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root/OpenMD/trunk/src/applications/sequentialProps/SequentialPropsCmd.cpp
Revision: 2039
Committed: Thu Nov 6 14:31:32 2014 UTC (10 years, 5 months ago) by gezelter
File size: 26670 byte(s)
Log Message:
Added a buffer length to ContactAngle2, starting documentation

File Contents

# Content
1 /*
2 File autogenerated by gengetopt version 2.22.4
3 generated with the following command:
4 gengetopt --file-name=SequentialPropsCmd --unamed-opts
5
6 The developers of gengetopt consider the fixed text that goes in all
7 gengetopt output files to be in the public domain:
8 we make no copyright claims on it.
9 */
10
11 /* If we use autoconf. */
12 #ifdef HAVE_CONFIG_H
13 #include "config.h"
14 #endif
15
16 #include <stdio.h>
17 #include <stdlib.h>
18 #include <string.h>
19
20 #ifndef FIX_UNUSED
21 #define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22 #endif
23
24 #ifdef WIN32
25 #include "utils/wingetopt.h"
26 #else
27 #include <getopt.h>
28 #endif
29
30 #include "SequentialPropsCmd.h"
31
32 const char *gengetopt_args_info_purpose = "";
33
34 const char *gengetopt_args_info_usage = "Usage: SequentialProps [OPTIONS]... [FILES]...";
35
36 const char *gengetopt_args_info_description = "";
37
38 const char *gengetopt_args_info_help[] = {
39 " -h, --help Print help and exit",
40 " -V, --version Print version and exit",
41 " -i, --input=filename input dump file",
42 " -o, --output=filename output file name",
43 " --sele1=selection script select first stuntdouble set",
44 " --sele2=selection script select second stuntdouble set (if sele2 is not \n set, use script from sele1)",
45 " -b, --nbins=INT number of bins (general purpose) \n (default=`100')",
46 " --nbins_z=INT number of bins in z axis (default=`100')",
47 " -z, --referenceZ=DOUBLE Reference z-height of solid surface",
48 " -r, --dropletR=DOUBLE Droplet radius in angstroms",
49 " --threshDens=DOUBLE Threshold Density in g/cm^3",
50 " --bufferLength=DOUBLE Buffer length in angstroms",
51 "\n Group: sequentialProps\n an option of this group is required",
52 " -c, --com selection center of mass",
53 " --ca1 contact angle of selection (using center of \n mass)",
54 " --ca2 contact angle of selection (using density \n profile)",
55 0
56 };
57
58 typedef enum {ARG_NO
59 , ARG_STRING
60 , ARG_INT
61 , ARG_DOUBLE
62 } cmdline_parser_arg_type;
63
64 static
65 void clear_given (struct gengetopt_args_info *args_info);
66 static
67 void clear_args (struct gengetopt_args_info *args_info);
68
69 static int
70 cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
71 struct cmdline_parser_params *params, const char *additional_error);
72
73 static int
74 cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
75
76 static char *
77 gengetopt_strdup (const char *s);
78
79 static
80 void clear_given (struct gengetopt_args_info *args_info)
81 {
82 args_info->help_given = 0 ;
83 args_info->version_given = 0 ;
84 args_info->input_given = 0 ;
85 args_info->output_given = 0 ;
86 args_info->sele1_given = 0 ;
87 args_info->sele2_given = 0 ;
88 args_info->nbins_given = 0 ;
89 args_info->nbins_z_given = 0 ;
90 args_info->referenceZ_given = 0 ;
91 args_info->dropletR_given = 0 ;
92 args_info->threshDens_given = 0 ;
93 args_info->bufferLength_given = 0 ;
94 args_info->com_given = 0 ;
95 args_info->ca1_given = 0 ;
96 args_info->ca2_given = 0 ;
97 args_info->sequentialProps_group_counter = 0 ;
98 }
99
100 static
101 void clear_args (struct gengetopt_args_info *args_info)
102 {
103 FIX_UNUSED (args_info);
104 args_info->input_arg = NULL;
105 args_info->input_orig = NULL;
106 args_info->output_arg = NULL;
107 args_info->output_orig = NULL;
108 args_info->sele1_arg = NULL;
109 args_info->sele1_orig = NULL;
110 args_info->sele2_arg = NULL;
111 args_info->sele2_orig = NULL;
112 args_info->nbins_arg = 100;
113 args_info->nbins_orig = NULL;
114 args_info->nbins_z_arg = 100;
115 args_info->nbins_z_orig = NULL;
116 args_info->referenceZ_orig = NULL;
117 args_info->dropletR_orig = NULL;
118 args_info->threshDens_orig = NULL;
119 args_info->bufferLength_orig = NULL;
120
121 }
122
123 static
124 void init_args_info(struct gengetopt_args_info *args_info)
125 {
126
127
128 args_info->help_help = gengetopt_args_info_help[0] ;
129 args_info->version_help = gengetopt_args_info_help[1] ;
130 args_info->input_help = gengetopt_args_info_help[2] ;
131 args_info->output_help = gengetopt_args_info_help[3] ;
132 args_info->sele1_help = gengetopt_args_info_help[4] ;
133 args_info->sele2_help = gengetopt_args_info_help[5] ;
134 args_info->nbins_help = gengetopt_args_info_help[6] ;
135 args_info->nbins_z_help = gengetopt_args_info_help[7] ;
136 args_info->referenceZ_help = gengetopt_args_info_help[8] ;
137 args_info->dropletR_help = gengetopt_args_info_help[9] ;
138 args_info->threshDens_help = gengetopt_args_info_help[10] ;
139 args_info->bufferLength_help = gengetopt_args_info_help[11] ;
140 args_info->com_help = gengetopt_args_info_help[13] ;
141 args_info->ca1_help = gengetopt_args_info_help[14] ;
142 args_info->ca2_help = gengetopt_args_info_help[15] ;
143
144 }
145
146 void
147 cmdline_parser_print_version (void)
148 {
149 printf ("%s %s\n",
150 (strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
151 CMDLINE_PARSER_VERSION);
152 }
153
154 static void print_help_common(void) {
155 cmdline_parser_print_version ();
156
157 if (strlen(gengetopt_args_info_purpose) > 0)
158 printf("\n%s\n", gengetopt_args_info_purpose);
159
160 if (strlen(gengetopt_args_info_usage) > 0)
161 printf("\n%s\n", gengetopt_args_info_usage);
162
163 printf("\n");
164
165 if (strlen(gengetopt_args_info_description) > 0)
166 printf("%s\n\n", gengetopt_args_info_description);
167 }
168
169 void
170 cmdline_parser_print_help (void)
171 {
172 int i = 0;
173 print_help_common();
174 while (gengetopt_args_info_help[i])
175 printf("%s\n", gengetopt_args_info_help[i++]);
176 }
177
178 void
179 cmdline_parser_init (struct gengetopt_args_info *args_info)
180 {
181 clear_given (args_info);
182 clear_args (args_info);
183 init_args_info (args_info);
184
185 args_info->inputs = 0;
186 args_info->inputs_num = 0;
187 }
188
189 void
190 cmdline_parser_params_init(struct cmdline_parser_params *params)
191 {
192 if (params)
193 {
194 params->override = 0;
195 params->initialize = 1;
196 params->check_required = 1;
197 params->check_ambiguity = 0;
198 params->print_errors = 1;
199 }
200 }
201
202 struct cmdline_parser_params *
203 cmdline_parser_params_create(void)
204 {
205 struct cmdline_parser_params *params =
206 (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
207 cmdline_parser_params_init(params);
208 return params;
209 }
210
211 static void
212 free_string_field (char **s)
213 {
214 if (*s)
215 {
216 free (*s);
217 *s = 0;
218 }
219 }
220
221
222 static void
223 cmdline_parser_release (struct gengetopt_args_info *args_info)
224 {
225 unsigned int i;
226 free_string_field (&(args_info->input_arg));
227 free_string_field (&(args_info->input_orig));
228 free_string_field (&(args_info->output_arg));
229 free_string_field (&(args_info->output_orig));
230 free_string_field (&(args_info->sele1_arg));
231 free_string_field (&(args_info->sele1_orig));
232 free_string_field (&(args_info->sele2_arg));
233 free_string_field (&(args_info->sele2_orig));
234 free_string_field (&(args_info->nbins_orig));
235 free_string_field (&(args_info->nbins_z_orig));
236 free_string_field (&(args_info->referenceZ_orig));
237 free_string_field (&(args_info->dropletR_orig));
238 free_string_field (&(args_info->threshDens_orig));
239 free_string_field (&(args_info->bufferLength_orig));
240
241
242 for (i = 0; i < args_info->inputs_num; ++i)
243 free (args_info->inputs [i]);
244
245 if (args_info->inputs_num)
246 free (args_info->inputs);
247
248 clear_given (args_info);
249 }
250
251
252 static void
253 write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
254 {
255 FIX_UNUSED (values);
256 if (arg) {
257 fprintf(outfile, "%s=\"%s\"\n", opt, arg);
258 } else {
259 fprintf(outfile, "%s\n", opt);
260 }
261 }
262
263
264 int
265 cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
266 {
267 int i = 0;
268
269 if (!outfile)
270 {
271 fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
272 return EXIT_FAILURE;
273 }
274
275 if (args_info->help_given)
276 write_into_file(outfile, "help", 0, 0 );
277 if (args_info->version_given)
278 write_into_file(outfile, "version", 0, 0 );
279 if (args_info->input_given)
280 write_into_file(outfile, "input", args_info->input_orig, 0);
281 if (args_info->output_given)
282 write_into_file(outfile, "output", args_info->output_orig, 0);
283 if (args_info->sele1_given)
284 write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
285 if (args_info->sele2_given)
286 write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
287 if (args_info->nbins_given)
288 write_into_file(outfile, "nbins", args_info->nbins_orig, 0);
289 if (args_info->nbins_z_given)
290 write_into_file(outfile, "nbins_z", args_info->nbins_z_orig, 0);
291 if (args_info->referenceZ_given)
292 write_into_file(outfile, "referenceZ", args_info->referenceZ_orig, 0);
293 if (args_info->dropletR_given)
294 write_into_file(outfile, "dropletR", args_info->dropletR_orig, 0);
295 if (args_info->threshDens_given)
296 write_into_file(outfile, "threshDens", args_info->threshDens_orig, 0);
297 if (args_info->bufferLength_given)
298 write_into_file(outfile, "bufferLength", args_info->bufferLength_orig, 0);
299 if (args_info->com_given)
300 write_into_file(outfile, "com", 0, 0 );
301 if (args_info->ca1_given)
302 write_into_file(outfile, "ca1", 0, 0 );
303 if (args_info->ca2_given)
304 write_into_file(outfile, "ca2", 0, 0 );
305
306
307 i = EXIT_SUCCESS;
308 return i;
309 }
310
311 int
312 cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
313 {
314 FILE *outfile;
315 int i = 0;
316
317 outfile = fopen(filename, "w");
318
319 if (!outfile)
320 {
321 fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
322 return EXIT_FAILURE;
323 }
324
325 i = cmdline_parser_dump(outfile, args_info);
326 fclose (outfile);
327
328 return i;
329 }
330
331 void
332 cmdline_parser_free (struct gengetopt_args_info *args_info)
333 {
334 cmdline_parser_release (args_info);
335 }
336
337 /** @brief replacement of strdup, which is not standard */
338 char *
339 gengetopt_strdup (const char *s)
340 {
341 char *result = 0;
342 if (!s)
343 return result;
344
345 result = (char*)malloc(strlen(s) + 1);
346 if (result == (char*)0)
347 return (char*)0;
348 strcpy(result, s);
349 return result;
350 }
351
352 static void
353 reset_group_sequentialProps(struct gengetopt_args_info *args_info)
354 {
355 if (! args_info->sequentialProps_group_counter)
356 return;
357
358 args_info->com_given = 0 ;
359 args_info->ca1_given = 0 ;
360 args_info->ca2_given = 0 ;
361
362 args_info->sequentialProps_group_counter = 0;
363 }
364
365 int
366 cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
367 {
368 return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
369 }
370
371 int
372 cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
373 struct cmdline_parser_params *params)
374 {
375 int result;
376 result = cmdline_parser_internal (argc, argv, args_info, params, 0);
377
378 if (result == EXIT_FAILURE)
379 {
380 cmdline_parser_free (args_info);
381 exit (EXIT_FAILURE);
382 }
383
384 return result;
385 }
386
387 int
388 cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
389 {
390 int result;
391 struct cmdline_parser_params params;
392
393 params.override = override;
394 params.initialize = initialize;
395 params.check_required = check_required;
396 params.check_ambiguity = 0;
397 params.print_errors = 1;
398
399 result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
400
401 if (result == EXIT_FAILURE)
402 {
403 cmdline_parser_free (args_info);
404 exit (EXIT_FAILURE);
405 }
406
407 return result;
408 }
409
410 int
411 cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
412 {
413 int result = EXIT_SUCCESS;
414
415 if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
416 result = EXIT_FAILURE;
417
418 if (result == EXIT_FAILURE)
419 {
420 cmdline_parser_free (args_info);
421 exit (EXIT_FAILURE);
422 }
423
424 return result;
425 }
426
427 int
428 cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
429 {
430 int error = 0;
431 FIX_UNUSED (additional_error);
432
433 /* checks for required options */
434 if (! args_info->input_given)
435 {
436 fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
437 error = 1;
438 }
439
440 if (args_info->sequentialProps_group_counter == 0)
441 {
442 fprintf (stderr, "%s: %d options of group sequentialProps were given. One is required%s.\n", prog_name, args_info->sequentialProps_group_counter, (additional_error ? additional_error : ""));
443 error = 1;
444 }
445
446
447 /* checks for dependences among options */
448
449 return error;
450 }
451
452
453 static char *package_name = 0;
454
455 /**
456 * @brief updates an option
457 * @param field the generic pointer to the field to update
458 * @param orig_field the pointer to the orig field
459 * @param field_given the pointer to the number of occurrence of this option
460 * @param prev_given the pointer to the number of occurrence already seen
461 * @param value the argument for this option (if null no arg was specified)
462 * @param possible_values the possible values for this option (if specified)
463 * @param default_value the default value (in case the option only accepts fixed values)
464 * @param arg_type the type of this option
465 * @param check_ambiguity @see cmdline_parser_params.check_ambiguity
466 * @param override @see cmdline_parser_params.override
467 * @param no_free whether to free a possible previous value
468 * @param multiple_option whether this is a multiple option
469 * @param long_opt the corresponding long option
470 * @param short_opt the corresponding short option (or '-' if none)
471 * @param additional_error possible further error specification
472 */
473 static
474 int update_arg(void *field, char **orig_field,
475 unsigned int *field_given, unsigned int *prev_given,
476 char *value, const char *possible_values[],
477 const char *default_value,
478 cmdline_parser_arg_type arg_type,
479 int check_ambiguity, int override,
480 int no_free, int multiple_option,
481 const char *long_opt, char short_opt,
482 const char *additional_error)
483 {
484 char *stop_char = 0;
485 const char *val = value;
486 int found;
487 char **string_field;
488 FIX_UNUSED (field);
489
490 stop_char = 0;
491 found = 0;
492
493 if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
494 {
495 if (short_opt != '-')
496 fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
497 package_name, long_opt, short_opt,
498 (additional_error ? additional_error : ""));
499 else
500 fprintf (stderr, "%s: `--%s' option given more than once%s\n",
501 package_name, long_opt,
502 (additional_error ? additional_error : ""));
503 return 1; /* failure */
504 }
505
506 FIX_UNUSED (default_value);
507
508 if (field_given && *field_given && ! override)
509 return 0;
510 if (prev_given)
511 (*prev_given)++;
512 if (field_given)
513 (*field_given)++;
514 if (possible_values)
515 val = possible_values[found];
516
517 switch(arg_type) {
518 case ARG_INT:
519 if (val) *((int *)field) = strtol (val, &stop_char, 0);
520 break;
521 case ARG_DOUBLE:
522 if (val) *((double *)field) = strtod (val, &stop_char);
523 break;
524 case ARG_STRING:
525 if (val) {
526 string_field = (char **)field;
527 if (!no_free && *string_field)
528 free (*string_field); /* free previous string */
529 *string_field = gengetopt_strdup (val);
530 }
531 break;
532 default:
533 break;
534 };
535
536 /* check numeric conversion */
537 switch(arg_type) {
538 case ARG_INT:
539 case ARG_DOUBLE:
540 if (val && !(stop_char && *stop_char == '\0')) {
541 fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
542 return 1; /* failure */
543 }
544 break;
545 default:
546 ;
547 };
548
549 /* store the original value */
550 switch(arg_type) {
551 case ARG_NO:
552 break;
553 default:
554 if (value && orig_field) {
555 if (no_free) {
556 *orig_field = value;
557 } else {
558 if (*orig_field)
559 free (*orig_field); /* free previous string */
560 *orig_field = gengetopt_strdup (value);
561 }
562 }
563 };
564
565 return 0; /* OK */
566 }
567
568
569 int
570 cmdline_parser_internal (
571 int argc, char **argv, struct gengetopt_args_info *args_info,
572 struct cmdline_parser_params *params, const char *additional_error)
573 {
574 int c; /* Character of the parsed option. */
575
576 int error = 0;
577 struct gengetopt_args_info local_args_info;
578
579 int override;
580 int initialize;
581 int check_required;
582 int check_ambiguity;
583
584 package_name = argv[0];
585
586 override = params->override;
587 initialize = params->initialize;
588 check_required = params->check_required;
589 check_ambiguity = params->check_ambiguity;
590
591 if (initialize)
592 cmdline_parser_init (args_info);
593
594 cmdline_parser_init (&local_args_info);
595
596 optarg = 0;
597 optind = 0;
598 opterr = params->print_errors;
599 optopt = '?';
600
601 while (1)
602 {
603 int option_index = 0;
604
605 static struct option long_options[] = {
606 { "help", 0, NULL, 'h' },
607 { "version", 0, NULL, 'V' },
608 { "input", 1, NULL, 'i' },
609 { "output", 1, NULL, 'o' },
610 { "sele1", 1, NULL, 0 },
611 { "sele2", 1, NULL, 0 },
612 { "nbins", 1, NULL, 'b' },
613 { "nbins_z", 1, NULL, 0 },
614 { "referenceZ", 1, NULL, 'z' },
615 { "dropletR", 1, NULL, 'r' },
616 { "threshDens", 1, NULL, 0 },
617 { "bufferLength", 1, NULL, 0 },
618 { "com", 0, NULL, 'c' },
619 { "ca1", 0, NULL, 0 },
620 { "ca2", 0, NULL, 0 },
621 { 0, 0, 0, 0 }
622 };
623
624 c = getopt_long (argc, argv, "hVi:o:b:z:r:c", long_options, &option_index);
625
626 if (c == -1) break; /* Exit from `while (1)' loop. */
627
628 switch (c)
629 {
630 case 'h': /* Print help and exit. */
631 cmdline_parser_print_help ();
632 cmdline_parser_free (&local_args_info);
633 exit (EXIT_SUCCESS);
634
635 case 'V': /* Print version and exit. */
636 cmdline_parser_print_version ();
637 cmdline_parser_free (&local_args_info);
638 exit (EXIT_SUCCESS);
639
640 case 'i': /* input dump file. */
641
642
643 if (update_arg( (void *)&(args_info->input_arg),
644 &(args_info->input_orig), &(args_info->input_given),
645 &(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
646 check_ambiguity, override, 0, 0,
647 "input", 'i',
648 additional_error))
649 goto failure;
650
651 break;
652 case 'o': /* output file name. */
653
654
655 if (update_arg( (void *)&(args_info->output_arg),
656 &(args_info->output_orig), &(args_info->output_given),
657 &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
658 check_ambiguity, override, 0, 0,
659 "output", 'o',
660 additional_error))
661 goto failure;
662
663 break;
664 case 'b': /* number of bins (general purpose). */
665
666
667 if (update_arg( (void *)&(args_info->nbins_arg),
668 &(args_info->nbins_orig), &(args_info->nbins_given),
669 &(local_args_info.nbins_given), optarg, 0, "100", ARG_INT,
670 check_ambiguity, override, 0, 0,
671 "nbins", 'b',
672 additional_error))
673 goto failure;
674
675 break;
676 case 'z': /* Reference z-height of solid surface. */
677
678
679 if (update_arg( (void *)&(args_info->referenceZ_arg),
680 &(args_info->referenceZ_orig), &(args_info->referenceZ_given),
681 &(local_args_info.referenceZ_given), optarg, 0, 0, ARG_DOUBLE,
682 check_ambiguity, override, 0, 0,
683 "referenceZ", 'z',
684 additional_error))
685 goto failure;
686
687 break;
688 case 'r': /* Droplet radius in angstroms. */
689
690
691 if (update_arg( (void *)&(args_info->dropletR_arg),
692 &(args_info->dropletR_orig), &(args_info->dropletR_given),
693 &(local_args_info.dropletR_given), optarg, 0, 0, ARG_DOUBLE,
694 check_ambiguity, override, 0, 0,
695 "dropletR", 'r',
696 additional_error))
697 goto failure;
698
699 break;
700 case 'c': /* selection center of mass. */
701
702 if (args_info->sequentialProps_group_counter && override)
703 reset_group_sequentialProps (args_info);
704 args_info->sequentialProps_group_counter += 1;
705
706 if (update_arg( 0 ,
707 0 , &(args_info->com_given),
708 &(local_args_info.com_given), optarg, 0, 0, ARG_NO,
709 check_ambiguity, override, 0, 0,
710 "com", 'c',
711 additional_error))
712 goto failure;
713
714 break;
715
716 case 0: /* Long option with no short option */
717 /* select first stuntdouble set. */
718 if (strcmp (long_options[option_index].name, "sele1") == 0)
719 {
720
721
722 if (update_arg( (void *)&(args_info->sele1_arg),
723 &(args_info->sele1_orig), &(args_info->sele1_given),
724 &(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
725 check_ambiguity, override, 0, 0,
726 "sele1", '-',
727 additional_error))
728 goto failure;
729
730 }
731 /* select second stuntdouble set (if sele2 is not set, use script from sele1). */
732 else if (strcmp (long_options[option_index].name, "sele2") == 0)
733 {
734
735
736 if (update_arg( (void *)&(args_info->sele2_arg),
737 &(args_info->sele2_orig), &(args_info->sele2_given),
738 &(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
739 check_ambiguity, override, 0, 0,
740 "sele2", '-',
741 additional_error))
742 goto failure;
743
744 }
745 /* number of bins in z axis. */
746 else if (strcmp (long_options[option_index].name, "nbins_z") == 0)
747 {
748
749
750 if (update_arg( (void *)&(args_info->nbins_z_arg),
751 &(args_info->nbins_z_orig), &(args_info->nbins_z_given),
752 &(local_args_info.nbins_z_given), optarg, 0, "100", ARG_INT,
753 check_ambiguity, override, 0, 0,
754 "nbins_z", '-',
755 additional_error))
756 goto failure;
757
758 }
759 /* Threshold Density in g/cm^3. */
760 else if (strcmp (long_options[option_index].name, "threshDens") == 0)
761 {
762
763
764 if (update_arg( (void *)&(args_info->threshDens_arg),
765 &(args_info->threshDens_orig), &(args_info->threshDens_given),
766 &(local_args_info.threshDens_given), optarg, 0, 0, ARG_DOUBLE,
767 check_ambiguity, override, 0, 0,
768 "threshDens", '-',
769 additional_error))
770 goto failure;
771
772 }
773 /* Buffer length in angstroms. */
774 else if (strcmp (long_options[option_index].name, "bufferLength") == 0)
775 {
776
777
778 if (update_arg( (void *)&(args_info->bufferLength_arg),
779 &(args_info->bufferLength_orig), &(args_info->bufferLength_given),
780 &(local_args_info.bufferLength_given), optarg, 0, 0, ARG_DOUBLE,
781 check_ambiguity, override, 0, 0,
782 "bufferLength", '-',
783 additional_error))
784 goto failure;
785
786 }
787 /* contact angle of selection (using center of mass). */
788 else if (strcmp (long_options[option_index].name, "ca1") == 0)
789 {
790
791 if (args_info->sequentialProps_group_counter && override)
792 reset_group_sequentialProps (args_info);
793 args_info->sequentialProps_group_counter += 1;
794
795 if (update_arg( 0 ,
796 0 , &(args_info->ca1_given),
797 &(local_args_info.ca1_given), optarg, 0, 0, ARG_NO,
798 check_ambiguity, override, 0, 0,
799 "ca1", '-',
800 additional_error))
801 goto failure;
802
803 }
804 /* contact angle of selection (using density profile). */
805 else if (strcmp (long_options[option_index].name, "ca2") == 0)
806 {
807
808 if (args_info->sequentialProps_group_counter && override)
809 reset_group_sequentialProps (args_info);
810 args_info->sequentialProps_group_counter += 1;
811
812 if (update_arg( 0 ,
813 0 , &(args_info->ca2_given),
814 &(local_args_info.ca2_given), optarg, 0, 0, ARG_NO,
815 check_ambiguity, override, 0, 0,
816 "ca2", '-',
817 additional_error))
818 goto failure;
819
820 }
821
822 break;
823 case '?': /* Invalid option. */
824 /* `getopt_long' already printed an error message. */
825 goto failure;
826
827 default: /* bug: option not considered. */
828 fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
829 abort ();
830 } /* switch */
831 } /* while */
832
833 if (args_info->sequentialProps_group_counter > 1)
834 {
835 fprintf (stderr, "%s: %d options of group sequentialProps were given. One is required%s.\n", argv[0], args_info->sequentialProps_group_counter, (additional_error ? additional_error : ""));
836 error = 1;
837 }
838
839
840
841 if (check_required)
842 {
843 error += cmdline_parser_required2 (args_info, argv[0], additional_error);
844 }
845
846 cmdline_parser_release (&local_args_info);
847
848 if ( error )
849 return (EXIT_FAILURE);
850
851 if (optind < argc)
852 {
853 int i = 0 ;
854 int found_prog_name = 0;
855 /* whether program name, i.e., argv[0], is in the remaining args
856 (this may happen with some implementations of getopt,
857 but surely not with the one included by gengetopt) */
858
859 i = optind;
860 while (i < argc)
861 if (argv[i++] == argv[0]) {
862 found_prog_name = 1;
863 break;
864 }
865 i = 0;
866
867 args_info->inputs_num = argc - optind - found_prog_name;
868 args_info->inputs =
869 (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
870 while (optind < argc)
871 if (argv[optind++] != argv[0])
872 args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
873 }
874
875 return 0;
876
877 failure:
878
879 cmdline_parser_release (&local_args_info);
880 return (EXIT_FAILURE);
881 }

Properties

Name Value
svn:eol-style native