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root/OpenMD/trunk/src/applications/recenter/recenterCmd.cpp
Revision: 1857
Committed: Wed Apr 3 18:27:48 2013 UTC (12 years, 1 month ago) by kstocke1
Original Path: branches/development/src/applications/recenter/recenterCmd.cpp
File size: 14015 byte(s)
Log Message:
Added utility to recenter a simulation on the center of mass

File Contents

# Content
1 /*
2 File autogenerated by gengetopt version 2.22.4
3 generated with the following command:
4 gengetopt --file-name recenterCmd --unamed-opts
5
6 The developers of gengetopt consider the fixed text that goes in all
7 gengetopt output files to be in the public domain:
8 we make no copyright claims on it.
9 */
10
11 /* If we use autoconf. */
12 #ifdef HAVE_CONFIG_H
13 #include "config.h"
14 #endif
15
16 #include <stdio.h>
17 #include <stdlib.h>
18 #include <string.h>
19
20 #ifndef FIX_UNUSED
21 #define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22 #endif
23
24 #include <getopt.h>
25
26 #include "recenterCmd.h"
27
28 const char *gengetopt_args_info_purpose = "Moves all integrable objects in an OpenMD file so that the center of mass is at \nthe origin.";
29
30 const char *gengetopt_args_info_usage = "Usage: recenter [OPTIONS]... [FILES]...";
31
32 const char *gengetopt_args_info_description = "";
33
34 const char *gengetopt_args_info_help[] = {
35 " -h, --help Print help and exit",
36 " -V, --version Print version and exit",
37 " -o, --output=STRING Output file name",
38 0
39 };
40
41 typedef enum {ARG_NO
42 , ARG_STRING
43 } cmdline_parser_arg_type;
44
45 static
46 void clear_given (struct gengetopt_args_info *args_info);
47 static
48 void clear_args (struct gengetopt_args_info *args_info);
49
50 static int
51 cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
52 struct cmdline_parser_params *params, const char *additional_error);
53
54 static int
55 cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
56
57 static char *
58 gengetopt_strdup (const char *s);
59
60 static
61 void clear_given (struct gengetopt_args_info *args_info)
62 {
63 args_info->help_given = 0 ;
64 args_info->version_given = 0 ;
65 args_info->output_given = 0 ;
66 }
67
68 static
69 void clear_args (struct gengetopt_args_info *args_info)
70 {
71 FIX_UNUSED (args_info);
72 args_info->output_arg = NULL;
73 args_info->output_orig = NULL;
74
75 }
76
77 static
78 void init_args_info(struct gengetopt_args_info *args_info)
79 {
80
81
82 args_info->help_help = gengetopt_args_info_help[0] ;
83 args_info->version_help = gengetopt_args_info_help[1] ;
84 args_info->output_help = gengetopt_args_info_help[2] ;
85
86 }
87
88 void
89 cmdline_parser_print_version (void)
90 {
91 printf ("%s %s\n",
92 (strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
93 CMDLINE_PARSER_VERSION);
94 }
95
96 static void print_help_common(void) {
97 cmdline_parser_print_version ();
98
99 if (strlen(gengetopt_args_info_purpose) > 0)
100 printf("\n%s\n", gengetopt_args_info_purpose);
101
102 if (strlen(gengetopt_args_info_usage) > 0)
103 printf("\n%s\n", gengetopt_args_info_usage);
104
105 printf("\n");
106
107 if (strlen(gengetopt_args_info_description) > 0)
108 printf("%s\n\n", gengetopt_args_info_description);
109 }
110
111 void
112 cmdline_parser_print_help (void)
113 {
114 int i = 0;
115 print_help_common();
116 while (gengetopt_args_info_help[i])
117 printf("%s\n", gengetopt_args_info_help[i++]);
118 }
119
120 void
121 cmdline_parser_init (struct gengetopt_args_info *args_info)
122 {
123 clear_given (args_info);
124 clear_args (args_info);
125 init_args_info (args_info);
126
127 args_info->inputs = 0;
128 args_info->inputs_num = 0;
129 }
130
131 void
132 cmdline_parser_params_init(struct cmdline_parser_params *params)
133 {
134 if (params)
135 {
136 params->override = 0;
137 params->initialize = 1;
138 params->check_required = 1;
139 params->check_ambiguity = 0;
140 params->print_errors = 1;
141 }
142 }
143
144 struct cmdline_parser_params *
145 cmdline_parser_params_create(void)
146 {
147 struct cmdline_parser_params *params =
148 (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
149 cmdline_parser_params_init(params);
150 return params;
151 }
152
153 static void
154 free_string_field (char **s)
155 {
156 if (*s)
157 {
158 free (*s);
159 *s = 0;
160 }
161 }
162
163
164 static void
165 cmdline_parser_release (struct gengetopt_args_info *args_info)
166 {
167 unsigned int i;
168 free_string_field (&(args_info->output_arg));
169 free_string_field (&(args_info->output_orig));
170
171
172 for (i = 0; i < args_info->inputs_num; ++i)
173 free (args_info->inputs [i]);
174
175 if (args_info->inputs_num)
176 free (args_info->inputs);
177
178 clear_given (args_info);
179 }
180
181
182 static void
183 write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
184 {
185 FIX_UNUSED (values);
186 if (arg) {
187 fprintf(outfile, "%s=\"%s\"\n", opt, arg);
188 } else {
189 fprintf(outfile, "%s\n", opt);
190 }
191 }
192
193
194 int
195 cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
196 {
197 int i = 0;
198
199 if (!outfile)
200 {
201 fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
202 return EXIT_FAILURE;
203 }
204
205 if (args_info->help_given)
206 write_into_file(outfile, "help", 0, 0 );
207 if (args_info->version_given)
208 write_into_file(outfile, "version", 0, 0 );
209 if (args_info->output_given)
210 write_into_file(outfile, "output", args_info->output_orig, 0);
211
212
213 i = EXIT_SUCCESS;
214 return i;
215 }
216
217 int
218 cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
219 {
220 FILE *outfile;
221 int i = 0;
222
223 outfile = fopen(filename, "w");
224
225 if (!outfile)
226 {
227 fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
228 return EXIT_FAILURE;
229 }
230
231 i = cmdline_parser_dump(outfile, args_info);
232 fclose (outfile);
233
234 return i;
235 }
236
237 void
238 cmdline_parser_free (struct gengetopt_args_info *args_info)
239 {
240 cmdline_parser_release (args_info);
241 }
242
243 /** @brief replacement of strdup, which is not standard */
244 char *
245 gengetopt_strdup (const char *s)
246 {
247 char *result = 0;
248 if (!s)
249 return result;
250
251 result = (char*)malloc(strlen(s) + 1);
252 if (result == (char*)0)
253 return (char*)0;
254 strcpy(result, s);
255 return result;
256 }
257
258 int
259 cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
260 {
261 return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
262 }
263
264 int
265 cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
266 struct cmdline_parser_params *params)
267 {
268 int result;
269 result = cmdline_parser_internal (argc, argv, args_info, params, 0);
270
271 if (result == EXIT_FAILURE)
272 {
273 cmdline_parser_free (args_info);
274 exit (EXIT_FAILURE);
275 }
276
277 return result;
278 }
279
280 int
281 cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
282 {
283 int result;
284 struct cmdline_parser_params params;
285
286 params.override = override;
287 params.initialize = initialize;
288 params.check_required = check_required;
289 params.check_ambiguity = 0;
290 params.print_errors = 1;
291
292 result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
293
294 if (result == EXIT_FAILURE)
295 {
296 cmdline_parser_free (args_info);
297 exit (EXIT_FAILURE);
298 }
299
300 return result;
301 }
302
303 int
304 cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
305 {
306 int result = EXIT_SUCCESS;
307
308 if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
309 result = EXIT_FAILURE;
310
311 if (result == EXIT_FAILURE)
312 {
313 cmdline_parser_free (args_info);
314 exit (EXIT_FAILURE);
315 }
316
317 return result;
318 }
319
320 int
321 cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
322 {
323 int error = 0;
324 FIX_UNUSED (additional_error);
325
326 /* checks for required options */
327 if (! args_info->output_given)
328 {
329 fprintf (stderr, "%s: '--output' ('-o') option required%s\n", prog_name, (additional_error ? additional_error : ""));
330 error = 1;
331 }
332
333
334 /* checks for dependences among options */
335
336 return error;
337 }
338
339
340 static char *package_name = 0;
341
342 /**
343 * @brief updates an option
344 * @param field the generic pointer to the field to update
345 * @param orig_field the pointer to the orig field
346 * @param field_given the pointer to the number of occurrence of this option
347 * @param prev_given the pointer to the number of occurrence already seen
348 * @param value the argument for this option (if null no arg was specified)
349 * @param possible_values the possible values for this option (if specified)
350 * @param default_value the default value (in case the option only accepts fixed values)
351 * @param arg_type the type of this option
352 * @param check_ambiguity @see cmdline_parser_params.check_ambiguity
353 * @param override @see cmdline_parser_params.override
354 * @param no_free whether to free a possible previous value
355 * @param multiple_option whether this is a multiple option
356 * @param long_opt the corresponding long option
357 * @param short_opt the corresponding short option (or '-' if none)
358 * @param additional_error possible further error specification
359 */
360 static
361 int update_arg(void *field, char **orig_field,
362 unsigned int *field_given, unsigned int *prev_given,
363 char *value, const char *possible_values[],
364 const char *default_value,
365 cmdline_parser_arg_type arg_type,
366 int check_ambiguity, int override,
367 int no_free, int multiple_option,
368 const char *long_opt, char short_opt,
369 const char *additional_error)
370 {
371 char *stop_char = 0;
372 const char *val = value;
373 int found;
374 char **string_field;
375 FIX_UNUSED (field);
376
377 stop_char = 0;
378 found = 0;
379
380 if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
381 {
382 if (short_opt != '-')
383 fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
384 package_name, long_opt, short_opt,
385 (additional_error ? additional_error : ""));
386 else
387 fprintf (stderr, "%s: `--%s' option given more than once%s\n",
388 package_name, long_opt,
389 (additional_error ? additional_error : ""));
390 return 1; /* failure */
391 }
392
393 FIX_UNUSED (default_value);
394
395 if (field_given && *field_given && ! override)
396 return 0;
397 if (prev_given)
398 (*prev_given)++;
399 if (field_given)
400 (*field_given)++;
401 if (possible_values)
402 val = possible_values[found];
403
404 switch(arg_type) {
405 case ARG_STRING:
406 if (val) {
407 string_field = (char **)field;
408 if (!no_free && *string_field)
409 free (*string_field); /* free previous string */
410 *string_field = gengetopt_strdup (val);
411 }
412 break;
413 default:
414 break;
415 };
416
417
418 /* store the original value */
419 switch(arg_type) {
420 case ARG_NO:
421 break;
422 default:
423 if (value && orig_field) {
424 if (no_free) {
425 *orig_field = value;
426 } else {
427 if (*orig_field)
428 free (*orig_field); /* free previous string */
429 *orig_field = gengetopt_strdup (value);
430 }
431 }
432 };
433
434 return 0; /* OK */
435 }
436
437
438 int
439 cmdline_parser_internal (
440 int argc, char **argv, struct gengetopt_args_info *args_info,
441 struct cmdline_parser_params *params, const char *additional_error)
442 {
443 int c; /* Character of the parsed option. */
444
445 int error = 0;
446 struct gengetopt_args_info local_args_info;
447
448 int override;
449 int initialize;
450 int check_required;
451 int check_ambiguity;
452
453 package_name = argv[0];
454
455 override = params->override;
456 initialize = params->initialize;
457 check_required = params->check_required;
458 check_ambiguity = params->check_ambiguity;
459
460 if (initialize)
461 cmdline_parser_init (args_info);
462
463 cmdline_parser_init (&local_args_info);
464
465 optarg = 0;
466 optind = 0;
467 opterr = params->print_errors;
468 optopt = '?';
469
470 while (1)
471 {
472 int option_index = 0;
473
474 static struct option long_options[] = {
475 { "help", 0, NULL, 'h' },
476 { "version", 0, NULL, 'V' },
477 { "output", 1, NULL, 'o' },
478 { 0, 0, 0, 0 }
479 };
480
481 c = getopt_long (argc, argv, "hVo:", long_options, &option_index);
482
483 if (c == -1) break; /* Exit from `while (1)' loop. */
484
485 switch (c)
486 {
487 case 'h': /* Print help and exit. */
488 cmdline_parser_print_help ();
489 cmdline_parser_free (&local_args_info);
490 exit (EXIT_SUCCESS);
491
492 case 'V': /* Print version and exit. */
493 cmdline_parser_print_version ();
494 cmdline_parser_free (&local_args_info);
495 exit (EXIT_SUCCESS);
496
497 case 'o': /* Output file name. */
498
499
500 if (update_arg( (void *)&(args_info->output_arg),
501 &(args_info->output_orig), &(args_info->output_given),
502 &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
503 check_ambiguity, override, 0, 0,
504 "output", 'o',
505 additional_error))
506 goto failure;
507
508 break;
509
510 case 0: /* Long option with no short option */
511 case '?': /* Invalid option. */
512 /* `getopt_long' already printed an error message. */
513 goto failure;
514
515 default: /* bug: option not considered. */
516 fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
517 abort ();
518 } /* switch */
519 } /* while */
520
521
522
523 if (check_required)
524 {
525 error += cmdline_parser_required2 (args_info, argv[0], additional_error);
526 }
527
528 cmdline_parser_release (&local_args_info);
529
530 if ( error )
531 return (EXIT_FAILURE);
532
533 if (optind < argc)
534 {
535 int i = 0 ;
536 int found_prog_name = 0;
537 /* whether program name, i.e., argv[0], is in the remaining args
538 (this may happen with some implementations of getopt,
539 but surely not with the one included by gengetopt) */
540
541 i = optind;
542 while (i < argc)
543 if (argv[i++] == argv[0]) {
544 found_prog_name = 1;
545 break;
546 }
547 i = 0;
548
549 args_info->inputs_num = argc - optind - found_prog_name;
550 args_info->inputs =
551 (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
552 while (optind < argc)
553 if (argv[optind++] != argv[0])
554 args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
555 }
556
557 return 0;
558
559 failure:
560
561 cmdline_parser_release (&local_args_info);
562 return (EXIT_FAILURE);
563 }