| 1 | /** @file DynamicPropsCmd.h | 
| 2 | *  @brief The header file for the command line option parser | 
| 3 | *  generated by GNU Gengetopt version 2.22.4 | 
| 4 | *  http://www.gnu.org/software/gengetopt. | 
| 5 | *  DO NOT modify this file, since it can be overwritten | 
| 6 | *  @author GNU Gengetopt by Lorenzo Bettini */ | 
| 7 |  | 
| 8 | #ifndef DYNAMICPROPSCMD_H | 
| 9 | #define DYNAMICPROPSCMD_H | 
| 10 |  | 
| 11 | /* If we use autoconf.  */ | 
| 12 | #ifdef HAVE_CONFIG_H | 
| 13 | #include "config.h" | 
| 14 | #endif | 
| 15 |  | 
| 16 | #include <stdio.h> /* for FILE */ | 
| 17 |  | 
| 18 | #ifdef __cplusplus | 
| 19 | extern "C" { | 
| 20 | #endif /* __cplusplus */ | 
| 21 |  | 
| 22 | #ifndef CMDLINE_PARSER_PACKAGE | 
| 23 | /** @brief the program name (used for printing errors) */ | 
| 24 | #define CMDLINE_PARSER_PACKAGE "DynamicProps" | 
| 25 | #endif | 
| 26 |  | 
| 27 | #ifndef CMDLINE_PARSER_PACKAGE_NAME | 
| 28 | /** @brief the complete program name (used for help and version) */ | 
| 29 | #define CMDLINE_PARSER_PACKAGE_NAME "DynamicProps" | 
| 30 | #endif | 
| 31 |  | 
| 32 | #ifndef CMDLINE_PARSER_VERSION | 
| 33 | /** @brief the program version */ | 
| 34 | #define CMDLINE_PARSER_VERSION "1.00" | 
| 35 | #endif | 
| 36 |  | 
| 37 | /** @brief Where the command line options are stored */ | 
| 38 | struct gengetopt_args_info | 
| 39 | { | 
| 40 | const char *help_help; /**< @brief Print help and exit help description.  */ | 
| 41 | const char *version_help; /**< @brief Print version and exit help description.  */ | 
| 42 | char * input_arg;     /**< @brief input dump file.  */ | 
| 43 | char * input_orig;    /**< @brief input dump file original value given at command line.  */ | 
| 44 | const char *input_help; /**< @brief input dump file help description.  */ | 
| 45 | char * output_arg;    /**< @brief output file name.  */ | 
| 46 | char * output_orig;   /**< @brief output file name original value given at command line.  */ | 
| 47 | const char *output_help; /**< @brief output file name help description.  */ | 
| 48 | char * sele1_arg;     /**< @brief select first stuntdouble set.  */ | 
| 49 | char * sele1_orig;    /**< @brief select first stuntdouble set original value given at command line.  */ | 
| 50 | const char *sele1_help; /**< @brief select first stuntdouble set help description.  */ | 
| 51 | char * sele2_arg;     /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1).  */ | 
| 52 | char * sele2_orig;    /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) original value given at command line.  */ | 
| 53 | const char *sele2_help; /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) help description.  */ | 
| 54 | int order_arg;        /**< @brief Lengendre Polynomial Order.  */ | 
| 55 | char * order_orig;    /**< @brief Lengendre Polynomial Order original value given at command line.  */ | 
| 56 | const char *order_help; /**< @brief Lengendre Polynomial Order help description.  */ | 
| 57 | int nzbins_arg;       /**< @brief Number of Z bins (default='100').  */ | 
| 58 | char * nzbins_orig;   /**< @brief Number of Z bins original value given at command line.  */ | 
| 59 | const char *nzbins_help; /**< @brief Number of Z bins help description.  */ | 
| 60 | char * memory_arg;    /**< @brief Available memory (defaults to 2G) (default='2G').  */ | 
| 61 | char * memory_orig;   /**< @brief Available memory (defaults to 2G) original value given at command line.  */ | 
| 62 | const char *memory_help; /**< @brief Available memory (defaults to 2G) help description.  */ | 
| 63 | const char *selecorr_help; /**< @brief selection correlation function help description.  */ | 
| 64 | const char *rcorr_help; /**< @brief rmsd help description.  */ | 
| 65 | const char *vcorr_help; /**< @brief velocity correlation function help description.  */ | 
| 66 | const char *vcorrZ_help; /**< @brief velocity correlation function along z-axis help description.  */ | 
| 67 | const char *vcorrR_help; /**< @brief velocity correlation function projected radially help description.  */ | 
| 68 | const char *dcorr_help; /**< @brief dipole correlation function help description.  */ | 
| 69 | const char *lcorr_help; /**< @brief Lengendre correlation function help description.  */ | 
| 70 | const char *lcorrZ_help; /**< @brief Lengendre correlation function binned by Z help description.  */ | 
| 71 | const char *cohZ_help; /**< @brief Lengendre correlation function for OH bond vectors binned by Z help description.  */ | 
| 72 | const char *sdcorr_help; /**< @brief System dipole correlation function help description.  */ | 
| 73 | const char *r_rcorr_help; /**< @brief Radial rmsd help description.  */ | 
| 74 | const char *thetacorr_help; /**< @brief Angular rmsd help description.  */ | 
| 75 | const char *drcorr_help; /**< @brief Directional rmsd for particles with unit vectors help description.  */ | 
| 76 | const char *helfandEcorr_help; /**< @brief Helfand moment for thermal conductvity help description.  */ | 
| 77 | const char *momentum_help; /**< @brief Helfand momentum for viscosity help description.  */ | 
| 78 | const char *stresscorr_help; /**< @brief Stress tensor correlation function help description.  */ | 
| 79 | const char *bondcorr_help; /**< @brief Bond extension correlation function help description.  */ | 
| 80 | const char *freqfluccorr_help; /**< @brief Frequency Fluctuation correlation function help description.  */ | 
| 81 |  | 
| 82 | unsigned int help_given ;     /**< @brief Whether help was given.  */ | 
| 83 | unsigned int version_given ;  /**< @brief Whether version was given.  */ | 
| 84 | unsigned int input_given ;    /**< @brief Whether input was given.  */ | 
| 85 | unsigned int output_given ;   /**< @brief Whether output was given.  */ | 
| 86 | unsigned int sele1_given ;    /**< @brief Whether sele1 was given.  */ | 
| 87 | unsigned int sele2_given ;    /**< @brief Whether sele2 was given.  */ | 
| 88 | unsigned int order_given ;    /**< @brief Whether order was given.  */ | 
| 89 | unsigned int nzbins_given ;   /**< @brief Whether nzbins was given.  */ | 
| 90 | unsigned int memory_given ;   /**< @brief Whether memory was given.  */ | 
| 91 | unsigned int selecorr_given ; /**< @brief Whether selecorr was given.  */ | 
| 92 | unsigned int rcorr_given ;    /**< @brief Whether rcorr was given.  */ | 
| 93 | unsigned int vcorr_given ;    /**< @brief Whether vcorr was given.  */ | 
| 94 | unsigned int vcorrZ_given ;   /**< @brief Whether vcorrZ was given.  */ | 
| 95 | unsigned int vcorrR_given ;   /**< @brief Whether vcorrR was given.  */ | 
| 96 | unsigned int dcorr_given ;    /**< @brief Whether dcorr was given.  */ | 
| 97 | unsigned int lcorr_given ;    /**< @brief Whether lcorr was given.  */ | 
| 98 | unsigned int lcorrZ_given ;   /**< @brief Whether lcorrZ was given.  */ | 
| 99 | unsigned int cohZ_given ;     /**< @brief Whether cohZ was given.  */ | 
| 100 | unsigned int sdcorr_given ;   /**< @brief Whether sdcorr was given.  */ | 
| 101 | unsigned int r_rcorr_given ;  /**< @brief Whether r_rcorr was given.  */ | 
| 102 | unsigned int thetacorr_given ;        /**< @brief Whether thetacorr was given.  */ | 
| 103 | unsigned int drcorr_given ;   /**< @brief Whether drcorr was given.  */ | 
| 104 | unsigned int helfandEcorr_given ;     /**< @brief Whether helfandEcorr was given.  */ | 
| 105 | unsigned int momentum_given ; /**< @brief Whether momentum was given.  */ | 
| 106 | unsigned int stresscorr_given ;       /**< @brief Whether stresscorr was given.  */ | 
| 107 | unsigned int bondcorr_given ; /**< @brief Whether bondcorr was given.  */ | 
| 108 | unsigned int freqfluccorr_given ;     /**< @brief Whether freqfluccorr was given.  */ | 
| 109 |  | 
| 110 | char **inputs ; /**< @brief unamed options (options without names) */ | 
| 111 | unsigned inputs_num ; /**< @brief unamed options number */ | 
| 112 | int dynamicProps_group_counter; /**< @brief Counter for group dynamicProps */ | 
| 113 | } ; | 
| 114 |  | 
| 115 | /** @brief The additional parameters to pass to parser functions */ | 
| 116 | struct cmdline_parser_params | 
| 117 | { | 
| 118 | int override; /**< @brief whether to override possibly already present options (default 0) */ | 
| 119 | int initialize; /**< @brief whether to initialize the option structure gengetopt_args_info (default 1) */ | 
| 120 | int check_required; /**< @brief whether to check that all required options were provided (default 1) */ | 
| 121 | int check_ambiguity; /**< @brief whether to check for options already specified in the option structure gengetopt_args_info (default 0) */ | 
| 122 | int print_errors; /**< @brief whether getopt_long should print an error message for a bad option (default 1) */ | 
| 123 | } ; | 
| 124 |  | 
| 125 | /** @brief the purpose string of the program */ | 
| 126 | extern const char *gengetopt_args_info_purpose; | 
| 127 | /** @brief the usage string of the program */ | 
| 128 | extern const char *gengetopt_args_info_usage; | 
| 129 | /** @brief all the lines making the help output */ | 
| 130 | extern const char *gengetopt_args_info_help[]; | 
| 131 |  | 
| 132 | /** | 
| 133 | * The command line parser | 
| 134 | * @param argc the number of command line options | 
| 135 | * @param argv the command line options | 
| 136 | * @param args_info the structure where option information will be stored | 
| 137 | * @return 0 if everything went fine, NON 0 if an error took place | 
| 138 | */ | 
| 139 | int cmdline_parser (int argc, char **argv, | 
| 140 | struct gengetopt_args_info *args_info); | 
| 141 |  | 
| 142 | /** | 
| 143 | * The command line parser (version with additional parameters - deprecated) | 
| 144 | * @param argc the number of command line options | 
| 145 | * @param argv the command line options | 
| 146 | * @param args_info the structure where option information will be stored | 
| 147 | * @param override whether to override possibly already present options | 
| 148 | * @param initialize whether to initialize the option structure my_args_info | 
| 149 | * @param check_required whether to check that all required options were provided | 
| 150 | * @return 0 if everything went fine, NON 0 if an error took place | 
| 151 | * @deprecated use cmdline_parser_ext() instead | 
| 152 | */ | 
| 153 | int cmdline_parser2 (int argc, char **argv, | 
| 154 | struct gengetopt_args_info *args_info, | 
| 155 | int override, int initialize, int check_required); | 
| 156 |  | 
| 157 | /** | 
| 158 | * The command line parser (version with additional parameters) | 
| 159 | * @param argc the number of command line options | 
| 160 | * @param argv the command line options | 
| 161 | * @param args_info the structure where option information will be stored | 
| 162 | * @param params additional parameters for the parser | 
| 163 | * @return 0 if everything went fine, NON 0 if an error took place | 
| 164 | */ | 
| 165 | int cmdline_parser_ext (int argc, char **argv, | 
| 166 | struct gengetopt_args_info *args_info, | 
| 167 | struct cmdline_parser_params *params); | 
| 168 |  | 
| 169 | /** | 
| 170 | * Save the contents of the option struct into an already open FILE stream. | 
| 171 | * @param outfile the stream where to dump options | 
| 172 | * @param args_info the option struct to dump | 
| 173 | * @return 0 if everything went fine, NON 0 if an error took place | 
| 174 | */ | 
| 175 | int cmdline_parser_dump(FILE *outfile, | 
| 176 | struct gengetopt_args_info *args_info); | 
| 177 |  | 
| 178 | /** | 
| 179 | * Save the contents of the option struct into a (text) file. | 
| 180 | * This file can be read by the config file parser (if generated by gengetopt) | 
| 181 | * @param filename the file where to save | 
| 182 | * @param args_info the option struct to save | 
| 183 | * @return 0 if everything went fine, NON 0 if an error took place | 
| 184 | */ | 
| 185 | int cmdline_parser_file_save(const char *filename, | 
| 186 | struct gengetopt_args_info *args_info); | 
| 187 |  | 
| 188 | /** | 
| 189 | * Print the help | 
| 190 | */ | 
| 191 | void cmdline_parser_print_help(void); | 
| 192 | /** | 
| 193 | * Print the version | 
| 194 | */ | 
| 195 | void cmdline_parser_print_version(void); | 
| 196 |  | 
| 197 | /** | 
| 198 | * Initializes all the fields a cmdline_parser_params structure | 
| 199 | * to their default values | 
| 200 | * @param params the structure to initialize | 
| 201 | */ | 
| 202 | void cmdline_parser_params_init(struct cmdline_parser_params *params); | 
| 203 |  | 
| 204 | /** | 
| 205 | * Allocates dynamically a cmdline_parser_params structure and initializes | 
| 206 | * all its fields to their default values | 
| 207 | * @return the created and initialized cmdline_parser_params structure | 
| 208 | */ | 
| 209 | struct cmdline_parser_params *cmdline_parser_params_create(void); | 
| 210 |  | 
| 211 | /** | 
| 212 | * Initializes the passed gengetopt_args_info structure's fields | 
| 213 | * (also set default values for options that have a default) | 
| 214 | * @param args_info the structure to initialize | 
| 215 | */ | 
| 216 | void cmdline_parser_init (struct gengetopt_args_info *args_info); | 
| 217 | /** | 
| 218 | * Deallocates the string fields of the gengetopt_args_info structure | 
| 219 | * (but does not deallocate the structure itself) | 
| 220 | * @param args_info the structure to deallocate | 
| 221 | */ | 
| 222 | void cmdline_parser_free (struct gengetopt_args_info *args_info); | 
| 223 |  | 
| 224 | /** | 
| 225 | * Checks that all the required options were specified | 
| 226 | * @param args_info the structure to check | 
| 227 | * @param prog_name the name of the program that will be used to print | 
| 228 | *   possible errors | 
| 229 | * @return | 
| 230 | */ | 
| 231 | int cmdline_parser_required (struct gengetopt_args_info *args_info, | 
| 232 | const char *prog_name); | 
| 233 |  | 
| 234 |  | 
| 235 | #ifdef __cplusplus | 
| 236 | } | 
| 237 | #endif /* __cplusplus */ | 
| 238 | #endif /* DYNAMICPROPSCMD_H */ |