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* [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |
36 |
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* [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |
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* [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |
38 |
< |
* [4] Vardeman & Gezelter, in progress (2009). |
38 |
> |
* [4] Kuang & Gezelter, J. Chem. Phys. 133, 164101 (2010). |
39 |
> |
* [4] , Stocker & Gezelter, J. Chem. Theory Comput. 7, 834 (2011). * |
40 |
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* |
40 |
– |
* |
41 |
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* randomBuilder.cpp |
42 |
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* |
43 |
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* Created by Charles F. Vardeman II on 10 Apr 2006. |
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* @author Charles F. Vardeman II |
45 |
< |
* @version $Id: randomBuilder.cpp,v 1.8 2009-11-25 20:01:58 gezelter Exp $ |
45 |
> |
* @version $Id$ |
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* |
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*/ |
48 |
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|
77 |
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|
78 |
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int main(int argc, char *argv []) { |
79 |
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80 |
– |
// register force fields |
81 |
– |
registerForceFields(); |
80 |
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registerLattice(); |
81 |
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82 |
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gengetopt_args_info args_info; |
315 |
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// Randomize a vector of ints: |
316 |
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vector<int> ids; |
318 |
< |
for (int i = 0; i < sites.size(); i++) ids.push_back(i); |
318 |
> |
for (unsigned int i = 0; i < sites.size(); i++) ids.push_back(i); |
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std::random_shuffle(ids.begin(), ids.end()); |
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321 |
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Molecule* mol; |
368 |
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|
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oldMdFile.getline(buffer, MAXLEN); |
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371 |
< |
int i = 0; |
371 |
> |
unsigned int i = 0; |
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while (!oldMdFile.eof()) { |
373 |
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|
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//correct molecule number |
375 |
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if (strstr(buffer, "nMol") != NULL) { |
376 |
< |
if(i<nMol.size()){ |
376 |
> |
if (i<nMol.size()){ |
377 |
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sprintf(buffer, "\tnMol = %i;", nMol.at(i)); |
378 |
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newMdFile << buffer << std::endl; |
379 |
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i++; |