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/* |
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File autogenerated by gengetopt version 2.11 |
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File autogenerated by gengetopt version 2.22 |
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generated with the following command: |
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/home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F HydroCmd |
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gengetopt -F HydroCmd |
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|
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The developers of gengetopt consider the fixed text that goes in all |
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gengetopt output files to be in the public domain: |
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we make no copyright claims on it. |
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*/ |
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|
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|
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#include <stdio.h> |
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#include <stdlib.h> |
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#include <string.h> |
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|
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/* If we use autoconf. */ |
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#ifdef HAVE_CONFIG_H |
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#include "config.h" |
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#endif |
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|
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#include <stdio.h> |
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#include <stdlib.h> |
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#include <string.h> |
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|
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#include "getopt.h" |
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|
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#include "HydroCmd.h" |
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|
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const char *gengetopt_args_info_purpose = "\n +-----------------------------------------------------------------------+\n | ____ __ ___ ____ |\n | / __ \\____ ___ ____ / |/ // __ \\ The Open Molecular Dynamics |\n | / / / / __ \\/ _ \\/ __ \\ / /|_/ // / / / Engine (formerly OOPSE). |\n | / /_/ / /_/ / __/ / / // / / // /_/ / |\n | \\____/ .___/\\___/_/ /_//_/ /_//_____/ Copyright 2004-2009 by the |\n | /_/ University of Notre Dame. |\n | |\n | http://www.openmd.net |\n | |\n | OpenMD is an OpenScience project. All source code is available for |\n | any use whatsoever under a BSD-style license. |\n | |\n | Support OpenScience! If you use OpenMD or its source code in your |\n | research, please cite the appropriate papers when you publish your |\n | work. Good starting points are: |\n | |\n | [1] Meineke, et al., J. Comp. Chem. 26, 252-271 (2005). |\n | [2] Fennell & Gezelter, J. Chem. Phys. 124, 234104 (2006). |\n | [3] Sun, Lin & Gezelter, J. Chem. Phys. 128, 24107 (2008). |\n | [4] Vardeman & Gezelter, in progress (2009). |\n +-----------------------------------------------------------------------+"; |
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|
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const char *gengetopt_args_info_usage = "Usage: Hydro [OPTIONS]..."; |
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|
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const char *gengetopt_args_info_description = ""; |
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|
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const char *gengetopt_args_info_help[] = { |
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" -h, --help Print help and exit", |
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" -V, --version Print version and exit", |
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" -i, --input=filename input MetaData (md) file", |
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" -o, --output=STRING output file prefix (default=`hydro')", |
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" --model=STRING hydrodynamics model (supports RoughShell and BeadModel)", |
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" -b, --beads generate the beads only, hydrodynamics will be \n performed (default=off)", |
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0 |
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}; |
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|
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typedef enum {ARG_NO |
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, ARG_FLAG |
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, ARG_STRING |
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} cmdline_parser_arg_type; |
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|
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static |
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void clear_given (struct gengetopt_args_info *args_info); |
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static |
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void clear_args (struct gengetopt_args_info *args_info); |
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|
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static int |
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cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, |
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struct cmdline_parser_params *params, const char *additional_error); |
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|
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static int |
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cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error); |
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|
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static char * |
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gengetopt_strdup (const char *s); |
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|
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static |
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void clear_given (struct gengetopt_args_info *args_info) |
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{ |
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args_info->help_given = 0 ; |
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args_info->version_given = 0 ; |
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args_info->input_given = 0 ; |
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args_info->output_given = 0 ; |
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args_info->model_given = 0 ; |
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args_info->beads_given = 0 ; |
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} |
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|
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static |
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void clear_args (struct gengetopt_args_info *args_info) |
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{ |
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args_info->input_arg = NULL; |
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args_info->input_orig = NULL; |
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args_info->output_arg = gengetopt_strdup ("hydro"); |
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args_info->output_orig = NULL; |
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args_info->model_arg = NULL; |
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args_info->model_orig = NULL; |
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args_info->beads_flag = 0; |
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|
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} |
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|
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static |
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void init_args_info(struct gengetopt_args_info *args_info) |
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{ |
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|
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|
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args_info->help_help = gengetopt_args_info_help[0] ; |
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args_info->version_help = gengetopt_args_info_help[1] ; |
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args_info->input_help = gengetopt_args_info_help[2] ; |
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args_info->output_help = gengetopt_args_info_help[3] ; |
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args_info->model_help = gengetopt_args_info_help[4] ; |
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args_info->beads_help = gengetopt_args_info_help[5] ; |
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|
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} |
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|
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void |
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cmdline_parser_print_version (void) |
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{ |
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printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION); |
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} |
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|
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static void print_help_common(void) { |
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cmdline_parser_print_version (); |
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|
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if (strlen(gengetopt_args_info_purpose) > 0) |
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printf("\n%s\n", gengetopt_args_info_purpose); |
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|
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if (strlen(gengetopt_args_info_usage) > 0) |
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printf("\n%s\n", gengetopt_args_info_usage); |
112 |
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|
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printf("\n"); |
114 |
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|
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if (strlen(gengetopt_args_info_description) > 0) |
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printf("%s\n", gengetopt_args_info_description); |
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} |
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|
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void |
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cmdline_parser_print_help (void) |
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{ |
122 |
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cmdline_parser_print_version (); |
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printf("\n" |
124 |
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"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE); |
125 |
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printf("\n"); |
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printf(" -h, --help Print help and exit\n"); |
39 |
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printf(" -V, --version Print version and exit\n"); |
40 |
< |
printf(" -i, --input=filename input dump file\n"); |
41 |
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printf(" -o, --output=STRING output file prefix (default=`hydro')\n"); |
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printf(" --viscosity=DOUBLE viscosity of solvent\n"); |
43 |
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printf(" --temperature=DOUBLE temperature of the system\n"); |
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printf(" --sigma=DOUBLE diameter of beads(use with rough shell model)\n"); |
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printf(" --model=STRING hydrodynamics model (support RoughShell and \n BeadModel)\n"); |
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int i = 0; |
123 |
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print_help_common(); |
124 |
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while (gengetopt_args_info_help[i]) |
125 |
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printf("%s\n", gengetopt_args_info_help[i++]); |
126 |
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} |
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|
|
128 |
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void |
129 |
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cmdline_parser_init (struct gengetopt_args_info *args_info) |
130 |
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{ |
131 |
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clear_given (args_info); |
132 |
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clear_args (args_info); |
133 |
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init_args_info (args_info); |
134 |
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} |
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|
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static char *gengetopt_strdup (const char *s); |
136 |
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void |
137 |
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cmdline_parser_params_init(struct cmdline_parser_params *params) |
138 |
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{ |
139 |
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if (params) |
140 |
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{ |
141 |
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params->override = 0; |
142 |
> |
params->initialize = 1; |
143 |
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params->check_required = 1; |
144 |
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params->check_ambiguity = 0; |
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params->print_errors = 1; |
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} |
147 |
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} |
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|
|
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/* gengetopt_strdup() */ |
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/* strdup.c replacement of strdup, which is not standard */ |
149 |
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struct cmdline_parser_params * |
150 |
> |
cmdline_parser_params_create(void) |
151 |
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{ |
152 |
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struct cmdline_parser_params *params = |
153 |
> |
(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params)); |
154 |
> |
cmdline_parser_params_init(params); |
155 |
> |
return params; |
156 |
> |
} |
157 |
> |
|
158 |
> |
static void |
159 |
> |
free_string_field (char **s) |
160 |
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{ |
161 |
> |
if (*s) |
162 |
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{ |
163 |
> |
free (*s); |
164 |
> |
*s = 0; |
165 |
> |
} |
166 |
> |
} |
167 |
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|
168 |
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|
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static void |
170 |
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cmdline_parser_release (struct gengetopt_args_info *args_info) |
171 |
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{ |
172 |
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|
173 |
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free_string_field (&(args_info->input_arg)); |
174 |
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free_string_field (&(args_info->input_orig)); |
175 |
> |
free_string_field (&(args_info->output_arg)); |
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> |
free_string_field (&(args_info->output_orig)); |
177 |
> |
free_string_field (&(args_info->model_arg)); |
178 |
> |
free_string_field (&(args_info->model_orig)); |
179 |
> |
|
180 |
> |
|
181 |
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|
182 |
> |
clear_given (args_info); |
183 |
> |
} |
184 |
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|
185 |
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|
186 |
> |
static void |
187 |
> |
write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[]) |
188 |
> |
{ |
189 |
> |
if (arg) { |
190 |
> |
fprintf(outfile, "%s=\"%s\"\n", opt, arg); |
191 |
> |
} else { |
192 |
> |
fprintf(outfile, "%s\n", opt); |
193 |
> |
} |
194 |
> |
} |
195 |
> |
|
196 |
> |
|
197 |
> |
int |
198 |
> |
cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info) |
199 |
> |
{ |
200 |
> |
int i = 0; |
201 |
> |
|
202 |
> |
if (!outfile) |
203 |
> |
{ |
204 |
> |
fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE); |
205 |
> |
return EXIT_FAILURE; |
206 |
> |
} |
207 |
> |
|
208 |
> |
if (args_info->help_given) |
209 |
> |
write_into_file(outfile, "help", 0, 0 ); |
210 |
> |
if (args_info->version_given) |
211 |
> |
write_into_file(outfile, "version", 0, 0 ); |
212 |
> |
if (args_info->input_given) |
213 |
> |
write_into_file(outfile, "input", args_info->input_orig, 0); |
214 |
> |
if (args_info->output_given) |
215 |
> |
write_into_file(outfile, "output", args_info->output_orig, 0); |
216 |
> |
if (args_info->model_given) |
217 |
> |
write_into_file(outfile, "model", args_info->model_orig, 0); |
218 |
> |
if (args_info->beads_given) |
219 |
> |
write_into_file(outfile, "beads", 0, 0 ); |
220 |
> |
|
221 |
> |
|
222 |
> |
i = EXIT_SUCCESS; |
223 |
> |
return i; |
224 |
> |
} |
225 |
> |
|
226 |
> |
int |
227 |
> |
cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info) |
228 |
> |
{ |
229 |
> |
FILE *outfile; |
230 |
> |
int i = 0; |
231 |
> |
|
232 |
> |
outfile = fopen(filename, "w"); |
233 |
> |
|
234 |
> |
if (!outfile) |
235 |
> |
{ |
236 |
> |
fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename); |
237 |
> |
return EXIT_FAILURE; |
238 |
> |
} |
239 |
> |
|
240 |
> |
i = cmdline_parser_dump(outfile, args_info); |
241 |
> |
fclose (outfile); |
242 |
> |
|
243 |
> |
return i; |
244 |
> |
} |
245 |
> |
|
246 |
> |
void |
247 |
> |
cmdline_parser_free (struct gengetopt_args_info *args_info) |
248 |
> |
{ |
249 |
> |
cmdline_parser_release (args_info); |
250 |
> |
} |
251 |
> |
|
252 |
> |
/** @brief replacement of strdup, which is not standard */ |
253 |
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char * |
254 |
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gengetopt_strdup (const char *s) |
255 |
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{ |
256 |
< |
char *result = (char*)malloc(strlen(s) + 1); |
256 |
> |
char *result = NULL; |
257 |
> |
if (!s) |
258 |
> |
return result; |
259 |
> |
|
260 |
> |
result = (char*)malloc(strlen(s) + 1); |
261 |
|
if (result == (char*)0) |
262 |
|
return (char*)0; |
263 |
|
strcpy(result, s); |
267 |
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int |
268 |
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cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info) |
269 |
|
{ |
270 |
< |
int c; /* Character of the parsed option. */ |
271 |
< |
int missing_required_options = 0; |
270 |
> |
return cmdline_parser2 (argc, argv, args_info, 0, 1, 1); |
271 |
> |
} |
272 |
|
|
273 |
< |
args_info->help_given = 0 ; |
274 |
< |
args_info->version_given = 0 ; |
275 |
< |
args_info->input_given = 0 ; |
276 |
< |
args_info->output_given = 0 ; |
277 |
< |
args_info->viscosity_given = 0 ; |
278 |
< |
args_info->temperature_given = 0 ; |
279 |
< |
args_info->sigma_given = 0 ; |
280 |
< |
args_info->model_given = 0 ; |
281 |
< |
#define clear_args() { \ |
282 |
< |
args_info->input_arg = NULL; \ |
283 |
< |
args_info->output_arg = gengetopt_strdup("hydro") ;\ |
284 |
< |
args_info->model_arg = NULL; \ |
273 |
> |
int |
274 |
> |
cmdline_parser_ext (int argc, char * const *argv, struct gengetopt_args_info *args_info, |
275 |
> |
struct cmdline_parser_params *params) |
276 |
> |
{ |
277 |
> |
int result; |
278 |
> |
result = cmdline_parser_internal (argc, argv, args_info, params, NULL); |
279 |
> |
|
280 |
> |
if (result == EXIT_FAILURE) |
281 |
> |
{ |
282 |
> |
cmdline_parser_free (args_info); |
283 |
> |
exit (EXIT_FAILURE); |
284 |
> |
} |
285 |
> |
|
286 |
> |
return result; |
287 |
|
} |
288 |
|
|
289 |
< |
clear_args(); |
289 |
> |
int |
290 |
> |
cmdline_parser2 (int argc, char * const *argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required) |
291 |
> |
{ |
292 |
> |
int result; |
293 |
> |
struct cmdline_parser_params params; |
294 |
> |
|
295 |
> |
params.override = override; |
296 |
> |
params.initialize = initialize; |
297 |
> |
params.check_required = check_required; |
298 |
> |
params.check_ambiguity = 0; |
299 |
> |
params.print_errors = 1; |
300 |
> |
|
301 |
> |
result = cmdline_parser_internal (argc, argv, args_info, ¶ms, NULL); |
302 |
> |
|
303 |
> |
if (result == EXIT_FAILURE) |
304 |
> |
{ |
305 |
> |
cmdline_parser_free (args_info); |
306 |
> |
exit (EXIT_FAILURE); |
307 |
> |
} |
308 |
> |
|
309 |
> |
return result; |
310 |
> |
} |
311 |
> |
|
312 |
> |
int |
313 |
> |
cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name) |
314 |
> |
{ |
315 |
> |
int result = EXIT_SUCCESS; |
316 |
> |
|
317 |
> |
if (cmdline_parser_required2(args_info, prog_name, NULL) > 0) |
318 |
> |
result = EXIT_FAILURE; |
319 |
> |
|
320 |
> |
if (result == EXIT_FAILURE) |
321 |
> |
{ |
322 |
> |
cmdline_parser_free (args_info); |
323 |
> |
exit (EXIT_FAILURE); |
324 |
> |
} |
325 |
> |
|
326 |
> |
return result; |
327 |
> |
} |
328 |
> |
|
329 |
> |
int |
330 |
> |
cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error) |
331 |
> |
{ |
332 |
> |
int error = 0; |
333 |
> |
|
334 |
> |
/* checks for required options */ |
335 |
> |
if (! args_info->input_given) |
336 |
> |
{ |
337 |
> |
fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : "")); |
338 |
> |
error = 1; |
339 |
> |
} |
340 |
> |
|
341 |
> |
if (! args_info->model_given) |
342 |
> |
{ |
343 |
> |
fprintf (stderr, "%s: '--model' option required%s\n", prog_name, (additional_error ? additional_error : "")); |
344 |
> |
error = 1; |
345 |
> |
} |
346 |
> |
|
347 |
> |
|
348 |
> |
/* checks for dependences among options */ |
349 |
|
|
350 |
+ |
return error; |
351 |
+ |
} |
352 |
+ |
|
353 |
+ |
|
354 |
+ |
static char *package_name = 0; |
355 |
+ |
|
356 |
+ |
/** |
357 |
+ |
* @brief updates an option |
358 |
+ |
* @param field the generic pointer to the field to update |
359 |
+ |
* @param orig_field the pointer to the orig field |
360 |
+ |
* @param field_given the pointer to the number of occurrence of this option |
361 |
+ |
* @param prev_given the pointer to the number of occurrence already seen |
362 |
+ |
* @param value the argument for this option (if null no arg was specified) |
363 |
+ |
* @param possible_values the possible values for this option (if specified) |
364 |
+ |
* @param default_value the default value (in case the option only accepts fixed values) |
365 |
+ |
* @param arg_type the type of this option |
366 |
+ |
* @param check_ambiguity @see cmdline_parser_params.check_ambiguity |
367 |
+ |
* @param override @see cmdline_parser_params.override |
368 |
+ |
* @param no_free whether to free a possible previous value |
369 |
+ |
* @param multiple_option whether this is a multiple option |
370 |
+ |
* @param long_opt the corresponding long option |
371 |
+ |
* @param short_opt the corresponding short option (or '-' if none) |
372 |
+ |
* @param additional_error possible further error specification |
373 |
+ |
*/ |
374 |
+ |
static |
375 |
+ |
int update_arg(void *field, char **orig_field, |
376 |
+ |
unsigned int *field_given, unsigned int *prev_given, |
377 |
+ |
char *value, char *possible_values[], const char *default_value, |
378 |
+ |
cmdline_parser_arg_type arg_type, |
379 |
+ |
int check_ambiguity, int override, |
380 |
+ |
int no_free, int multiple_option, |
381 |
+ |
const char *long_opt, char short_opt, |
382 |
+ |
const char *additional_error) |
383 |
+ |
{ |
384 |
+ |
char *stop_char = 0; |
385 |
+ |
const char *val = value; |
386 |
+ |
int found; |
387 |
+ |
char **string_field; |
388 |
+ |
|
389 |
+ |
stop_char = 0; |
390 |
+ |
found = 0; |
391 |
+ |
|
392 |
+ |
if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given))) |
393 |
+ |
{ |
394 |
+ |
if (short_opt != '-') |
395 |
+ |
fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n", |
396 |
+ |
package_name, long_opt, short_opt, |
397 |
+ |
(additional_error ? additional_error : "")); |
398 |
+ |
else |
399 |
+ |
fprintf (stderr, "%s: `--%s' option given more than once%s\n", |
400 |
+ |
package_name, long_opt, |
401 |
+ |
(additional_error ? additional_error : "")); |
402 |
+ |
return 1; /* failure */ |
403 |
+ |
} |
404 |
+ |
|
405 |
+ |
|
406 |
+ |
if (field_given && *field_given && ! override) |
407 |
+ |
return 0; |
408 |
+ |
if (prev_given) |
409 |
+ |
(*prev_given)++; |
410 |
+ |
if (field_given) |
411 |
+ |
(*field_given)++; |
412 |
+ |
if (possible_values) |
413 |
+ |
val = possible_values[found]; |
414 |
+ |
|
415 |
+ |
switch(arg_type) { |
416 |
+ |
case ARG_FLAG: |
417 |
+ |
*((int *)field) = !*((int *)field); |
418 |
+ |
break; |
419 |
+ |
case ARG_STRING: |
420 |
+ |
if (val) { |
421 |
+ |
string_field = (char **)field; |
422 |
+ |
if (!no_free && *string_field) |
423 |
+ |
free (*string_field); /* free previous string */ |
424 |
+ |
*string_field = gengetopt_strdup (val); |
425 |
+ |
} |
426 |
+ |
break; |
427 |
+ |
default: |
428 |
+ |
break; |
429 |
+ |
}; |
430 |
+ |
|
431 |
+ |
|
432 |
+ |
/* store the original value */ |
433 |
+ |
switch(arg_type) { |
434 |
+ |
case ARG_NO: |
435 |
+ |
case ARG_FLAG: |
436 |
+ |
break; |
437 |
+ |
default: |
438 |
+ |
if (value && orig_field) { |
439 |
+ |
if (no_free) { |
440 |
+ |
*orig_field = value; |
441 |
+ |
} else { |
442 |
+ |
if (*orig_field) |
443 |
+ |
free (*orig_field); /* free previous string */ |
444 |
+ |
*orig_field = gengetopt_strdup (value); |
445 |
+ |
} |
446 |
+ |
} |
447 |
+ |
}; |
448 |
+ |
|
449 |
+ |
return 0; /* OK */ |
450 |
+ |
} |
451 |
+ |
|
452 |
+ |
|
453 |
+ |
int |
454 |
+ |
cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_info *args_info, |
455 |
+ |
struct cmdline_parser_params *params, const char *additional_error) |
456 |
+ |
{ |
457 |
+ |
int c; /* Character of the parsed option. */ |
458 |
+ |
|
459 |
+ |
int error = 0; |
460 |
+ |
struct gengetopt_args_info local_args_info; |
461 |
+ |
|
462 |
+ |
int override; |
463 |
+ |
int initialize; |
464 |
+ |
int check_required; |
465 |
+ |
int check_ambiguity; |
466 |
+ |
|
467 |
+ |
package_name = argv[0]; |
468 |
+ |
|
469 |
+ |
override = params->override; |
470 |
+ |
initialize = params->initialize; |
471 |
+ |
check_required = params->check_required; |
472 |
+ |
check_ambiguity = params->check_ambiguity; |
473 |
+ |
|
474 |
+ |
if (initialize) |
475 |
+ |
cmdline_parser_init (args_info); |
476 |
+ |
|
477 |
+ |
cmdline_parser_init (&local_args_info); |
478 |
+ |
|
479 |
|
optarg = 0; |
480 |
< |
optind = 1; |
481 |
< |
opterr = 1; |
480 |
> |
optind = 0; |
481 |
> |
opterr = params->print_errors; |
482 |
|
optopt = '?'; |
483 |
|
|
484 |
|
while (1) |
485 |
|
{ |
486 |
|
int option_index = 0; |
93 |
– |
char *stop_char; |
487 |
|
|
488 |
|
static struct option long_options[] = { |
489 |
|
{ "help", 0, NULL, 'h' }, |
490 |
|
{ "version", 0, NULL, 'V' }, |
491 |
|
{ "input", 1, NULL, 'i' }, |
492 |
|
{ "output", 1, NULL, 'o' }, |
100 |
– |
{ "viscosity", 1, NULL, 0 }, |
101 |
– |
{ "temperature", 1, NULL, 0 }, |
102 |
– |
{ "sigma", 1, NULL, 0 }, |
493 |
|
{ "model", 1, NULL, 0 }, |
494 |
+ |
{ "beads", 0, NULL, 'b' }, |
495 |
|
{ NULL, 0, NULL, 0 } |
496 |
|
}; |
497 |
|
|
498 |
< |
stop_char = 0; |
108 |
< |
c = getopt_long (argc, argv, "hVi:o:", long_options, &option_index); |
498 |
> |
c = getopt_long (argc, argv, "hVi:o:b", long_options, &option_index); |
499 |
|
|
500 |
|
if (c == -1) break; /* Exit from `while (1)' loop. */ |
501 |
|
|
502 |
|
switch (c) |
503 |
|
{ |
504 |
|
case 'h': /* Print help and exit. */ |
115 |
– |
clear_args (); |
505 |
|
cmdline_parser_print_help (); |
506 |
+ |
cmdline_parser_free (&local_args_info); |
507 |
|
exit (EXIT_SUCCESS); |
508 |
|
|
509 |
|
case 'V': /* Print version and exit. */ |
120 |
– |
clear_args (); |
510 |
|
cmdline_parser_print_version (); |
511 |
+ |
cmdline_parser_free (&local_args_info); |
512 |
|
exit (EXIT_SUCCESS); |
513 |
|
|
514 |
< |
case 'i': /* input dump file. */ |
515 |
< |
if (args_info->input_given) |
516 |
< |
{ |
517 |
< |
fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE); |
518 |
< |
clear_args (); |
519 |
< |
exit (EXIT_FAILURE); |
520 |
< |
} |
521 |
< |
args_info->input_given = 1; |
522 |
< |
args_info->input_arg = gengetopt_strdup (optarg); |
514 |
> |
case 'i': /* input MetaData (md) file. */ |
515 |
> |
|
516 |
> |
|
517 |
> |
if (update_arg( (void *)&(args_info->input_arg), |
518 |
> |
&(args_info->input_orig), &(args_info->input_given), |
519 |
> |
&(local_args_info.input_given), optarg, 0, 0, ARG_STRING, |
520 |
> |
check_ambiguity, override, 0, 0, |
521 |
> |
"input", 'i', |
522 |
> |
additional_error)) |
523 |
> |
goto failure; |
524 |
> |
|
525 |
|
break; |
134 |
– |
|
526 |
|
case 'o': /* output file prefix. */ |
527 |
< |
if (args_info->output_given) |
528 |
< |
{ |
529 |
< |
fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE); |
530 |
< |
clear_args (); |
531 |
< |
exit (EXIT_FAILURE); |
532 |
< |
} |
533 |
< |
args_info->output_given = 1; |
534 |
< |
if (args_info->output_arg) |
535 |
< |
free (args_info->output_arg); /* free default string */ |
536 |
< |
args_info->output_arg = gengetopt_strdup (optarg); |
527 |
> |
|
528 |
> |
|
529 |
> |
if (update_arg( (void *)&(args_info->output_arg), |
530 |
> |
&(args_info->output_orig), &(args_info->output_given), |
531 |
> |
&(local_args_info.output_given), optarg, 0, "hydro", ARG_STRING, |
532 |
> |
check_ambiguity, override, 0, 0, |
533 |
> |
"output", 'o', |
534 |
> |
additional_error)) |
535 |
> |
goto failure; |
536 |
> |
|
537 |
|
break; |
538 |
+ |
case 'b': /* generate the beads only, hydrodynamics will be performed. */ |
539 |
+ |
|
540 |
+ |
|
541 |
+ |
if (update_arg((void *)&(args_info->beads_flag), 0, &(args_info->beads_given), |
542 |
+ |
&(local_args_info.beads_given), optarg, 0, 0, ARG_FLAG, |
543 |
+ |
check_ambiguity, override, 1, 0, "beads", 'b', |
544 |
+ |
additional_error)) |
545 |
+ |
goto failure; |
546 |
+ |
|
547 |
+ |
break; |
548 |
|
|
148 |
– |
|
549 |
|
case 0: /* Long option with no short option */ |
550 |
< |
/* viscosity of solvent. */ |
551 |
< |
if (strcmp (long_options[option_index].name, "viscosity") == 0) |
550 |
> |
/* hydrodynamics model (supports RoughShell and BeadModel). */ |
551 |
> |
if (strcmp (long_options[option_index].name, "model") == 0) |
552 |
|
{ |
153 |
– |
if (args_info->viscosity_given) |
154 |
– |
{ |
155 |
– |
fprintf (stderr, "%s: `--viscosity' option given more than once\n", CMDLINE_PARSER_PACKAGE); |
156 |
– |
clear_args (); |
157 |
– |
exit (EXIT_FAILURE); |
158 |
– |
} |
159 |
– |
args_info->viscosity_given = 1; |
160 |
– |
args_info->viscosity_arg = strtod (optarg, NULL); |
161 |
– |
break; |
162 |
– |
} |
553 |
|
|
164 |
– |
/* temperature of the system. */ |
165 |
– |
else if (strcmp (long_options[option_index].name, "temperature") == 0) |
166 |
– |
{ |
167 |
– |
if (args_info->temperature_given) |
168 |
– |
{ |
169 |
– |
fprintf (stderr, "%s: `--temperature' option given more than once\n", CMDLINE_PARSER_PACKAGE); |
170 |
– |
clear_args (); |
171 |
– |
exit (EXIT_FAILURE); |
172 |
– |
} |
173 |
– |
args_info->temperature_given = 1; |
174 |
– |
args_info->temperature_arg = strtod (optarg, NULL); |
175 |
– |
break; |
176 |
– |
} |
554 |
|
|
555 |
< |
/* diameter of beads(use with rough shell model). */ |
556 |
< |
else if (strcmp (long_options[option_index].name, "sigma") == 0) |
557 |
< |
{ |
558 |
< |
if (args_info->sigma_given) |
559 |
< |
{ |
560 |
< |
fprintf (stderr, "%s: `--sigma' option given more than once\n", CMDLINE_PARSER_PACKAGE); |
561 |
< |
clear_args (); |
185 |
< |
exit (EXIT_FAILURE); |
186 |
< |
} |
187 |
< |
args_info->sigma_given = 1; |
188 |
< |
args_info->sigma_arg = strtod (optarg, NULL); |
189 |
< |
break; |
190 |
< |
} |
555 |
> |
if (update_arg( (void *)&(args_info->model_arg), |
556 |
> |
&(args_info->model_orig), &(args_info->model_given), |
557 |
> |
&(local_args_info.model_given), optarg, 0, 0, ARG_STRING, |
558 |
> |
check_ambiguity, override, 0, 0, |
559 |
> |
"model", '-', |
560 |
> |
additional_error)) |
561 |
> |
goto failure; |
562 |
|
|
192 |
– |
/* hydrodynamics model (support RoughShell and BeadModel). */ |
193 |
– |
else if (strcmp (long_options[option_index].name, "model") == 0) |
194 |
– |
{ |
195 |
– |
if (args_info->model_given) |
196 |
– |
{ |
197 |
– |
fprintf (stderr, "%s: `--model' option given more than once\n", CMDLINE_PARSER_PACKAGE); |
198 |
– |
clear_args (); |
199 |
– |
exit (EXIT_FAILURE); |
200 |
– |
} |
201 |
– |
args_info->model_given = 1; |
202 |
– |
args_info->model_arg = gengetopt_strdup (optarg); |
203 |
– |
break; |
563 |
|
} |
564 |
|
|
565 |
< |
|
565 |
> |
break; |
566 |
|
case '?': /* Invalid option. */ |
567 |
|
/* `getopt_long' already printed an error message. */ |
568 |
< |
exit (EXIT_FAILURE); |
568 |
> |
goto failure; |
569 |
|
|
570 |
|
default: /* bug: option not considered. */ |
571 |
< |
fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c); |
571 |
> |
fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : "")); |
572 |
|
abort (); |
573 |
|
} /* switch */ |
574 |
|
} /* while */ |
575 |
|
|
576 |
|
|
577 |
< |
if (! args_info->input_given) |
577 |
> |
|
578 |
> |
if (check_required) |
579 |
|
{ |
580 |
< |
fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE); |
221 |
< |
missing_required_options = 1; |
580 |
> |
error += cmdline_parser_required2 (args_info, argv[0], additional_error); |
581 |
|
} |
223 |
– |
if (! args_info->viscosity_given) |
224 |
– |
{ |
225 |
– |
fprintf (stderr, "%s: '--viscosity' option required\n", CMDLINE_PARSER_PACKAGE); |
226 |
– |
missing_required_options = 1; |
227 |
– |
} |
228 |
– |
if (! args_info->temperature_given) |
229 |
– |
{ |
230 |
– |
fprintf (stderr, "%s: '--temperature' option required\n", CMDLINE_PARSER_PACKAGE); |
231 |
– |
missing_required_options = 1; |
232 |
– |
} |
233 |
– |
if (! args_info->model_given) |
234 |
– |
{ |
235 |
– |
fprintf (stderr, "%s: '--model' option required\n", CMDLINE_PARSER_PACKAGE); |
236 |
– |
missing_required_options = 1; |
237 |
– |
} |
238 |
– |
if ( missing_required_options ) |
239 |
– |
exit (EXIT_FAILURE); |
582 |
|
|
583 |
+ |
cmdline_parser_release (&local_args_info); |
584 |
+ |
|
585 |
+ |
if ( error ) |
586 |
+ |
return (EXIT_FAILURE); |
587 |
+ |
|
588 |
|
return 0; |
589 |
+ |
|
590 |
+ |
failure: |
591 |
+ |
|
592 |
+ |
cmdline_parser_release (&local_args_info); |
593 |
+ |
return (EXIT_FAILURE); |
594 |
|
} |