applications/dynamicProps/DynamicPropsCmd.h

/** @file DynamicPropsCmd.h
 *  @brief The header file for the command line option parser
 *  generated by GNU Gengetopt version 2.22.4
 *  http://www.gnu.org/software/gengetopt.
 *  DO NOT modify this file, since it can be overwritten
 *  @author GNU Gengetopt by Lorenzo Bettini */

#ifndef DYNAMICPROPSCMD_H
#define DYNAMICPROPSCMD_H

/* If we use autoconf.  */
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif

#include <stdio.h> /* for FILE */

#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */

#ifndef CMDLINE_PARSER_PACKAGE
/** @brief the program name (used for printing errors) */
#define CMDLINE_PARSER_PACKAGE "DynamicProps"
#endif

#ifndef CMDLINE_PARSER_PACKAGE_NAME
/** @brief the complete program name (used for help and version) */
#define CMDLINE_PARSER_PACKAGE_NAME "DynamicProps"
#endif

#ifndef CMDLINE_PARSER_VERSION
/** @brief the program version */
#define CMDLINE_PARSER_VERSION "1.00"
#endif

/** @brief Where the command line options are stored */
struct gengetopt_args_info
{
  const char *help_help; /**< @brief Print help and exit help description.  */
  const char *version_help; /**< @brief Print version and exit help description.  */
  char * input_arg;     /**< @brief input dump file.  */
  char * input_orig;    /**< @brief input dump file original value given at command line.  */
  const char *input_help; /**< @brief input dump file help description.  */
  char * output_arg;    /**< @brief output file name.  */
  char * output_orig;   /**< @brief output file name original value given at command line.  */
  const char *output_help; /**< @brief output file name help description.  */
  char * sele1_arg;     /**< @brief select first stuntdouble set.  */
  char * sele1_orig;    /**< @brief select first stuntdouble set original value given at command line.  */
  const char *sele1_help; /**< @brief select first stuntdouble set help description.  */
  char * sele2_arg;     /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1).  */
  char * sele2_orig;    /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) original value given at command line.  */
  const char *sele2_help; /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) help description.  */
  int order_arg;        /**< @brief Lengendre Polynomial Order.  */
  char * order_orig;    /**< @brief Lengendre Polynomial Order original value given at command line.  */
  const char *order_help; /**< @brief Lengendre Polynomial Order help description.  */
  char * memory_arg;    /**< @brief Available memory (defaults to 2G) (default='2G').  */
  char * memory_orig;   /**< @brief Available memory (defaults to 2G) original value given at command line.  */
  const char *memory_help; /**< @brief Available memory (defaults to 2G) help description.  */
  const char *rcorr_help; /**< @brief rmsd help description.  */
  const char *vcorr_help; /**< @brief velocity correlation function help description.  */
  const char *dcorr_help; /**< @brief dipole correlation function help description.  */
  const char *lcorr_help; /**< @brief Lengendre correlation function help description.  */
  const char *r_rcorr_help; /**< @brief Radial rmsd help description.  */
  const char *thetacorr_help; /**< @brief Angular rmsd help description.  */
  const char *drcorr_help; /**< @brief Directional rmsd for particles with unit vectors help description.  */
  const char *helfandEcorr_help; /**< @brief Helfand moment for thermal conductvity help description.  */
  const char *stresscorr_help; /**< @brief Stress tensor correlation function help description.  */
  
  unsigned int help_given ;     /**< @brief Whether help was given.  */
  unsigned int version_given ;  /**< @brief Whether version was given.  */
  unsigned int input_given ;    /**< @brief Whether input was given.  */
  unsigned int output_given ;   /**< @brief Whether output was given.  */
  unsigned int sele1_given ;    /**< @brief Whether sele1 was given.  */
  unsigned int sele2_given ;    /**< @brief Whether sele2 was given.  */
  unsigned int order_given ;    /**< @brief Whether order was given.  */
  unsigned int memory_given ;   /**< @brief Whether memory was given.  */
  unsigned int rcorr_given ;    /**< @brief Whether rcorr was given.  */
  unsigned int vcorr_given ;    /**< @brief Whether vcorr was given.  */
  unsigned int dcorr_given ;    /**< @brief Whether dcorr was given.  */
  unsigned int lcorr_given ;    /**< @brief Whether lcorr was given.  */
  unsigned int r_rcorr_given ;  /**< @brief Whether r_rcorr was given.  */
  unsigned int thetacorr_given ;        /**< @brief Whether thetacorr was given.  */
  unsigned int drcorr_given ;   /**< @brief Whether drcorr was given.  */
  unsigned int helfandEcorr_given ;     /**< @brief Whether helfandEcorr was given.  */
  unsigned int stresscorr_given ;       /**< @brief Whether stresscorr was given.  */

  char **inputs ; /**< @brief unamed options (options without names) */
  unsigned inputs_num ; /**< @brief unamed options number */
  int dynamicProps_group_counter; /**< @brief Counter for group dynamicProps */
} ;

/** @brief The additional parameters to pass to parser functions */
struct cmdline_parser_params
{
  int override; /**< @brief whether to override possibly already present options (default 0) */
  int initialize; /**< @brief whether to initialize the option structure gengetopt_args_info (default 1) */
  int check_required; /**< @brief whether to check that all required options were provided (default 1) */
  int check_ambiguity; /**< @brief whether to check for options already specified in the option structure gengetopt_args_info (default 0) */
  int print_errors; /**< @brief whether getopt_long should print an error message for a bad option (default 1) */
} ;

/** @brief the purpose string of the program */
extern const char *gengetopt_args_info_purpose;
/** @brief the usage string of the program */
extern const char *gengetopt_args_info_usage;
/** @brief all the lines making the help output */
extern const char *gengetopt_args_info_help[];

/**
 * The command line parser
 * @param argc the number of command line options
 * @param argv the command line options
 * @param args_info the structure where option information will be stored
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser (int argc, char **argv,
  struct gengetopt_args_info *args_info);

/**
 * The command line parser (version with additional parameters - deprecated)
 * @param argc the number of command line options
 * @param argv the command line options
 * @param args_info the structure where option information will be stored
 * @param override whether to override possibly already present options
 * @param initialize whether to initialize the option structure my_args_info
 * @param check_required whether to check that all required options were provided
 * @return 0 if everything went fine, NON 0 if an error took place
 * @deprecated use cmdline_parser_ext() instead
 */
int cmdline_parser2 (int argc, char **argv,
  struct gengetopt_args_info *args_info,
  int override, int initialize, int check_required);

/**
 * The command line parser (version with additional parameters)
 * @param argc the number of command line options
 * @param argv the command line options
 * @param args_info the structure where option information will be stored
 * @param params additional parameters for the parser
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser_ext (int argc, char **argv,
  struct gengetopt_args_info *args_info,
  struct cmdline_parser_params *params);

/**
 * Save the contents of the option struct into an already open FILE stream.
 * @param outfile the stream where to dump options
 * @param args_info the option struct to dump
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser_dump(FILE *outfile,
  struct gengetopt_args_info *args_info);

/**
 * Save the contents of the option struct into a (text) file.
 * This file can be read by the config file parser (if generated by gengetopt)
 * @param filename the file where to save
 * @param args_info the option struct to save
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser_file_save(const char *filename,
  struct gengetopt_args_info *args_info);

/**
 * Print the help
 */
void cmdline_parser_print_help(void);
/**
 * Print the version
 */
void cmdline_parser_print_version(void);

/**
 * Initializes all the fields a cmdline_parser_params structure 
 * to their default values
 * @param params the structure to initialize
 */
void cmdline_parser_params_init(struct cmdline_parser_params *params);

/**
 * Allocates dynamically a cmdline_parser_params structure and initializes
 * all its fields to their default values
 * @return the created and initialized cmdline_parser_params structure
 */
struct cmdline_parser_params *cmdline_parser_params_create(void);

/**
 * Initializes the passed gengetopt_args_info structure's fields
 * (also set default values for options that have a default)
 * @param args_info the structure to initialize
 */
void cmdline_parser_init (struct gengetopt_args_info *args_info);
/**
 * Deallocates the string fields of the gengetopt_args_info structure
 * (but does not deallocate the structure itself)
 * @param args_info the structure to deallocate
 */
void cmdline_parser_free (struct gengetopt_args_info *args_info);

/**
 * Checks that all the required options were specified
 * @param args_info the structure to check
 * @param prog_name the name of the program that will be used to print
 *   possible errors
 * @return
 */
int cmdline_parser_required (struct gengetopt_args_info *args_info,
  const char *prog_name);


#ifdef __cplusplus
}
#endif /* __cplusplus */
#endif /* DYNAMICPROPSCMD_H */
Revision:	1596
Committed:	Mon Jul 25 17:30:53 2011 UTC (13 years, 9 months ago) by gezelter
Content type:	text/plain
File size:	9819 byte(s)
Log Message:	Updated the BlockSnapshotManager to use a specified memory footprint in constructor and not to rely on physmem and residentMem to figure out free memory. DynamicProps is the only program that uses the BlockSnapshotManager, so substantial changes were needed there as well.
#	Content
1	/** @file DynamicPropsCmd.h
2	* @brief The header file for the command line option parser
3	* generated by GNU Gengetopt version 2.22.4
4	* http://www.gnu.org/software/gengetopt.
5	* DO NOT modify this file, since it can be overwritten
6	* @author GNU Gengetopt by Lorenzo Bettini */
7
8	#ifndef DYNAMICPROPSCMD_H
9	#define DYNAMICPROPSCMD_H
10
11	/* If we use autoconf. */
12	#ifdef HAVE_CONFIG_H
13	#include "config.h"
14	#endif
15
16	#include <stdio.h> /* for FILE */
17
18	#ifdef __cplusplus
19	extern "C" {
20	#endif /* __cplusplus */
21
22	#ifndef CMDLINE_PARSER_PACKAGE
23	/** @brief the program name (used for printing errors) */
24	#define CMDLINE_PARSER_PACKAGE "DynamicProps"
25	#endif
26
27	#ifndef CMDLINE_PARSER_PACKAGE_NAME
28	/** @brief the complete program name (used for help and version) */
29	#define CMDLINE_PARSER_PACKAGE_NAME "DynamicProps"
30	#endif
31
32	#ifndef CMDLINE_PARSER_VERSION
33	/** @brief the program version */
34	#define CMDLINE_PARSER_VERSION "1.00"
35	#endif
36
37	/** @brief Where the command line options are stored */
38	struct gengetopt_args_info
39	{
40	const char help_help; /< @brief Print help and exit help description. /
41	const char version_help; /< @brief Print version and exit help description. /
42	char * input_arg; /*< @brief input dump file. /
43	char * input_orig; /*< @brief input dump file original value given at command line. /
44	const char input_help; /< @brief input dump file help description. /
45	char * output_arg; /*< @brief output file name. /
46	char * output_orig; /*< @brief output file name original value given at command line. /
47	const char output_help; /< @brief output file name help description. /
48	char * sele1_arg; /*< @brief select first stuntdouble set. /
49	char * sele1_orig; /*< @brief select first stuntdouble set original value given at command line. /
50	const char sele1_help; /< @brief select first stuntdouble set help description. /
51	char * sele2_arg; /*< @brief select second stuntdouble set (if sele2 is not set, use script from sele1). /
52	char * sele2_orig; /*< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) original value given at command line. /
53	const char sele2_help; /< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) help description. /
54	int order_arg; /*< @brief Lengendre Polynomial Order. /
55	char * order_orig; /*< @brief Lengendre Polynomial Order original value given at command line. /
56	const char order_help; /< @brief Lengendre Polynomial Order help description. /
57	char * memory_arg; /*< @brief Available memory (defaults to 2G) (default='2G'). /
58	char * memory_orig; /*< @brief Available memory (defaults to 2G) original value given at command line. /
59	const char memory_help; /< @brief Available memory (defaults to 2G) help description. /
60	const char rcorr_help; /< @brief rmsd help description. /
61	const char vcorr_help; /< @brief velocity correlation function help description. /
62	const char dcorr_help; /< @brief dipole correlation function help description. /
63	const char lcorr_help; /< @brief Lengendre correlation function help description. /
64	const char r_rcorr_help; /< @brief Radial rmsd help description. /
65	const char thetacorr_help; /< @brief Angular rmsd help description. /
66	const char drcorr_help; /< @brief Directional rmsd for particles with unit vectors help description. /
67	const char helfandEcorr_help; /< @brief Helfand moment for thermal conductvity help description. /
68	const char stresscorr_help; /< @brief Stress tensor correlation function help description. /
69
70	unsigned int help_given ; /*< @brief Whether help was given. /
71	unsigned int version_given ; /*< @brief Whether version was given. /
72	unsigned int input_given ; /*< @brief Whether input was given. /
73	unsigned int output_given ; /*< @brief Whether output was given. /
74	unsigned int sele1_given ; /*< @brief Whether sele1 was given. /
75	unsigned int sele2_given ; /*< @brief Whether sele2 was given. /
76	unsigned int order_given ; /*< @brief Whether order was given. /
77	unsigned int memory_given ; /*< @brief Whether memory was given. /
78	unsigned int rcorr_given ; /*< @brief Whether rcorr was given. /
79	unsigned int vcorr_given ; /*< @brief Whether vcorr was given. /
80	unsigned int dcorr_given ; /*< @brief Whether dcorr was given. /
81	unsigned int lcorr_given ; /*< @brief Whether lcorr was given. /
82	unsigned int r_rcorr_given ; /*< @brief Whether r_rcorr was given. /
83	unsigned int thetacorr_given ; /*< @brief Whether thetacorr was given. /
84	unsigned int drcorr_given ; /*< @brief Whether drcorr was given. /
85	unsigned int helfandEcorr_given ; /*< @brief Whether helfandEcorr was given. /
86	unsigned int stresscorr_given ; /*< @brief Whether stresscorr was given. /
87
88	char inputs ; /< @brief unamed options (options without names) */
89	unsigned inputs_num ; /*< @brief unamed options number /
90	int dynamicProps_group_counter; /*< @brief Counter for group dynamicProps /
91	} ;
92
93	/** @brief The additional parameters to pass to parser functions */
94	struct cmdline_parser_params
95	{
96	int override; /*< @brief whether to override possibly already present options (default 0) /
97	int initialize; /*< @brief whether to initialize the option structure gengetopt_args_info (default 1) /
98	int check_required; /*< @brief whether to check that all required options were provided (default 1) /
99	int check_ambiguity; /*< @brief whether to check for options already specified in the option structure gengetopt_args_info (default 0) /
100	int print_errors; /*< @brief whether getopt_long should print an error message for a bad option (default 1) /
101	} ;
102
103	/** @brief the purpose string of the program */
104	extern const char *gengetopt_args_info_purpose;
105	/** @brief the usage string of the program */
106	extern const char *gengetopt_args_info_usage;
107	/** @brief all the lines making the help output */
108	extern const char *gengetopt_args_info_help[];
109
110	/**
111	* The command line parser
112	* @param argc the number of command line options
113	* @param argv the command line options
114	* @param args_info the structure where option information will be stored
115	* @return 0 if everything went fine, NON 0 if an error took place
116	*/
117	int cmdline_parser (int argc, char **argv,
118	struct gengetopt_args_info *args_info);
119
120	/**
121	* The command line parser (version with additional parameters - deprecated)
122	* @param argc the number of command line options
123	* @param argv the command line options
124	* @param args_info the structure where option information will be stored
125	* @param override whether to override possibly already present options
126	* @param initialize whether to initialize the option structure my_args_info
127	* @param check_required whether to check that all required options were provided
128	* @return 0 if everything went fine, NON 0 if an error took place
129	* @deprecated use cmdline_parser_ext() instead
130	*/
131	int cmdline_parser2 (int argc, char **argv,
132	struct gengetopt_args_info *args_info,
133	int override, int initialize, int check_required);
134
135	/**
136	* The command line parser (version with additional parameters)
137	* @param argc the number of command line options
138	* @param argv the command line options
139	* @param args_info the structure where option information will be stored
140	* @param params additional parameters for the parser
141	* @return 0 if everything went fine, NON 0 if an error took place
142	*/
143	int cmdline_parser_ext (int argc, char **argv,
144	struct gengetopt_args_info *args_info,
145	struct cmdline_parser_params *params);
146
147	/**
148	* Save the contents of the option struct into an already open FILE stream.
149	* @param outfile the stream where to dump options
150	* @param args_info the option struct to dump
151	* @return 0 if everything went fine, NON 0 if an error took place
152	*/
153	int cmdline_parser_dump(FILE *outfile,
154	struct gengetopt_args_info *args_info);
155
156	/**
157	* Save the contents of the option struct into a (text) file.
158	* This file can be read by the config file parser (if generated by gengetopt)
159	* @param filename the file where to save
160	* @param args_info the option struct to save
161	* @return 0 if everything went fine, NON 0 if an error took place
162	*/
163	int cmdline_parser_file_save(const char *filename,
164	struct gengetopt_args_info *args_info);
165
166	/**
167	* Print the help
168	*/
169	void cmdline_parser_print_help(void);
170	/**
171	* Print the version
172	*/
173	void cmdline_parser_print_version(void);
174
175	/**
176	* Initializes all the fields a cmdline_parser_params structure
177	* to their default values
178	* @param params the structure to initialize
179	*/
180	void cmdline_parser_params_init(struct cmdline_parser_params *params);
181
182	/**
183	* Allocates dynamically a cmdline_parser_params structure and initializes
184	* all its fields to their default values
185	* @return the created and initialized cmdline_parser_params structure
186	*/
187	struct cmdline_parser_params *cmdline_parser_params_create(void);
188
189	/**
190	* Initializes the passed gengetopt_args_info structure's fields
191	* (also set default values for options that have a default)
192	* @param args_info the structure to initialize
193	*/
194	void cmdline_parser_init (struct gengetopt_args_info *args_info);
195	/**
196	* Deallocates the string fields of the gengetopt_args_info structure
197	* (but does not deallocate the structure itself)
198	* @param args_info the structure to deallocate
199	*/
200	void cmdline_parser_free (struct gengetopt_args_info *args_info);
201
202	/**
203	* Checks that all the required options were specified
204	* @param args_info the structure to check
205	* @param prog_name the name of the program that will be used to print
206	* possible errors
207	* @return
208	*/
209	int cmdline_parser_required (struct gengetopt_args_info *args_info,
210	const char *prog_name);
211
212
213	#ifdef __cplusplus
214	}
215	#endif /* __cplusplus */
216	#endif /* DYNAMICPROPSCMD_H */