--- trunk/src/applications/staticProps/GofAngle2.cpp 2012/09/10 18:38:44 1796 +++ trunk/src/applications/staticProps/GofAngle2.cpp 2013/06/16 15:15:42 1879 @@ -35,7 +35,7 @@ * * [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). * [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). - * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). + * [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 234107 (2008). * [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). * [5] Vardeman, Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). */ @@ -43,6 +43,8 @@ #include #include #include "applications/staticProps/GofAngle2.hpp" +#include "primitives/Atom.hpp" +#include "types/MultipoleAdapter.hpp" #include "utils/simError.h" namespace OpenMD { @@ -96,8 +98,22 @@ namespace OpenMD { Vector3d r12 = pos1 - pos2; if (usePeriodicBoundaryConditions_) currentSnapshot_->wrapVector(r12); - Vector3d dipole1 = sd1->getElectroFrame().getColumn(2); - Vector3d dipole2 = sd2->getElectroFrame().getColumn(2); + + AtomType* atype1 = static_cast(sd1)->getAtomType(); + AtomType* atype2 = static_cast(sd2)->getAtomType(); + MultipoleAdapter ma1 = MultipoleAdapter(atype1); + MultipoleAdapter ma2 = MultipoleAdapter(atype2); + + Vector3d dipole1, dipole2; + if (ma1.isDipole()) + dipole1 = sd1->getDipole(); + else + dipole1 = sd1->getA().transpose() * V3Z; + + if (ma2.isDipole()) + dipole2 = sd2->getDipole(); + else + dipole2 = sd2->getA().transpose() * V3Z; r12.normalize(); dipole1.normalize();