applications/dynamicProps/DynamicPropsCmd.h

/** @file DynamicPropsCmd.h
 *  @brief The header file for the command line option parser
 *  generated by GNU Gengetopt version 2.22.4
 *  http://www.gnu.org/software/gengetopt.
 *  DO NOT modify this file, since it can be overwritten
 *  @author GNU Gengetopt by Lorenzo Bettini */

#ifndef DYNAMICPROPSCMD_H
#define DYNAMICPROPSCMD_H

/* If we use autoconf.  */
#ifdef HAVE_CONFIG_H
#include "config.h"
#endif

#include <stdio.h> /* for FILE */

#ifdef __cplusplus
extern "C" {
#endif /* __cplusplus */

#ifndef CMDLINE_PARSER_PACKAGE
/** @brief the program name (used for printing errors) */
#define CMDLINE_PARSER_PACKAGE "DynamicProps"
#endif

#ifndef CMDLINE_PARSER_PACKAGE_NAME
/** @brief the complete program name (used for help and version) */
#define CMDLINE_PARSER_PACKAGE_NAME "DynamicProps"
#endif

#ifndef CMDLINE_PARSER_VERSION
/** @brief the program version */
#define CMDLINE_PARSER_VERSION "1.00"
#endif

/** @brief Where the command line options are stored */
struct gengetopt_args_info
{
  const char *help_help; /**< @brief Print help and exit help description.  */
  const char *version_help; /**< @brief Print version and exit help description.  */
  char * input_arg;     /**< @brief input dump file.  */
  char * input_orig;    /**< @brief input dump file original value given at command line.  */
  const char *input_help; /**< @brief input dump file help description.  */
  char * output_arg;    /**< @brief output file name.  */
  char * output_orig;   /**< @brief output file name original value given at command line.  */
  const char *output_help; /**< @brief output file name help description.  */
  char * sele1_arg;     /**< @brief select first stuntdouble set.  */
  char * sele1_orig;    /**< @brief select first stuntdouble set original value given at command line.  */
  const char *sele1_help; /**< @brief select first stuntdouble set help description.  */
  char * sele2_arg;     /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1).  */
  char * sele2_orig;    /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) original value given at command line.  */
  const char *sele2_help; /**< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) help description.  */
  int order_arg;        /**< @brief Lengendre Polynomial Order.  */
  char * order_orig;    /**< @brief Lengendre Polynomial Order original value given at command line.  */
  const char *order_help; /**< @brief Lengendre Polynomial Order help description.  */
  char * memory_arg;    /**< @brief Available memory (defaults to 2G) (default='2G').  */
  char * memory_orig;   /**< @brief Available memory (defaults to 2G) original value given at command line.  */
  const char *memory_help; /**< @brief Available memory (defaults to 2G) help description.  */
  const char *rcorr_help; /**< @brief rmsd help description.  */
  const char *vcorr_help; /**< @brief velocity correlation function help description.  */
  const char *dcorr_help; /**< @brief dipole correlation function help description.  */
  const char *lcorr_help; /**< @brief Lengendre correlation function help description.  */
  const char *sdcorr_help; /**< @brief System dipole correlation function help description.  */
  const char *r_rcorr_help; /**< @brief Radial rmsd help description.  */
  const char *thetacorr_help; /**< @brief Angular rmsd help description.  */
  const char *drcorr_help; /**< @brief Directional rmsd for particles with unit vectors help description.  */
  const char *helfandEcorr_help; /**< @brief Helfand moment for thermal conductvity help description.  */
  const char *stresscorr_help; /**< @brief Stress tensor correlation function help description.  */
  
  unsigned int help_given ;     /**< @brief Whether help was given.  */
  unsigned int version_given ;  /**< @brief Whether version was given.  */
  unsigned int input_given ;    /**< @brief Whether input was given.  */
  unsigned int output_given ;   /**< @brief Whether output was given.  */
  unsigned int sele1_given ;    /**< @brief Whether sele1 was given.  */
  unsigned int sele2_given ;    /**< @brief Whether sele2 was given.  */
  unsigned int order_given ;    /**< @brief Whether order was given.  */
  unsigned int memory_given ;   /**< @brief Whether memory was given.  */
  unsigned int rcorr_given ;    /**< @brief Whether rcorr was given.  */
  unsigned int vcorr_given ;    /**< @brief Whether vcorr was given.  */
  unsigned int dcorr_given ;    /**< @brief Whether dcorr was given.  */
  unsigned int lcorr_given ;    /**< @brief Whether lcorr was given.  */
  unsigned int sdcorr_given ;   /**< @brief Whether sdcorr was given.  */
  unsigned int r_rcorr_given ;  /**< @brief Whether r_rcorr was given.  */
  unsigned int thetacorr_given ;        /**< @brief Whether thetacorr was given.  */
  unsigned int drcorr_given ;   /**< @brief Whether drcorr was given.  */
  unsigned int helfandEcorr_given ;     /**< @brief Whether helfandEcorr was given.  */
  unsigned int stresscorr_given ;       /**< @brief Whether stresscorr was given.  */

  int dynamicProps_group_counter; /**< @brief Counter for group dynamicProps */
} ;

/** @brief The additional parameters to pass to parser functions */
struct cmdline_parser_params
{
  int override; /**< @brief whether to override possibly already present options (default 0) */
  int initialize; /**< @brief whether to initialize the option structure gengetopt_args_info (default 1) */
  int check_required; /**< @brief whether to check that all required options were provided (default 1) */
  int check_ambiguity; /**< @brief whether to check for options already specified in the option structure gengetopt_args_info (default 0) */
  int print_errors; /**< @brief whether getopt_long should print an error message for a bad option (default 1) */
} ;

/** @brief the purpose string of the program */
extern const char *gengetopt_args_info_purpose;
/** @brief the usage string of the program */
extern const char *gengetopt_args_info_usage;
/** @brief all the lines making the help output */
extern const char *gengetopt_args_info_help[];

/**
 * The command line parser
 * @param argc the number of command line options
 * @param argv the command line options
 * @param args_info the structure where option information will be stored
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser (int argc, char **argv,
  struct gengetopt_args_info *args_info);

/**
 * The command line parser (version with additional parameters - deprecated)
 * @param argc the number of command line options
 * @param argv the command line options
 * @param args_info the structure where option information will be stored
 * @param override whether to override possibly already present options
 * @param initialize whether to initialize the option structure my_args_info
 * @param check_required whether to check that all required options were provided
 * @return 0 if everything went fine, NON 0 if an error took place
 * @deprecated use cmdline_parser_ext() instead
 */
int cmdline_parser2 (int argc, char **argv,
  struct gengetopt_args_info *args_info,
  int override, int initialize, int check_required);

/**
 * The command line parser (version with additional parameters)
 * @param argc the number of command line options
 * @param argv the command line options
 * @param args_info the structure where option information will be stored
 * @param params additional parameters for the parser
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser_ext (int argc, char **argv,
  struct gengetopt_args_info *args_info,
  struct cmdline_parser_params *params);

/**
 * Save the contents of the option struct into an already open FILE stream.
 * @param outfile the stream where to dump options
 * @param args_info the option struct to dump
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser_dump(FILE *outfile,
  struct gengetopt_args_info *args_info);

/**
 * Save the contents of the option struct into a (text) file.
 * This file can be read by the config file parser (if generated by gengetopt)
 * @param filename the file where to save
 * @param args_info the option struct to save
 * @return 0 if everything went fine, NON 0 if an error took place
 */
int cmdline_parser_file_save(const char *filename,
  struct gengetopt_args_info *args_info);

/**
 * Print the help
 */
void cmdline_parser_print_help(void);
/**
 * Print the version
 */
void cmdline_parser_print_version(void);

/**
 * Initializes all the fields a cmdline_parser_params structure 
 * to their default values
 * @param params the structure to initialize
 */
void cmdline_parser_params_init(struct cmdline_parser_params *params);

/**
 * Allocates dynamically a cmdline_parser_params structure and initializes
 * all its fields to their default values
 * @return the created and initialized cmdline_parser_params structure
 */
struct cmdline_parser_params *cmdline_parser_params_create(void);

/**
 * Initializes the passed gengetopt_args_info structure's fields
 * (also set default values for options that have a default)
 * @param args_info the structure to initialize
 */
void cmdline_parser_init (struct gengetopt_args_info *args_info);
/**
 * Deallocates the string fields of the gengetopt_args_info structure
 * (but does not deallocate the structure itself)
 * @param args_info the structure to deallocate
 */
void cmdline_parser_free (struct gengetopt_args_info *args_info);

/**
 * Checks that all the required options were specified
 * @param args_info the structure to check
 * @param prog_name the name of the program that will be used to print
 *   possible errors
 * @return
 */
int cmdline_parser_required (struct gengetopt_args_info *args_info,
  const char *prog_name);


#ifdef __cplusplus
}
#endif /* __cplusplus */
#endif /* DYNAMICPROPSCMD_H */
Revision:	1604
Committed:	Mon Aug 8 18:53:40 2011 UTC (13 years, 8 months ago) by jmichalk
Content type:	text/plain
File size:	9854 byte(s)
Log Message:	This commit should allow EADM simulations to be run on the cluster. Main additions include EADM_FF.hpp/cpp as well as a system dipole correlation option in DynamicProps.
#	User	Rev	Content
1	gezelter	1596	/** @file DynamicPropsCmd.h
2	chuckv	1565	* @brief The header file for the command line option parser
3			* generated by GNU Gengetopt version 2.22.4
4			* http://www.gnu.org/software/gengetopt.
5			* DO NOT modify this file, since it can be overwritten
6			* @author GNU Gengetopt by Lorenzo Bettini */
7	tim	320
8	gezelter	1596	#ifndef DYNAMICPROPSCMD_H
9			#define DYNAMICPROPSCMD_H
10	tim	320
11			/* If we use autoconf. */
12			#ifdef HAVE_CONFIG_H
13			#include "config.h"
14			#endif
15
16	chuckv	1565	#include <stdio.h> /* for FILE */
17
18	tim	320	#ifdef __cplusplus
19			extern "C" {
20			#endif /* __cplusplus */
21
22			#ifndef CMDLINE_PARSER_PACKAGE
23	chuckv	1565	/** @brief the program name (used for printing errors) */
24	tim	320	#define CMDLINE_PARSER_PACKAGE "DynamicProps"
25			#endif
26
27	chuckv	1565	#ifndef CMDLINE_PARSER_PACKAGE_NAME
28			/** @brief the complete program name (used for help and version) */
29			#define CMDLINE_PARSER_PACKAGE_NAME "DynamicProps"
30			#endif
31
32	tim	320	#ifndef CMDLINE_PARSER_VERSION
33	chuckv	1565	/** @brief the program version */
34	tim	320	#define CMDLINE_PARSER_VERSION "1.00"
35			#endif
36
37	chuckv	1565	/** @brief Where the command line options are stored */
38	tim	876	struct gengetopt_args_info
39			{
40	chuckv	1565	const char help_help; /< @brief Print help and exit help description. /
41			const char version_help; /< @brief Print version and exit help description. /
42			char * input_arg; /*< @brief input dump file. /
43			char * input_orig; /*< @brief input dump file original value given at command line. /
44			const char input_help; /< @brief input dump file help description. /
45			char * output_arg; /*< @brief output file name. /
46			char * output_orig; /*< @brief output file name original value given at command line. /
47			const char output_help; /< @brief output file name help description. /
48			char * sele1_arg; /*< @brief select first stuntdouble set. /
49			char * sele1_orig; /*< @brief select first stuntdouble set original value given at command line. /
50			const char sele1_help; /< @brief select first stuntdouble set help description. /
51			char * sele2_arg; /*< @brief select second stuntdouble set (if sele2 is not set, use script from sele1). /
52			char * sele2_orig; /*< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) original value given at command line. /
53			const char sele2_help; /< @brief select second stuntdouble set (if sele2 is not set, use script from sele1) help description. /
54			int order_arg; /*< @brief Lengendre Polynomial Order. /
55			char * order_orig; /*< @brief Lengendre Polynomial Order original value given at command line. /
56			const char order_help; /< @brief Lengendre Polynomial Order help description. /
57	gezelter	1596	char * memory_arg; /*< @brief Available memory (defaults to 2G) (default='2G'). /
58			char * memory_orig; /*< @brief Available memory (defaults to 2G) original value given at command line. /
59			const char memory_help; /< @brief Available memory (defaults to 2G) help description. /
60	chuckv	1565	const char rcorr_help; /< @brief rmsd help description. /
61			const char vcorr_help; /< @brief velocity correlation function help description. /
62			const char dcorr_help; /< @brief dipole correlation function help description. /
63			const char lcorr_help; /< @brief Lengendre correlation function help description. /
64	jmichalk	1604	const char sdcorr_help; /< @brief System dipole correlation function help description. /
65	chuckv	1565	const char r_rcorr_help; /< @brief Radial rmsd help description. /
66			const char thetacorr_help; /< @brief Angular rmsd help description. /
67			const char drcorr_help; /< @brief Directional rmsd for particles with unit vectors help description. /
68			const char helfandEcorr_help; /< @brief Helfand moment for thermal conductvity help description. /
69			const char stresscorr_help; /< @brief Stress tensor correlation function help description. /
70	chuckv	1098
71	chuckv	1565	unsigned int help_given ; /*< @brief Whether help was given. /
72			unsigned int version_given ; /*< @brief Whether version was given. /
73			unsigned int input_given ; /*< @brief Whether input was given. /
74			unsigned int output_given ; /*< @brief Whether output was given. /
75			unsigned int sele1_given ; /*< @brief Whether sele1 was given. /
76			unsigned int sele2_given ; /*< @brief Whether sele2 was given. /
77			unsigned int order_given ; /*< @brief Whether order was given. /
78	gezelter	1596	unsigned int memory_given ; /*< @brief Whether memory was given. /
79	chuckv	1565	unsigned int rcorr_given ; /*< @brief Whether rcorr was given. /
80			unsigned int vcorr_given ; /*< @brief Whether vcorr was given. /
81			unsigned int dcorr_given ; /*< @brief Whether dcorr was given. /
82			unsigned int lcorr_given ; /*< @brief Whether lcorr was given. /
83	jmichalk	1604	unsigned int sdcorr_given ; /*< @brief Whether sdcorr was given. /
84	chuckv	1565	unsigned int r_rcorr_given ; /*< @brief Whether r_rcorr was given. /
85			unsigned int thetacorr_given ; /*< @brief Whether thetacorr was given. /
86			unsigned int drcorr_given ; /*< @brief Whether drcorr was given. /
87			unsigned int helfandEcorr_given ; /*< @brief Whether helfandEcorr was given. /
88			unsigned int stresscorr_given ; /*< @brief Whether stresscorr was given. /
89	tim	320
90	chuckv	1565	int dynamicProps_group_counter; /*< @brief Counter for group dynamicProps /
91	tim	876	} ;
92	tim	320
93	chuckv	1565	/** @brief The additional parameters to pass to parser functions */
94			struct cmdline_parser_params
95			{
96			int override; /*< @brief whether to override possibly already present options (default 0) /
97			int initialize; /*< @brief whether to initialize the option structure gengetopt_args_info (default 1) /
98			int check_required; /*< @brief whether to check that all required options were provided (default 1) /
99			int check_ambiguity; /*< @brief whether to check for options already specified in the option structure gengetopt_args_info (default 0) /
100			int print_errors; /*< @brief whether getopt_long should print an error message for a bad option (default 1) /
101			} ;
102	tim	320
103	chuckv	1565	/** @brief the purpose string of the program */
104			extern const char *gengetopt_args_info_purpose;
105			/** @brief the usage string of the program */
106			extern const char *gengetopt_args_info_usage;
107			/** @brief all the lines making the help output */
108			extern const char *gengetopt_args_info_help[];
109
110			/**
111			* The command line parser
112			* @param argc the number of command line options
113			* @param argv the command line options
114			* @param args_info the structure where option information will be stored
115			* @return 0 if everything went fine, NON 0 if an error took place
116			*/
117			int cmdline_parser (int argc, char **argv,
118			struct gengetopt_args_info *args_info);
119
120			/**
121			* The command line parser (version with additional parameters - deprecated)
122			* @param argc the number of command line options
123			* @param argv the command line options
124			* @param args_info the structure where option information will be stored
125			* @param override whether to override possibly already present options
126			* @param initialize whether to initialize the option structure my_args_info
127			* @param check_required whether to check that all required options were provided
128			* @return 0 if everything went fine, NON 0 if an error took place
129			* @deprecated use cmdline_parser_ext() instead
130			*/
131			int cmdline_parser2 (int argc, char **argv,
132			struct gengetopt_args_info *args_info,
133			int override, int initialize, int check_required);
134
135			/**
136			* The command line parser (version with additional parameters)
137			* @param argc the number of command line options
138			* @param argv the command line options
139			* @param args_info the structure where option information will be stored
140			* @param params additional parameters for the parser
141			* @return 0 if everything went fine, NON 0 if an error took place
142			*/
143			int cmdline_parser_ext (int argc, char **argv,
144			struct gengetopt_args_info *args_info,
145			struct cmdline_parser_params *params);
146
147			/**
148			* Save the contents of the option struct into an already open FILE stream.
149			* @param outfile the stream where to dump options
150			* @param args_info the option struct to dump
151			* @return 0 if everything went fine, NON 0 if an error took place
152			*/
153			int cmdline_parser_dump(FILE *outfile,
154			struct gengetopt_args_info *args_info);
155
156			/**
157			* Save the contents of the option struct into a (text) file.
158			* This file can be read by the config file parser (if generated by gengetopt)
159			* @param filename the file where to save
160			* @param args_info the option struct to save
161			* @return 0 if everything went fine, NON 0 if an error took place
162			*/
163			int cmdline_parser_file_save(const char *filename,
164			struct gengetopt_args_info *args_info);
165
166			/**
167			* Print the help
168			*/
169	tim	876	void cmdline_parser_print_help(void);
170	chuckv	1565	/**
171			* Print the version
172			*/
173	tim	876	void cmdline_parser_print_version(void);
174	tim	320
175	chuckv	1565	/**
176			* Initializes all the fields a cmdline_parser_params structure
177			* to their default values
178			* @param params the structure to initialize
179			*/
180			void cmdline_parser_params_init(struct cmdline_parser_params *params);
181
182			/**
183			* Allocates dynamically a cmdline_parser_params structure and initializes
184			* all its fields to their default values
185			* @return the created and initialized cmdline_parser_params structure
186			*/
187			struct cmdline_parser_params *cmdline_parser_params_create(void);
188
189			/**
190			* Initializes the passed gengetopt_args_info structure's fields
191			* (also set default values for options that have a default)
192			* @param args_info the structure to initialize
193			*/
194	chuckv	1098	void cmdline_parser_init (struct gengetopt_args_info *args_info);
195	chuckv	1565	/**
196			* Deallocates the string fields of the gengetopt_args_info structure
197			* (but does not deallocate the structure itself)
198			* @param args_info the structure to deallocate
199			*/
200	chuckv	1098	void cmdline_parser_free (struct gengetopt_args_info *args_info);
201
202	chuckv	1565	/**
203			* Checks that all the required options were specified
204			* @param args_info the structure to check
205			* @param prog_name the name of the program that will be used to print
206			* possible errors
207			* @return
208			*/
209			int cmdline_parser_required (struct gengetopt_args_info *args_info,
210			const char *prog_name);
211	chuckv	1098
212
213	tim	320	#ifdef __cplusplus
214			}
215			#endif /* __cplusplus */
216	gezelter	1596	#endif /* DYNAMICPROPSCMD_H */