE_DFFTW_H) || defined(HAVE_FFTW3_H)
414    }else if (args_info.hxy_given) {
415 <    analyser = new Hxy(info, dumpFileName, sele1, args_info.nbins_x_arg, args_info.nbins_y_arg, args_info.nrbins_arg);
415 >    analyser = new Hxy(info, dumpFileName, sele1, args_info.nbins_x_arg,
416 >                       args_info.nbins_y_arg, args_info.nbins_arg);
417   #endif
418 +  }else if (args_info.surfDiffusion_given){
419 +    analyser = new SurfaceDiffusion(info, dumpFileName, sele1, maxLen);
420 +  }else if (args_info.rho_r_given) {
421 +    if (args_info.radius_given){
422 +      analyser = new RhoR(info, dumpFileName, sele1, maxLen,args_info.nbins_arg,args_info.radius_arg);
423 +    }else{
424 +      sprintf( painCave.errMsg,
425 +               "A particle radius (radius) must be specified when calculating Rho(r)");
426 +      painCave.severity = OPENMD_ERROR;
427 +      painCave.isFatal = 1;
428 +      simError();
429 +    }
430 +  } else if (args_info.hullvol_given) {
431 +    analyser = new NanoVolume(info, dumpFileName, sele1);
432 +  } else if (args_info.rodlength_given) {
433 +    analyser = new NanoLength(info, dumpFileName, sele1);
434 +  } else if (args_info.angle_r_given) {
435 +    analyser = new AngleR(info, dumpFileName, sele1, maxLen,args_info.nbins_arg);
436    }
437 <    
437 >  
438    if (args_info.output_given) {
439      analyser->setOutputName(args_info.output_arg);
440    }
441    if (args_info.step_given) {
442      analyser->setStep(args_info.step_arg);
443    }
444 <
444 >  
445    analyser->process();
446 <
446 >  
447    delete analyser;    
448    delete info;
449 <
449 >  
450    return 0;  
451   }
216

Comparing trunk/src/applications/staticProps/StaticProps.cpp (property svn:keywords):
Revision 980 by xsun, Thu Jun 1 18:06:33 2006 UTC vs.
Revision 2031 by jmichalk, Fri Oct 31 18:40:40 2014 UTC

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