| 1 |
|
/* |
| 2 |
< |
File autogenerated by gengetopt version 2.16 |
| 2 |
> |
File autogenerated by gengetopt version 2.22 |
| 3 |
|
generated with the following command: |
| 4 |
|
gengetopt -F HydroCmd |
| 5 |
|
|
| 21 |
|
|
| 22 |
|
#include "HydroCmd.h" |
| 23 |
|
|
| 24 |
+ |
const char *gengetopt_args_info_purpose = "\n +-----------------------------------------------------------------------+\n | ____ __ ___ ____ |\n | / __ \\____ ___ ____ / |/ // __ \\ The Open Molecular Dynamics |\n | / / / / __ \\/ _ \\/ __ \\ / /|_/ // / / / Engine (formerly OOPSE). |\n | / /_/ / /_/ / __/ / / // / / // /_/ / |\n | \\____/ .___/\\___/_/ /_//_/ /_//_____/ Copyright 2004-2009 by the |\n | /_/ University of Notre Dame. |\n | |\n | http://www.openmd.net |\n | |\n | OpenMD is an OpenScience project. All source code is available for |\n | any use whatsoever under a BSD-style license. |\n | |\n | Support OpenScience! If you use OpenMD or its source code in your |\n | research, please cite the appropriate papers when you publish your |\n | work. Good starting points are: |\n | |\n | [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |\n | [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |\n | [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |\n | [4] Vardeman & Gezelter, in progress (2009). |\n +-----------------------------------------------------------------------+"; |
| 25 |
+ |
|
| 26 |
+ |
const char *gengetopt_args_info_usage = "Usage: Hydro [OPTIONS]..."; |
| 27 |
+ |
|
| 28 |
+ |
const char *gengetopt_args_info_description = ""; |
| 29 |
+ |
|
| 30 |
+ |
const char *gengetopt_args_info_help[] = { |
| 31 |
+ |
" -h, --help Print help and exit", |
| 32 |
+ |
" -V, --version Print version and exit", |
| 33 |
+ |
" -i, --input=filename input MetaData (md) file", |
| 34 |
+ |
" -o, --output=STRING output file prefix (default=`hydro')", |
| 35 |
+ |
" --model=STRING hydrodynamics model (supports RoughShell and BeadModel)", |
| 36 |
+ |
" -b, --beads generate the beads only, hydrodynamics will be \n performed (default=off)", |
| 37 |
+ |
0 |
| 38 |
+ |
}; |
| 39 |
+ |
|
| 40 |
+ |
typedef enum {ARG_NO |
| 41 |
+ |
, ARG_FLAG |
| 42 |
+ |
, ARG_STRING |
| 43 |
+ |
} cmdline_parser_arg_type; |
| 44 |
+ |
|
| 45 |
|
static |
| 46 |
|
void clear_given (struct gengetopt_args_info *args_info); |
| 47 |
|
static |
| 48 |
|
void clear_args (struct gengetopt_args_info *args_info); |
| 49 |
|
|
| 50 |
|
static int |
| 51 |
< |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required, const char *additional_error); |
| 51 |
> |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, |
| 52 |
> |
struct cmdline_parser_params *params, const char *additional_error); |
| 53 |
|
|
| 54 |
|
static int |
| 55 |
|
cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error); |
| 81 |
|
|
| 82 |
|
} |
| 83 |
|
|
| 84 |
+ |
static |
| 85 |
+ |
void init_args_info(struct gengetopt_args_info *args_info) |
| 86 |
+ |
{ |
| 87 |
+ |
|
| 88 |
+ |
|
| 89 |
+ |
args_info->help_help = gengetopt_args_info_help[0] ; |
| 90 |
+ |
args_info->version_help = gengetopt_args_info_help[1] ; |
| 91 |
+ |
args_info->input_help = gengetopt_args_info_help[2] ; |
| 92 |
+ |
args_info->output_help = gengetopt_args_info_help[3] ; |
| 93 |
+ |
args_info->model_help = gengetopt_args_info_help[4] ; |
| 94 |
+ |
args_info->beads_help = gengetopt_args_info_help[5] ; |
| 95 |
+ |
|
| 96 |
+ |
} |
| 97 |
+ |
|
| 98 |
|
void |
| 99 |
|
cmdline_parser_print_version (void) |
| 100 |
|
{ |
| 101 |
|
printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION); |
| 102 |
|
} |
| 103 |
|
|
| 104 |
+ |
static void print_help_common(void) { |
| 105 |
+ |
cmdline_parser_print_version (); |
| 106 |
+ |
|
| 107 |
+ |
if (strlen(gengetopt_args_info_purpose) > 0) |
| 108 |
+ |
printf("\n%s\n", gengetopt_args_info_purpose); |
| 109 |
+ |
|
| 110 |
+ |
if (strlen(gengetopt_args_info_usage) > 0) |
| 111 |
+ |
printf("\n%s\n", gengetopt_args_info_usage); |
| 112 |
+ |
|
| 113 |
+ |
printf("\n"); |
| 114 |
+ |
|
| 115 |
+ |
if (strlen(gengetopt_args_info_description) > 0) |
| 116 |
+ |
printf("%s\n", gengetopt_args_info_description); |
| 117 |
+ |
} |
| 118 |
+ |
|
| 119 |
|
void |
| 120 |
|
cmdline_parser_print_help (void) |
| 121 |
|
{ |
| 122 |
< |
cmdline_parser_print_version (); |
| 123 |
< |
printf("\nUsage: Hydro [OPTIONS]...\n\n"); |
| 124 |
< |
printf("%s\n"," -h, --help Print help and exit"); |
| 125 |
< |
printf("%s\n"," -V, --version Print version and exit"); |
| 75 |
< |
printf("%s\n"," -i, --input=filename input dump file"); |
| 76 |
< |
printf("%s\n"," -o, --output=STRING output file prefix (default=`hydro')"); |
| 77 |
< |
printf("%s\n"," --model=STRING hydrodynamics model (support RoughShell and BeadModel)"); |
| 78 |
< |
printf("%s\n"," -b, --beads generate the beads only, hydrodynamics will be \n performed (default=off)"); |
| 79 |
< |
|
| 122 |
> |
int i = 0; |
| 123 |
> |
print_help_common(); |
| 124 |
> |
while (gengetopt_args_info_help[i]) |
| 125 |
> |
printf("%s\n", gengetopt_args_info_help[i++]); |
| 126 |
|
} |
| 127 |
|
|
| 128 |
|
void |
| 130 |
|
{ |
| 131 |
|
clear_given (args_info); |
| 132 |
|
clear_args (args_info); |
| 133 |
+ |
init_args_info (args_info); |
| 134 |
|
} |
| 135 |
|
|
| 136 |
+ |
void |
| 137 |
+ |
cmdline_parser_params_init(struct cmdline_parser_params *params) |
| 138 |
+ |
{ |
| 139 |
+ |
if (params) |
| 140 |
+ |
{ |
| 141 |
+ |
params->override = 0; |
| 142 |
+ |
params->initialize = 1; |
| 143 |
+ |
params->check_required = 1; |
| 144 |
+ |
params->check_ambiguity = 0; |
| 145 |
+ |
params->print_errors = 1; |
| 146 |
+ |
} |
| 147 |
+ |
} |
| 148 |
+ |
|
| 149 |
+ |
struct cmdline_parser_params * |
| 150 |
+ |
cmdline_parser_params_create(void) |
| 151 |
+ |
{ |
| 152 |
+ |
struct cmdline_parser_params *params = |
| 153 |
+ |
(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params)); |
| 154 |
+ |
cmdline_parser_params_init(params); |
| 155 |
+ |
return params; |
| 156 |
+ |
} |
| 157 |
+ |
|
| 158 |
|
static void |
| 159 |
+ |
free_string_field (char **s) |
| 160 |
+ |
{ |
| 161 |
+ |
if (*s) |
| 162 |
+ |
{ |
| 163 |
+ |
free (*s); |
| 164 |
+ |
*s = 0; |
| 165 |
+ |
} |
| 166 |
+ |
} |
| 167 |
+ |
|
| 168 |
+ |
|
| 169 |
+ |
static void |
| 170 |
|
cmdline_parser_release (struct gengetopt_args_info *args_info) |
| 171 |
|
{ |
| 172 |
+ |
|
| 173 |
+ |
free_string_field (&(args_info->input_arg)); |
| 174 |
+ |
free_string_field (&(args_info->input_orig)); |
| 175 |
+ |
free_string_field (&(args_info->output_arg)); |
| 176 |
+ |
free_string_field (&(args_info->output_orig)); |
| 177 |
+ |
free_string_field (&(args_info->model_arg)); |
| 178 |
+ |
free_string_field (&(args_info->model_orig)); |
| 179 |
|
|
| 180 |
< |
if (args_info->input_arg) |
| 180 |
> |
|
| 181 |
> |
|
| 182 |
> |
clear_given (args_info); |
| 183 |
> |
} |
| 184 |
> |
|
| 185 |
> |
|
| 186 |
> |
static void |
| 187 |
> |
write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[]) |
| 188 |
> |
{ |
| 189 |
> |
if (arg) { |
| 190 |
> |
fprintf(outfile, "%s=\"%s\"\n", opt, arg); |
| 191 |
> |
} else { |
| 192 |
> |
fprintf(outfile, "%s\n", opt); |
| 193 |
> |
} |
| 194 |
> |
} |
| 195 |
> |
|
| 196 |
> |
|
| 197 |
> |
int |
| 198 |
> |
cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info) |
| 199 |
> |
{ |
| 200 |
> |
int i = 0; |
| 201 |
> |
|
| 202 |
> |
if (!outfile) |
| 203 |
|
{ |
| 204 |
< |
free (args_info->input_arg); /* free previous argument */ |
| 205 |
< |
args_info->input_arg = 0; |
| 204 |
> |
fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE); |
| 205 |
> |
return EXIT_FAILURE; |
| 206 |
|
} |
| 207 |
< |
if (args_info->input_orig) |
| 208 |
< |
{ |
| 209 |
< |
free (args_info->input_orig); /* free previous argument */ |
| 210 |
< |
args_info->input_orig = 0; |
| 211 |
< |
} |
| 212 |
< |
if (args_info->output_arg) |
| 213 |
< |
{ |
| 214 |
< |
free (args_info->output_arg); /* free previous argument */ |
| 215 |
< |
args_info->output_arg = 0; |
| 216 |
< |
} |
| 217 |
< |
if (args_info->output_orig) |
| 218 |
< |
{ |
| 219 |
< |
free (args_info->output_orig); /* free previous argument */ |
| 111 |
< |
args_info->output_orig = 0; |
| 112 |
< |
} |
| 113 |
< |
if (args_info->model_arg) |
| 114 |
< |
{ |
| 115 |
< |
free (args_info->model_arg); /* free previous argument */ |
| 116 |
< |
args_info->model_arg = 0; |
| 117 |
< |
} |
| 118 |
< |
if (args_info->model_orig) |
| 119 |
< |
{ |
| 120 |
< |
free (args_info->model_orig); /* free previous argument */ |
| 121 |
< |
args_info->model_orig = 0; |
| 122 |
< |
} |
| 207 |
> |
|
| 208 |
> |
if (args_info->help_given) |
| 209 |
> |
write_into_file(outfile, "help", 0, 0 ); |
| 210 |
> |
if (args_info->version_given) |
| 211 |
> |
write_into_file(outfile, "version", 0, 0 ); |
| 212 |
> |
if (args_info->input_given) |
| 213 |
> |
write_into_file(outfile, "input", args_info->input_orig, 0); |
| 214 |
> |
if (args_info->output_given) |
| 215 |
> |
write_into_file(outfile, "output", args_info->output_orig, 0); |
| 216 |
> |
if (args_info->model_given) |
| 217 |
> |
write_into_file(outfile, "model", args_info->model_orig, 0); |
| 218 |
> |
if (args_info->beads_given) |
| 219 |
> |
write_into_file(outfile, "beads", 0, 0 ); |
| 220 |
|
|
| 221 |
< |
clear_given (args_info); |
| 221 |
> |
|
| 222 |
> |
i = EXIT_SUCCESS; |
| 223 |
> |
return i; |
| 224 |
|
} |
| 225 |
|
|
| 226 |
|
int |
| 237 |
|
return EXIT_FAILURE; |
| 238 |
|
} |
| 239 |
|
|
| 240 |
< |
if (args_info->help_given) { |
| 142 |
< |
fprintf(outfile, "%s\n", "help"); |
| 143 |
< |
} |
| 144 |
< |
if (args_info->version_given) { |
| 145 |
< |
fprintf(outfile, "%s\n", "version"); |
| 146 |
< |
} |
| 147 |
< |
if (args_info->input_given) { |
| 148 |
< |
if (args_info->input_orig) { |
| 149 |
< |
fprintf(outfile, "%s=\"%s\"\n", "input", args_info->input_orig); |
| 150 |
< |
} else { |
| 151 |
< |
fprintf(outfile, "%s\n", "input"); |
| 152 |
< |
} |
| 153 |
< |
} |
| 154 |
< |
if (args_info->output_given) { |
| 155 |
< |
if (args_info->output_orig) { |
| 156 |
< |
fprintf(outfile, "%s=\"%s\"\n", "output", args_info->output_orig); |
| 157 |
< |
} else { |
| 158 |
< |
fprintf(outfile, "%s\n", "output"); |
| 159 |
< |
} |
| 160 |
< |
} |
| 161 |
< |
if (args_info->model_given) { |
| 162 |
< |
if (args_info->model_orig) { |
| 163 |
< |
fprintf(outfile, "%s=\"%s\"\n", "model", args_info->model_orig); |
| 164 |
< |
} else { |
| 165 |
< |
fprintf(outfile, "%s\n", "model"); |
| 166 |
< |
} |
| 167 |
< |
} |
| 168 |
< |
if (args_info->beads_given) { |
| 169 |
< |
fprintf(outfile, "%s\n", "beads"); |
| 170 |
< |
} |
| 171 |
< |
|
| 240 |
> |
i = cmdline_parser_dump(outfile, args_info); |
| 241 |
|
fclose (outfile); |
| 242 |
|
|
| 174 |
– |
i = EXIT_SUCCESS; |
| 243 |
|
return i; |
| 244 |
|
} |
| 245 |
|
|
| 249 |
|
cmdline_parser_release (args_info); |
| 250 |
|
} |
| 251 |
|
|
| 252 |
< |
|
| 185 |
< |
/* gengetopt_strdup() */ |
| 186 |
< |
/* strdup.c replacement of strdup, which is not standard */ |
| 252 |
> |
/** @brief replacement of strdup, which is not standard */ |
| 253 |
|
char * |
| 254 |
|
gengetopt_strdup (const char *s) |
| 255 |
|
{ |
| 271 |
|
} |
| 272 |
|
|
| 273 |
|
int |
| 274 |
+ |
cmdline_parser_ext (int argc, char * const *argv, struct gengetopt_args_info *args_info, |
| 275 |
+ |
struct cmdline_parser_params *params) |
| 276 |
+ |
{ |
| 277 |
+ |
int result; |
| 278 |
+ |
result = cmdline_parser_internal (argc, argv, args_info, params, NULL); |
| 279 |
+ |
|
| 280 |
+ |
if (result == EXIT_FAILURE) |
| 281 |
+ |
{ |
| 282 |
+ |
cmdline_parser_free (args_info); |
| 283 |
+ |
exit (EXIT_FAILURE); |
| 284 |
+ |
} |
| 285 |
+ |
|
| 286 |
+ |
return result; |
| 287 |
+ |
} |
| 288 |
+ |
|
| 289 |
+ |
int |
| 290 |
|
cmdline_parser2 (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required) |
| 291 |
|
{ |
| 292 |
|
int result; |
| 293 |
+ |
struct cmdline_parser_params params; |
| 294 |
+ |
|
| 295 |
+ |
params.override = override; |
| 296 |
+ |
params.initialize = initialize; |
| 297 |
+ |
params.check_required = check_required; |
| 298 |
+ |
params.check_ambiguity = 0; |
| 299 |
+ |
params.print_errors = 1; |
| 300 |
|
|
| 301 |
< |
result = cmdline_parser_internal (argc, argv, args_info, override, initialize, check_required, NULL); |
| 301 |
> |
result = cmdline_parser_internal (argc, argv, args_info, ¶ms, NULL); |
| 302 |
|
|
| 303 |
|
if (result == EXIT_FAILURE) |
| 304 |
|
{ |
| 331 |
|
{ |
| 332 |
|
int error = 0; |
| 333 |
|
|
| 334 |
+ |
/* checks for required options */ |
| 335 |
|
if (! args_info->input_given) |
| 336 |
|
{ |
| 337 |
|
fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : "")); |
| 338 |
|
error = 1; |
| 339 |
|
} |
| 340 |
+ |
|
| 341 |
|
if (! args_info->model_given) |
| 342 |
|
{ |
| 343 |
|
fprintf (stderr, "%s: '--model' option required%s\n", prog_name, (additional_error ? additional_error : "")); |
| 344 |
|
error = 1; |
| 345 |
|
} |
| 346 |
+ |
|
| 347 |
+ |
|
| 348 |
+ |
/* checks for dependences among options */ |
| 349 |
|
|
| 350 |
|
return error; |
| 351 |
|
} |
| 352 |
|
|
| 353 |
+ |
|
| 354 |
+ |
static char *package_name = 0; |
| 355 |
+ |
|
| 356 |
+ |
/** |
| 357 |
+ |
* @brief updates an option |
| 358 |
+ |
* @param field the generic pointer to the field to update |
| 359 |
+ |
* @param orig_field the pointer to the orig field |
| 360 |
+ |
* @param field_given the pointer to the number of occurrence of this option |
| 361 |
+ |
* @param prev_given the pointer to the number of occurrence already seen |
| 362 |
+ |
* @param value the argument for this option (if null no arg was specified) |
| 363 |
+ |
* @param possible_values the possible values for this option (if specified) |
| 364 |
+ |
* @param default_value the default value (in case the option only accepts fixed values) |
| 365 |
+ |
* @param arg_type the type of this option |
| 366 |
+ |
* @param check_ambiguity @see cmdline_parser_params.check_ambiguity |
| 367 |
+ |
* @param override @see cmdline_parser_params.override |
| 368 |
+ |
* @param no_free whether to free a possible previous value |
| 369 |
+ |
* @param multiple_option whether this is a multiple option |
| 370 |
+ |
* @param long_opt the corresponding long option |
| 371 |
+ |
* @param short_opt the corresponding short option (or '-' if none) |
| 372 |
+ |
* @param additional_error possible further error specification |
| 373 |
+ |
*/ |
| 374 |
+ |
static |
| 375 |
+ |
int update_arg(void *field, char **orig_field, |
| 376 |
+ |
unsigned int *field_given, unsigned int *prev_given, |
| 377 |
+ |
char *value, char *possible_values[], const char *default_value, |
| 378 |
+ |
cmdline_parser_arg_type arg_type, |
| 379 |
+ |
int check_ambiguity, int override, |
| 380 |
+ |
int no_free, int multiple_option, |
| 381 |
+ |
const char *long_opt, char short_opt, |
| 382 |
+ |
const char *additional_error) |
| 383 |
+ |
{ |
| 384 |
+ |
char *stop_char = 0; |
| 385 |
+ |
const char *val = value; |
| 386 |
+ |
int found; |
| 387 |
+ |
char **string_field; |
| 388 |
+ |
|
| 389 |
+ |
stop_char = 0; |
| 390 |
+ |
found = 0; |
| 391 |
+ |
|
| 392 |
+ |
if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given))) |
| 393 |
+ |
{ |
| 394 |
+ |
if (short_opt != '-') |
| 395 |
+ |
fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n", |
| 396 |
+ |
package_name, long_opt, short_opt, |
| 397 |
+ |
(additional_error ? additional_error : "")); |
| 398 |
+ |
else |
| 399 |
+ |
fprintf (stderr, "%s: `--%s' option given more than once%s\n", |
| 400 |
+ |
package_name, long_opt, |
| 401 |
+ |
(additional_error ? additional_error : "")); |
| 402 |
+ |
return 1; /* failure */ |
| 403 |
+ |
} |
| 404 |
+ |
|
| 405 |
+ |
|
| 406 |
+ |
if (field_given && *field_given && ! override) |
| 407 |
+ |
return 0; |
| 408 |
+ |
if (prev_given) |
| 409 |
+ |
(*prev_given)++; |
| 410 |
+ |
if (field_given) |
| 411 |
+ |
(*field_given)++; |
| 412 |
+ |
if (possible_values) |
| 413 |
+ |
val = possible_values[found]; |
| 414 |
+ |
|
| 415 |
+ |
switch(arg_type) { |
| 416 |
+ |
case ARG_FLAG: |
| 417 |
+ |
*((int *)field) = !*((int *)field); |
| 418 |
+ |
break; |
| 419 |
+ |
case ARG_STRING: |
| 420 |
+ |
if (val) { |
| 421 |
+ |
string_field = (char **)field; |
| 422 |
+ |
if (!no_free && *string_field) |
| 423 |
+ |
free (*string_field); /* free previous string */ |
| 424 |
+ |
*string_field = gengetopt_strdup (val); |
| 425 |
+ |
} |
| 426 |
+ |
break; |
| 427 |
+ |
default: |
| 428 |
+ |
break; |
| 429 |
+ |
}; |
| 430 |
+ |
|
| 431 |
+ |
|
| 432 |
+ |
/* store the original value */ |
| 433 |
+ |
switch(arg_type) { |
| 434 |
+ |
case ARG_NO: |
| 435 |
+ |
case ARG_FLAG: |
| 436 |
+ |
break; |
| 437 |
+ |
default: |
| 438 |
+ |
if (value && orig_field) { |
| 439 |
+ |
if (no_free) { |
| 440 |
+ |
*orig_field = value; |
| 441 |
+ |
} else { |
| 442 |
+ |
if (*orig_field) |
| 443 |
+ |
free (*orig_field); /* free previous string */ |
| 444 |
+ |
*orig_field = gengetopt_strdup (value); |
| 445 |
+ |
} |
| 446 |
+ |
} |
| 447 |
+ |
}; |
| 448 |
+ |
|
| 449 |
+ |
return 0; /* OK */ |
| 450 |
+ |
} |
| 451 |
+ |
|
| 452 |
+ |
|
| 453 |
|
int |
| 454 |
< |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required, const char *additional_error) |
| 454 |
> |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, |
| 455 |
> |
struct cmdline_parser_params *params, const char *additional_error) |
| 456 |
|
{ |
| 457 |
|
int c; /* Character of the parsed option. */ |
| 458 |
|
|
| 459 |
|
int error = 0; |
| 460 |
|
struct gengetopt_args_info local_args_info; |
| 461 |
+ |
|
| 462 |
+ |
int override; |
| 463 |
+ |
int initialize; |
| 464 |
+ |
int check_required; |
| 465 |
+ |
int check_ambiguity; |
| 466 |
+ |
|
| 467 |
+ |
package_name = argv[0]; |
| 468 |
+ |
|
| 469 |
+ |
override = params->override; |
| 470 |
+ |
initialize = params->initialize; |
| 471 |
+ |
check_required = params->check_required; |
| 472 |
+ |
check_ambiguity = params->check_ambiguity; |
| 473 |
|
|
| 474 |
|
if (initialize) |
| 475 |
|
cmdline_parser_init (args_info); |
| 476 |
|
|
| 477 |
|
cmdline_parser_init (&local_args_info); |
| 271 |
– |
printf("\n%s\n", "\n+----------------------------------------------------------------------+ \n| ____ ____ ____ _____ ______ The OpenSource, Object-oriented | \n| / __ \\/ __ \\/ __ \\/ ___// ____/ Parallel Simulation Engine. | \n| / / / / / / / /_/ /\\__ \\/ __/ | \n| / /_/ / /_/ / ____/___/ / /___ Copyright 2004-2006 by the | \n| \\____/\\____/_/ /____/_____/ University of Notre Dame. | \n| | \n| http://www.oopse.org |\n| | \n| OOPSE is an OpenScience project. All source code is available for |\n| any use subject to only one condition: | \n| |\n| Any published work resulting from the use of this code must cite the | \n| following paper: M. A. Meineke, C. F. Vardeman II, T. Lin, | \n| C. J. Fennell, and J. D. Gezelter, | \n| J. Comput. Chem. 26, pp. 252-271 (2005). | \n+----------------------------------------------------------------------+"); |
| 478 |
|
|
| 479 |
|
optarg = 0; |
| 480 |
|
optind = 0; |
| 481 |
< |
opterr = 1; |
| 481 |
> |
opterr = params->print_errors; |
| 482 |
|
optopt = '?'; |
| 483 |
|
|
| 484 |
|
while (1) |
| 485 |
|
{ |
| 486 |
|
int option_index = 0; |
| 281 |
– |
char *stop_char; |
| 487 |
|
|
| 488 |
|
static struct option long_options[] = { |
| 489 |
|
{ "help", 0, NULL, 'h' }, |
| 495 |
|
{ NULL, 0, NULL, 0 } |
| 496 |
|
}; |
| 497 |
|
|
| 293 |
– |
stop_char = 0; |
| 498 |
|
c = getopt_long (argc, argv, "hVi:o:b", long_options, &option_index); |
| 499 |
|
|
| 500 |
|
if (c == -1) break; /* Exit from `while (1)' loop. */ |
| 511 |
|
cmdline_parser_free (&local_args_info); |
| 512 |
|
exit (EXIT_SUCCESS); |
| 513 |
|
|
| 514 |
< |
case 'i': /* input dump file. */ |
| 515 |
< |
if (local_args_info.input_given) |
| 516 |
< |
{ |
| 517 |
< |
fprintf (stderr, "%s: `--input' (`-i') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 518 |
< |
goto failure; |
| 519 |
< |
} |
| 520 |
< |
if (args_info->input_given && ! override) |
| 521 |
< |
continue; |
| 522 |
< |
local_args_info.input_given = 1; |
| 523 |
< |
args_info->input_given = 1; |
| 524 |
< |
if (args_info->input_arg) |
| 321 |
< |
free (args_info->input_arg); /* free previous string */ |
| 322 |
< |
args_info->input_arg = gengetopt_strdup (optarg); |
| 323 |
< |
if (args_info->input_orig) |
| 324 |
< |
free (args_info->input_orig); /* free previous string */ |
| 325 |
< |
args_info->input_orig = gengetopt_strdup (optarg); |
| 514 |
> |
case 'i': /* input MetaData (md) file. */ |
| 515 |
> |
|
| 516 |
> |
|
| 517 |
> |
if (update_arg( (void *)&(args_info->input_arg), |
| 518 |
> |
&(args_info->input_orig), &(args_info->input_given), |
| 519 |
> |
&(local_args_info.input_given), optarg, 0, 0, ARG_STRING, |
| 520 |
> |
check_ambiguity, override, 0, 0, |
| 521 |
> |
"input", 'i', |
| 522 |
> |
additional_error)) |
| 523 |
> |
goto failure; |
| 524 |
> |
|
| 525 |
|
break; |
| 327 |
– |
|
| 526 |
|
case 'o': /* output file prefix. */ |
| 527 |
< |
if (local_args_info.output_given) |
| 528 |
< |
{ |
| 529 |
< |
fprintf (stderr, "%s: `--output' (`-o') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 530 |
< |
goto failure; |
| 531 |
< |
} |
| 532 |
< |
if (args_info->output_given && ! override) |
| 533 |
< |
continue; |
| 534 |
< |
local_args_info.output_given = 1; |
| 535 |
< |
args_info->output_given = 1; |
| 536 |
< |
if (args_info->output_arg) |
| 339 |
< |
free (args_info->output_arg); /* free previous string */ |
| 340 |
< |
args_info->output_arg = gengetopt_strdup (optarg); |
| 341 |
< |
if (args_info->output_orig) |
| 342 |
< |
free (args_info->output_orig); /* free previous string */ |
| 343 |
< |
args_info->output_orig = gengetopt_strdup (optarg); |
| 527 |
> |
|
| 528 |
> |
|
| 529 |
> |
if (update_arg( (void *)&(args_info->output_arg), |
| 530 |
> |
&(args_info->output_orig), &(args_info->output_given), |
| 531 |
> |
&(local_args_info.output_given), optarg, 0, "hydro", ARG_STRING, |
| 532 |
> |
check_ambiguity, override, 0, 0, |
| 533 |
> |
"output", 'o', |
| 534 |
> |
additional_error)) |
| 535 |
> |
goto failure; |
| 536 |
> |
|
| 537 |
|
break; |
| 345 |
– |
|
| 538 |
|
case 'b': /* generate the beads only, hydrodynamics will be performed. */ |
| 539 |
< |
if (local_args_info.beads_given) |
| 540 |
< |
{ |
| 541 |
< |
fprintf (stderr, "%s: `--beads' (`-b') option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 542 |
< |
goto failure; |
| 543 |
< |
} |
| 544 |
< |
if (args_info->beads_given && ! override) |
| 545 |
< |
continue; |
| 546 |
< |
local_args_info.beads_given = 1; |
| 355 |
< |
args_info->beads_given = 1; |
| 356 |
< |
args_info->beads_flag = !(args_info->beads_flag); |
| 539 |
> |
|
| 540 |
> |
|
| 541 |
> |
if (update_arg((void *)&(args_info->beads_flag), 0, &(args_info->beads_given), |
| 542 |
> |
&(local_args_info.beads_given), optarg, 0, 0, ARG_FLAG, |
| 543 |
> |
check_ambiguity, override, 1, 0, "beads", 'b', |
| 544 |
> |
additional_error)) |
| 545 |
> |
goto failure; |
| 546 |
> |
|
| 547 |
|
break; |
| 548 |
|
|
| 359 |
– |
|
| 549 |
|
case 0: /* Long option with no short option */ |
| 550 |
< |
/* hydrodynamics model (support RoughShell and BeadModel). */ |
| 550 |
> |
/* hydrodynamics model (supports RoughShell and BeadModel). */ |
| 551 |
|
if (strcmp (long_options[option_index].name, "model") == 0) |
| 552 |
|
{ |
| 553 |
< |
if (local_args_info.model_given) |
| 554 |
< |
{ |
| 555 |
< |
fprintf (stderr, "%s: `--model' option given more than once%s\n", argv[0], (additional_error ? additional_error : "")); |
| 556 |
< |
goto failure; |
| 557 |
< |
} |
| 558 |
< |
if (args_info->model_given && ! override) |
| 559 |
< |
continue; |
| 560 |
< |
local_args_info.model_given = 1; |
| 561 |
< |
args_info->model_given = 1; |
| 562 |
< |
if (args_info->model_arg) |
| 374 |
< |
free (args_info->model_arg); /* free previous string */ |
| 375 |
< |
args_info->model_arg = gengetopt_strdup (optarg); |
| 376 |
< |
if (args_info->model_orig) |
| 377 |
< |
free (args_info->model_orig); /* free previous string */ |
| 378 |
< |
args_info->model_orig = gengetopt_strdup (optarg); |
| 553 |
> |
|
| 554 |
> |
|
| 555 |
> |
if (update_arg( (void *)&(args_info->model_arg), |
| 556 |
> |
&(args_info->model_orig), &(args_info->model_given), |
| 557 |
> |
&(local_args_info.model_given), optarg, 0, 0, ARG_STRING, |
| 558 |
> |
check_ambiguity, override, 0, 0, |
| 559 |
> |
"model", '-', |
| 560 |
> |
additional_error)) |
| 561 |
> |
goto failure; |
| 562 |
> |
|
| 563 |
|
} |
| 564 |
|
|
| 565 |
|
break; |
| 583 |
|
cmdline_parser_release (&local_args_info); |
| 584 |
|
|
| 585 |
|
if ( error ) |
| 586 |
< |
goto failure; |
| 586 |
> |
return (EXIT_FAILURE); |
| 587 |
|
|
| 588 |
|
return 0; |
| 589 |
|
|
| 590 |
|
failure: |
| 591 |
|
|
| 408 |
– |
cmdline_parser_print_help (); |
| 592 |
|
cmdline_parser_release (&local_args_info); |
| 593 |
|
return (EXIT_FAILURE); |
| 594 |
|
} |
