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root/OpenMD/trunk/src/applications/sequentialProps/SequentialPropsCmd.cpp
Revision: 2039
Committed: Thu Nov 6 14:31:32 2014 UTC (10 years, 5 months ago) by gezelter
File size: 26670 byte(s)
Log Message:
Added a buffer length to ContactAngle2, starting documentation

File Contents

# User Rev Content
1 gezelter 2024 /*
2     File autogenerated by gengetopt version 2.22.4
3     generated with the following command:
4     gengetopt --file-name=SequentialPropsCmd --unamed-opts
5    
6     The developers of gengetopt consider the fixed text that goes in all
7     gengetopt output files to be in the public domain:
8     we make no copyright claims on it.
9     */
10    
11     /* If we use autoconf. */
12     #ifdef HAVE_CONFIG_H
13     #include "config.h"
14     #endif
15    
16     #include <stdio.h>
17     #include <stdlib.h>
18     #include <string.h>
19    
20     #ifndef FIX_UNUSED
21     #define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22     #endif
23    
24     #ifdef WIN32
25     #include "utils/wingetopt.h"
26     #else
27     #include <getopt.h>
28     #endif
29    
30     #include "SequentialPropsCmd.h"
31    
32     const char *gengetopt_args_info_purpose = "";
33    
34     const char *gengetopt_args_info_usage = "Usage: SequentialProps [OPTIONS]... [FILES]...";
35    
36     const char *gengetopt_args_info_description = "";
37    
38     const char *gengetopt_args_info_help[] = {
39     " -h, --help Print help and exit",
40     " -V, --version Print version and exit",
41     " -i, --input=filename input dump file",
42     " -o, --output=filename output file name",
43     " --sele1=selection script select first stuntdouble set",
44     " --sele2=selection script select second stuntdouble set (if sele2 is not \n set, use script from sele1)",
45 gezelter 2035 " -b, --nbins=INT number of bins (general purpose) \n (default=`100')",
46     " --nbins_z=INT number of bins in z axis (default=`100')",
47 gezelter 2029 " -z, --referenceZ=DOUBLE Reference z-height of solid surface",
48     " -r, --dropletR=DOUBLE Droplet radius in angstroms",
49 gezelter 2035 " --threshDens=DOUBLE Threshold Density in g/cm^3",
50 gezelter 2039 " --bufferLength=DOUBLE Buffer length in angstroms",
51 gezelter 2024 "\n Group: sequentialProps\n an option of this group is required",
52 gezelter 2029 " -c, --com selection center of mass",
53     " --ca1 contact angle of selection (using center of \n mass)",
54     " --ca2 contact angle of selection (using density \n profile)",
55 gezelter 2024 0
56     };
57    
58     typedef enum {ARG_NO
59     , ARG_STRING
60     , ARG_INT
61 gezelter 2029 , ARG_DOUBLE
62 gezelter 2024 } cmdline_parser_arg_type;
63    
64     static
65     void clear_given (struct gengetopt_args_info *args_info);
66     static
67     void clear_args (struct gengetopt_args_info *args_info);
68    
69     static int
70     cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
71     struct cmdline_parser_params *params, const char *additional_error);
72    
73     static int
74     cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
75    
76     static char *
77     gengetopt_strdup (const char *s);
78    
79     static
80     void clear_given (struct gengetopt_args_info *args_info)
81     {
82     args_info->help_given = 0 ;
83     args_info->version_given = 0 ;
84     args_info->input_given = 0 ;
85     args_info->output_given = 0 ;
86     args_info->sele1_given = 0 ;
87     args_info->sele2_given = 0 ;
88     args_info->nbins_given = 0 ;
89 gezelter 2035 args_info->nbins_z_given = 0 ;
90 gezelter 2029 args_info->referenceZ_given = 0 ;
91     args_info->dropletR_given = 0 ;
92 gezelter 2035 args_info->threshDens_given = 0 ;
93 gezelter 2039 args_info->bufferLength_given = 0 ;
94 gezelter 2029 args_info->com_given = 0 ;
95     args_info->ca1_given = 0 ;
96     args_info->ca2_given = 0 ;
97 gezelter 2024 args_info->sequentialProps_group_counter = 0 ;
98     }
99    
100     static
101     void clear_args (struct gengetopt_args_info *args_info)
102     {
103     FIX_UNUSED (args_info);
104     args_info->input_arg = NULL;
105     args_info->input_orig = NULL;
106     args_info->output_arg = NULL;
107     args_info->output_orig = NULL;
108     args_info->sele1_arg = NULL;
109     args_info->sele1_orig = NULL;
110     args_info->sele2_arg = NULL;
111     args_info->sele2_orig = NULL;
112     args_info->nbins_arg = 100;
113     args_info->nbins_orig = NULL;
114 gezelter 2035 args_info->nbins_z_arg = 100;
115     args_info->nbins_z_orig = NULL;
116 gezelter 2029 args_info->referenceZ_orig = NULL;
117     args_info->dropletR_orig = NULL;
118 gezelter 2035 args_info->threshDens_orig = NULL;
119 gezelter 2039 args_info->bufferLength_orig = NULL;
120 gezelter 2024
121     }
122    
123     static
124     void init_args_info(struct gengetopt_args_info *args_info)
125     {
126    
127    
128     args_info->help_help = gengetopt_args_info_help[0] ;
129     args_info->version_help = gengetopt_args_info_help[1] ;
130     args_info->input_help = gengetopt_args_info_help[2] ;
131     args_info->output_help = gengetopt_args_info_help[3] ;
132     args_info->sele1_help = gengetopt_args_info_help[4] ;
133     args_info->sele2_help = gengetopt_args_info_help[5] ;
134     args_info->nbins_help = gengetopt_args_info_help[6] ;
135 gezelter 2035 args_info->nbins_z_help = gengetopt_args_info_help[7] ;
136     args_info->referenceZ_help = gengetopt_args_info_help[8] ;
137     args_info->dropletR_help = gengetopt_args_info_help[9] ;
138     args_info->threshDens_help = gengetopt_args_info_help[10] ;
139 gezelter 2039 args_info->bufferLength_help = gengetopt_args_info_help[11] ;
140     args_info->com_help = gengetopt_args_info_help[13] ;
141     args_info->ca1_help = gengetopt_args_info_help[14] ;
142     args_info->ca2_help = gengetopt_args_info_help[15] ;
143 gezelter 2024
144     }
145    
146     void
147     cmdline_parser_print_version (void)
148     {
149     printf ("%s %s\n",
150     (strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
151     CMDLINE_PARSER_VERSION);
152     }
153    
154     static void print_help_common(void) {
155     cmdline_parser_print_version ();
156    
157     if (strlen(gengetopt_args_info_purpose) > 0)
158     printf("\n%s\n", gengetopt_args_info_purpose);
159    
160     if (strlen(gengetopt_args_info_usage) > 0)
161     printf("\n%s\n", gengetopt_args_info_usage);
162    
163     printf("\n");
164    
165     if (strlen(gengetopt_args_info_description) > 0)
166     printf("%s\n\n", gengetopt_args_info_description);
167     }
168    
169     void
170     cmdline_parser_print_help (void)
171     {
172     int i = 0;
173     print_help_common();
174     while (gengetopt_args_info_help[i])
175     printf("%s\n", gengetopt_args_info_help[i++]);
176     }
177    
178     void
179     cmdline_parser_init (struct gengetopt_args_info *args_info)
180     {
181     clear_given (args_info);
182     clear_args (args_info);
183     init_args_info (args_info);
184    
185     args_info->inputs = 0;
186     args_info->inputs_num = 0;
187     }
188    
189     void
190     cmdline_parser_params_init(struct cmdline_parser_params *params)
191     {
192     if (params)
193     {
194     params->override = 0;
195     params->initialize = 1;
196     params->check_required = 1;
197     params->check_ambiguity = 0;
198     params->print_errors = 1;
199     }
200     }
201    
202     struct cmdline_parser_params *
203     cmdline_parser_params_create(void)
204     {
205     struct cmdline_parser_params *params =
206     (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
207     cmdline_parser_params_init(params);
208     return params;
209     }
210    
211     static void
212     free_string_field (char **s)
213     {
214     if (*s)
215     {
216     free (*s);
217     *s = 0;
218     }
219     }
220    
221    
222     static void
223     cmdline_parser_release (struct gengetopt_args_info *args_info)
224     {
225     unsigned int i;
226     free_string_field (&(args_info->input_arg));
227     free_string_field (&(args_info->input_orig));
228     free_string_field (&(args_info->output_arg));
229     free_string_field (&(args_info->output_orig));
230     free_string_field (&(args_info->sele1_arg));
231     free_string_field (&(args_info->sele1_orig));
232     free_string_field (&(args_info->sele2_arg));
233     free_string_field (&(args_info->sele2_orig));
234     free_string_field (&(args_info->nbins_orig));
235 gezelter 2035 free_string_field (&(args_info->nbins_z_orig));
236 gezelter 2029 free_string_field (&(args_info->referenceZ_orig));
237     free_string_field (&(args_info->dropletR_orig));
238 gezelter 2035 free_string_field (&(args_info->threshDens_orig));
239 gezelter 2039 free_string_field (&(args_info->bufferLength_orig));
240 gezelter 2024
241    
242     for (i = 0; i < args_info->inputs_num; ++i)
243     free (args_info->inputs [i]);
244    
245     if (args_info->inputs_num)
246     free (args_info->inputs);
247    
248     clear_given (args_info);
249     }
250    
251    
252     static void
253     write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
254     {
255     FIX_UNUSED (values);
256     if (arg) {
257     fprintf(outfile, "%s=\"%s\"\n", opt, arg);
258     } else {
259     fprintf(outfile, "%s\n", opt);
260     }
261     }
262    
263    
264     int
265     cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
266     {
267     int i = 0;
268    
269     if (!outfile)
270     {
271     fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
272     return EXIT_FAILURE;
273     }
274    
275     if (args_info->help_given)
276     write_into_file(outfile, "help", 0, 0 );
277     if (args_info->version_given)
278     write_into_file(outfile, "version", 0, 0 );
279     if (args_info->input_given)
280     write_into_file(outfile, "input", args_info->input_orig, 0);
281     if (args_info->output_given)
282     write_into_file(outfile, "output", args_info->output_orig, 0);
283     if (args_info->sele1_given)
284     write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
285     if (args_info->sele2_given)
286     write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
287     if (args_info->nbins_given)
288     write_into_file(outfile, "nbins", args_info->nbins_orig, 0);
289 gezelter 2035 if (args_info->nbins_z_given)
290     write_into_file(outfile, "nbins_z", args_info->nbins_z_orig, 0);
291 gezelter 2029 if (args_info->referenceZ_given)
292     write_into_file(outfile, "referenceZ", args_info->referenceZ_orig, 0);
293     if (args_info->dropletR_given)
294     write_into_file(outfile, "dropletR", args_info->dropletR_orig, 0);
295 gezelter 2035 if (args_info->threshDens_given)
296     write_into_file(outfile, "threshDens", args_info->threshDens_orig, 0);
297 gezelter 2039 if (args_info->bufferLength_given)
298     write_into_file(outfile, "bufferLength", args_info->bufferLength_orig, 0);
299 gezelter 2029 if (args_info->com_given)
300     write_into_file(outfile, "com", 0, 0 );
301     if (args_info->ca1_given)
302     write_into_file(outfile, "ca1", 0, 0 );
303     if (args_info->ca2_given)
304     write_into_file(outfile, "ca2", 0, 0 );
305 gezelter 2024
306    
307     i = EXIT_SUCCESS;
308     return i;
309     }
310    
311     int
312     cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
313     {
314     FILE *outfile;
315     int i = 0;
316    
317     outfile = fopen(filename, "w");
318    
319     if (!outfile)
320     {
321     fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
322     return EXIT_FAILURE;
323     }
324    
325     i = cmdline_parser_dump(outfile, args_info);
326     fclose (outfile);
327    
328     return i;
329     }
330    
331     void
332     cmdline_parser_free (struct gengetopt_args_info *args_info)
333     {
334     cmdline_parser_release (args_info);
335     }
336    
337     /** @brief replacement of strdup, which is not standard */
338     char *
339     gengetopt_strdup (const char *s)
340     {
341     char *result = 0;
342     if (!s)
343     return result;
344    
345     result = (char*)malloc(strlen(s) + 1);
346     if (result == (char*)0)
347     return (char*)0;
348     strcpy(result, s);
349     return result;
350     }
351    
352     static void
353     reset_group_sequentialProps(struct gengetopt_args_info *args_info)
354     {
355     if (! args_info->sequentialProps_group_counter)
356     return;
357    
358 gezelter 2029 args_info->com_given = 0 ;
359     args_info->ca1_given = 0 ;
360     args_info->ca2_given = 0 ;
361 gezelter 2024
362     args_info->sequentialProps_group_counter = 0;
363     }
364    
365     int
366     cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
367     {
368     return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
369     }
370    
371     int
372     cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
373     struct cmdline_parser_params *params)
374     {
375     int result;
376     result = cmdline_parser_internal (argc, argv, args_info, params, 0);
377    
378     if (result == EXIT_FAILURE)
379     {
380     cmdline_parser_free (args_info);
381     exit (EXIT_FAILURE);
382     }
383    
384     return result;
385     }
386    
387     int
388     cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
389     {
390     int result;
391     struct cmdline_parser_params params;
392    
393     params.override = override;
394     params.initialize = initialize;
395     params.check_required = check_required;
396     params.check_ambiguity = 0;
397     params.print_errors = 1;
398    
399     result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
400    
401     if (result == EXIT_FAILURE)
402     {
403     cmdline_parser_free (args_info);
404     exit (EXIT_FAILURE);
405     }
406    
407     return result;
408     }
409    
410     int
411     cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
412     {
413     int result = EXIT_SUCCESS;
414    
415     if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
416     result = EXIT_FAILURE;
417    
418     if (result == EXIT_FAILURE)
419     {
420     cmdline_parser_free (args_info);
421     exit (EXIT_FAILURE);
422     }
423    
424     return result;
425     }
426    
427     int
428     cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
429     {
430     int error = 0;
431     FIX_UNUSED (additional_error);
432    
433     /* checks for required options */
434     if (! args_info->input_given)
435     {
436     fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
437     error = 1;
438     }
439    
440     if (args_info->sequentialProps_group_counter == 0)
441     {
442     fprintf (stderr, "%s: %d options of group sequentialProps were given. One is required%s.\n", prog_name, args_info->sequentialProps_group_counter, (additional_error ? additional_error : ""));
443     error = 1;
444     }
445    
446    
447     /* checks for dependences among options */
448    
449     return error;
450     }
451    
452    
453     static char *package_name = 0;
454    
455     /**
456     * @brief updates an option
457     * @param field the generic pointer to the field to update
458     * @param orig_field the pointer to the orig field
459     * @param field_given the pointer to the number of occurrence of this option
460     * @param prev_given the pointer to the number of occurrence already seen
461     * @param value the argument for this option (if null no arg was specified)
462     * @param possible_values the possible values for this option (if specified)
463     * @param default_value the default value (in case the option only accepts fixed values)
464     * @param arg_type the type of this option
465     * @param check_ambiguity @see cmdline_parser_params.check_ambiguity
466     * @param override @see cmdline_parser_params.override
467     * @param no_free whether to free a possible previous value
468     * @param multiple_option whether this is a multiple option
469     * @param long_opt the corresponding long option
470     * @param short_opt the corresponding short option (or '-' if none)
471     * @param additional_error possible further error specification
472     */
473     static
474     int update_arg(void *field, char **orig_field,
475     unsigned int *field_given, unsigned int *prev_given,
476     char *value, const char *possible_values[],
477     const char *default_value,
478     cmdline_parser_arg_type arg_type,
479     int check_ambiguity, int override,
480     int no_free, int multiple_option,
481     const char *long_opt, char short_opt,
482     const char *additional_error)
483     {
484     char *stop_char = 0;
485     const char *val = value;
486     int found;
487     char **string_field;
488     FIX_UNUSED (field);
489    
490     stop_char = 0;
491     found = 0;
492    
493     if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
494     {
495     if (short_opt != '-')
496     fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
497     package_name, long_opt, short_opt,
498     (additional_error ? additional_error : ""));
499     else
500     fprintf (stderr, "%s: `--%s' option given more than once%s\n",
501     package_name, long_opt,
502     (additional_error ? additional_error : ""));
503     return 1; /* failure */
504     }
505    
506     FIX_UNUSED (default_value);
507    
508     if (field_given && *field_given && ! override)
509     return 0;
510     if (prev_given)
511     (*prev_given)++;
512     if (field_given)
513     (*field_given)++;
514     if (possible_values)
515     val = possible_values[found];
516    
517     switch(arg_type) {
518     case ARG_INT:
519     if (val) *((int *)field) = strtol (val, &stop_char, 0);
520     break;
521 gezelter 2029 case ARG_DOUBLE:
522     if (val) *((double *)field) = strtod (val, &stop_char);
523     break;
524 gezelter 2024 case ARG_STRING:
525     if (val) {
526     string_field = (char **)field;
527     if (!no_free && *string_field)
528     free (*string_field); /* free previous string */
529     *string_field = gengetopt_strdup (val);
530     }
531     break;
532     default:
533     break;
534     };
535    
536     /* check numeric conversion */
537     switch(arg_type) {
538     case ARG_INT:
539 gezelter 2029 case ARG_DOUBLE:
540 gezelter 2024 if (val && !(stop_char && *stop_char == '\0')) {
541     fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
542     return 1; /* failure */
543     }
544     break;
545     default:
546     ;
547     };
548    
549     /* store the original value */
550     switch(arg_type) {
551     case ARG_NO:
552     break;
553     default:
554     if (value && orig_field) {
555     if (no_free) {
556     *orig_field = value;
557     } else {
558     if (*orig_field)
559     free (*orig_field); /* free previous string */
560     *orig_field = gengetopt_strdup (value);
561     }
562     }
563     };
564    
565     return 0; /* OK */
566     }
567    
568    
569     int
570     cmdline_parser_internal (
571     int argc, char **argv, struct gengetopt_args_info *args_info,
572     struct cmdline_parser_params *params, const char *additional_error)
573     {
574     int c; /* Character of the parsed option. */
575    
576     int error = 0;
577     struct gengetopt_args_info local_args_info;
578    
579     int override;
580     int initialize;
581     int check_required;
582     int check_ambiguity;
583    
584     package_name = argv[0];
585    
586     override = params->override;
587     initialize = params->initialize;
588     check_required = params->check_required;
589     check_ambiguity = params->check_ambiguity;
590    
591     if (initialize)
592     cmdline_parser_init (args_info);
593    
594     cmdline_parser_init (&local_args_info);
595    
596     optarg = 0;
597     optind = 0;
598     opterr = params->print_errors;
599     optopt = '?';
600    
601     while (1)
602     {
603     int option_index = 0;
604    
605     static struct option long_options[] = {
606     { "help", 0, NULL, 'h' },
607     { "version", 0, NULL, 'V' },
608     { "input", 1, NULL, 'i' },
609     { "output", 1, NULL, 'o' },
610     { "sele1", 1, NULL, 0 },
611     { "sele2", 1, NULL, 0 },
612 gezelter 2035 { "nbins", 1, NULL, 'b' },
613     { "nbins_z", 1, NULL, 0 },
614 gezelter 2029 { "referenceZ", 1, NULL, 'z' },
615     { "dropletR", 1, NULL, 'r' },
616 gezelter 2035 { "threshDens", 1, NULL, 0 },
617 gezelter 2039 { "bufferLength", 1, NULL, 0 },
618 gezelter 2029 { "com", 0, NULL, 'c' },
619     { "ca1", 0, NULL, 0 },
620     { "ca2", 0, NULL, 0 },
621 gezelter 2024 { 0, 0, 0, 0 }
622     };
623    
624 gezelter 2035 c = getopt_long (argc, argv, "hVi:o:b:z:r:c", long_options, &option_index);
625 gezelter 2024
626     if (c == -1) break; /* Exit from `while (1)' loop. */
627    
628     switch (c)
629     {
630     case 'h': /* Print help and exit. */
631     cmdline_parser_print_help ();
632     cmdline_parser_free (&local_args_info);
633     exit (EXIT_SUCCESS);
634    
635     case 'V': /* Print version and exit. */
636     cmdline_parser_print_version ();
637     cmdline_parser_free (&local_args_info);
638     exit (EXIT_SUCCESS);
639    
640     case 'i': /* input dump file. */
641    
642    
643     if (update_arg( (void *)&(args_info->input_arg),
644     &(args_info->input_orig), &(args_info->input_given),
645     &(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
646     check_ambiguity, override, 0, 0,
647     "input", 'i',
648     additional_error))
649     goto failure;
650    
651     break;
652     case 'o': /* output file name. */
653    
654    
655     if (update_arg( (void *)&(args_info->output_arg),
656     &(args_info->output_orig), &(args_info->output_given),
657     &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
658     check_ambiguity, override, 0, 0,
659     "output", 'o',
660     additional_error))
661     goto failure;
662    
663     break;
664 gezelter 2035 case 'b': /* number of bins (general purpose). */
665 gezelter 2024
666    
667     if (update_arg( (void *)&(args_info->nbins_arg),
668     &(args_info->nbins_orig), &(args_info->nbins_given),
669     &(local_args_info.nbins_given), optarg, 0, "100", ARG_INT,
670     check_ambiguity, override, 0, 0,
671 gezelter 2035 "nbins", 'b',
672 gezelter 2024 additional_error))
673     goto failure;
674    
675     break;
676 gezelter 2029 case 'z': /* Reference z-height of solid surface. */
677 gezelter 2024
678 gezelter 2029
679     if (update_arg( (void *)&(args_info->referenceZ_arg),
680     &(args_info->referenceZ_orig), &(args_info->referenceZ_given),
681     &(local_args_info.referenceZ_given), optarg, 0, 0, ARG_DOUBLE,
682     check_ambiguity, override, 0, 0,
683     "referenceZ", 'z',
684     additional_error))
685     goto failure;
686    
687     break;
688     case 'r': /* Droplet radius in angstroms. */
689    
690    
691     if (update_arg( (void *)&(args_info->dropletR_arg),
692     &(args_info->dropletR_orig), &(args_info->dropletR_given),
693     &(local_args_info.dropletR_given), optarg, 0, 0, ARG_DOUBLE,
694     check_ambiguity, override, 0, 0,
695     "dropletR", 'r',
696     additional_error))
697     goto failure;
698    
699     break;
700     case 'c': /* selection center of mass. */
701    
702 gezelter 2024 if (args_info->sequentialProps_group_counter && override)
703     reset_group_sequentialProps (args_info);
704     args_info->sequentialProps_group_counter += 1;
705    
706     if (update_arg( 0 ,
707 gezelter 2029 0 , &(args_info->com_given),
708     &(local_args_info.com_given), optarg, 0, 0, ARG_NO,
709 gezelter 2024 check_ambiguity, override, 0, 0,
710 gezelter 2029 "com", 'c',
711 gezelter 2024 additional_error))
712     goto failure;
713    
714     break;
715    
716     case 0: /* Long option with no short option */
717     /* select first stuntdouble set. */
718     if (strcmp (long_options[option_index].name, "sele1") == 0)
719     {
720    
721    
722     if (update_arg( (void *)&(args_info->sele1_arg),
723     &(args_info->sele1_orig), &(args_info->sele1_given),
724     &(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
725     check_ambiguity, override, 0, 0,
726     "sele1", '-',
727     additional_error))
728     goto failure;
729    
730     }
731     /* select second stuntdouble set (if sele2 is not set, use script from sele1). */
732     else if (strcmp (long_options[option_index].name, "sele2") == 0)
733     {
734    
735    
736     if (update_arg( (void *)&(args_info->sele2_arg),
737     &(args_info->sele2_orig), &(args_info->sele2_given),
738     &(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
739     check_ambiguity, override, 0, 0,
740     "sele2", '-',
741     additional_error))
742     goto failure;
743    
744     }
745 gezelter 2035 /* number of bins in z axis. */
746     else if (strcmp (long_options[option_index].name, "nbins_z") == 0)
747     {
748    
749    
750     if (update_arg( (void *)&(args_info->nbins_z_arg),
751     &(args_info->nbins_z_orig), &(args_info->nbins_z_given),
752     &(local_args_info.nbins_z_given), optarg, 0, "100", ARG_INT,
753     check_ambiguity, override, 0, 0,
754     "nbins_z", '-',
755     additional_error))
756     goto failure;
757    
758     }
759     /* Threshold Density in g/cm^3. */
760     else if (strcmp (long_options[option_index].name, "threshDens") == 0)
761     {
762    
763    
764     if (update_arg( (void *)&(args_info->threshDens_arg),
765     &(args_info->threshDens_orig), &(args_info->threshDens_given),
766     &(local_args_info.threshDens_given), optarg, 0, 0, ARG_DOUBLE,
767     check_ambiguity, override, 0, 0,
768     "threshDens", '-',
769     additional_error))
770     goto failure;
771    
772     }
773 gezelter 2039 /* Buffer length in angstroms. */
774     else if (strcmp (long_options[option_index].name, "bufferLength") == 0)
775     {
776    
777    
778     if (update_arg( (void *)&(args_info->bufferLength_arg),
779     &(args_info->bufferLength_orig), &(args_info->bufferLength_given),
780     &(local_args_info.bufferLength_given), optarg, 0, 0, ARG_DOUBLE,
781     check_ambiguity, override, 0, 0,
782     "bufferLength", '-',
783     additional_error))
784     goto failure;
785    
786     }
787 gezelter 2029 /* contact angle of selection (using center of mass). */
788     else if (strcmp (long_options[option_index].name, "ca1") == 0)
789     {
790 gezelter 2024
791 gezelter 2029 if (args_info->sequentialProps_group_counter && override)
792     reset_group_sequentialProps (args_info);
793     args_info->sequentialProps_group_counter += 1;
794    
795     if (update_arg( 0 ,
796     0 , &(args_info->ca1_given),
797     &(local_args_info.ca1_given), optarg, 0, 0, ARG_NO,
798     check_ambiguity, override, 0, 0,
799     "ca1", '-',
800     additional_error))
801     goto failure;
802    
803     }
804     /* contact angle of selection (using density profile). */
805     else if (strcmp (long_options[option_index].name, "ca2") == 0)
806     {
807    
808     if (args_info->sequentialProps_group_counter && override)
809     reset_group_sequentialProps (args_info);
810     args_info->sequentialProps_group_counter += 1;
811    
812     if (update_arg( 0 ,
813     0 , &(args_info->ca2_given),
814     &(local_args_info.ca2_given), optarg, 0, 0, ARG_NO,
815     check_ambiguity, override, 0, 0,
816     "ca2", '-',
817     additional_error))
818     goto failure;
819    
820     }
821    
822 gezelter 2024 break;
823     case '?': /* Invalid option. */
824     /* `getopt_long' already printed an error message. */
825     goto failure;
826    
827     default: /* bug: option not considered. */
828     fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
829     abort ();
830     } /* switch */
831     } /* while */
832    
833     if (args_info->sequentialProps_group_counter > 1)
834     {
835     fprintf (stderr, "%s: %d options of group sequentialProps were given. One is required%s.\n", argv[0], args_info->sequentialProps_group_counter, (additional_error ? additional_error : ""));
836     error = 1;
837     }
838    
839    
840    
841     if (check_required)
842     {
843     error += cmdline_parser_required2 (args_info, argv[0], additional_error);
844     }
845    
846     cmdline_parser_release (&local_args_info);
847    
848     if ( error )
849     return (EXIT_FAILURE);
850    
851     if (optind < argc)
852     {
853     int i = 0 ;
854     int found_prog_name = 0;
855     /* whether program name, i.e., argv[0], is in the remaining args
856     (this may happen with some implementations of getopt,
857     but surely not with the one included by gengetopt) */
858    
859     i = optind;
860     while (i < argc)
861     if (argv[i++] == argv[0]) {
862     found_prog_name = 1;
863     break;
864     }
865     i = 0;
866    
867     args_info->inputs_num = argc - optind - found_prog_name;
868     args_info->inputs =
869     (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
870     while (optind < argc)
871     if (argv[optind++] != argv[0])
872     args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
873     }
874    
875     return 0;
876    
877     failure:
878    
879     cmdline_parser_release (&local_args_info);
880     return (EXIT_FAILURE);
881     }

Properties

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