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* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
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* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
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* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
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* [4] Vardeman & Gezelter, in progress (2009). |
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* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
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* [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * |
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* |
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– |
* |
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* Created by Xiuquan Sun on 05/09/06. |
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* @author Xiuquan Sun |
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* @version $Id: Hxy.cpp,v 1.8 2009-11-25 20:01:59 gezelter Exp $ |
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* @version $Id$ |
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* |
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*/ |
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errbin_sum_sq.clear(); |
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errbin_sq.clear(); |
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for(int i=0; i < bin.size(); i++) |
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for(unsigned int i=0; i < bin.size(); i++) |
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bin[i].clear(); |
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for(int i=0; i < samples.size(); i++) |
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for(unsigned int i=0; i < samples.size(); i++) |
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samples[i].clear(); |
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mag.clear(); |
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int nFrames = reader.getNFrames(); |
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nProcessed_ = nFrames/step_; |
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for(int k=0; k < bin.size(); k++) |
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for(unsigned int k=0; k < bin.size(); k++) |
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bin[k].resize(nFrames); |
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for(int k=0; k < samples.size(); k++) |
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for(unsigned int k=0; k < samples.size(); k++) |
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samples[k].resize(nFrames); |
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RealType lenX_, lenY_; |
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std::fill(errbin_sum_sq.begin(), errbin_sum_sq.end(), 0.0); |
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std::fill(errbin_sq.begin(), errbin_sq.end(), 0.0); |
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for(int i=0; i < bin.size(); i++) |
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for(unsigned int i=0; i < bin.size(); i++) |
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std::fill(bin[i].begin(), bin[i].end(), 0.0); |
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for(int i=0; i < samples.size(); i++) |
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for(unsigned int i=0; i < samples.size(); i++) |
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std::fill(samples[i].begin(), samples[i].end(), 0); |
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for (int istep = 0; istep < nFrames; istep += step_) { |