34 |
|
* |
35 |
|
* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
36 |
|
* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
37 |
< |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
37 |
> |
* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). |
38 |
|
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
39 |
|
* [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). |
40 |
|
*/ |
54 |
|
NanoLength::NanoLength(SimInfo* info, |
55 |
|
const std::string& filename, |
56 |
|
const std::string& sele) |
57 |
< |
: StaticAnalyser(info, filename), selectionScript_(sele), evaluator_(info), seleMan_(info) { |
57 |
> |
: StaticAnalyser(info, filename), selectionScript_(sele), evaluator_(info), |
58 |
> |
seleMan_(info) { |
59 |
|
setOutputName(getPrefix(filename) + ".length"); |
60 |
|
|
61 |
|
osq.open(getOutputFileName().c_str()); |
119 |
|
osq << time << "\t" << rodLength << std::endl; |
120 |
|
} |
121 |
|
} |
122 |
+ |
osq.close(); |
123 |
|
} |
124 |
|
|
125 |
|
RealType NanoLength::getLength(std::vector<StuntDouble*> atoms) { |