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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp
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Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents), Revision 876 by tim, Mon Jan 30 22:25:27 2006 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (file contents), Revision 1934 by gezelter, Mon Aug 26 14:15:09 2013 UTC

# Line 1 | Line 1
1   /*
2 <  File autogenerated by gengetopt version 2.11
2 >  File autogenerated by gengetopt version 2.22.4
3    generated with the following command:
4 <  /home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F DynamicPropsCmd
4 >  gengetopt --file-name=DynamicPropsCmd --unamed-opts
5  
6    The developers of gengetopt consider the fixed text that goes in all
7    gengetopt output files to be in the public domain:
8    we make no copyright claims on it.
9   */
10  
11 + /* If we use autoconf.  */
12 + #ifdef HAVE_CONFIG_H
13 + #include "config.h"
14 + #endif
15  
16   #include <stdio.h>
17   #include <stdlib.h>
18   #include <string.h>
19  
20 < /* If we use autoconf.  */
21 < #ifdef HAVE_CONFIG_H
18 < #include "config.h"
20 > #ifndef FIX_UNUSED
21 > #define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22   #endif
23  
24 < #include "getopt.h"
24 > #include <getopt.h>
25  
26   #include "DynamicPropsCmd.h"
27  
28 + const char *gengetopt_args_info_purpose = "";
29 +
30 + const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31 +
32 + const char *gengetopt_args_info_description = "";
33 +
34 + const char *gengetopt_args_info_help[] = {
35 +  "  -h, --help                    Print help and exit",
36 +  "  -V, --version                 Print version and exit",
37 +  "  -i, --input=filename          input dump file",
38 +  "  -o, --output=filename         output file name",
39 +  "      --sele1=selection script  select first stuntdouble set",
40 +  "      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41 +  "      --order=INT               Lengendre Polynomial Order",
42 +  "  -z, --nzbins=INT              Number of Z bins  (default=`100')",
43 +  "  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
44 +  "\n Group: dynamicProps\n   an option of this group is required",
45 +  "  -s, --selecorr                selection correlation function",
46 +  "  -r, --rcorr                   rmsd",
47 +  "  -v, --vcorr                   velocity correlation function",
48 +  "  -d, --dcorr                   dipole correlation function",
49 +  "  -l, --lcorr                   Lengendre correlation function",
50 +  "      --lcorrZ                  Lengendre correlation function binned by Z",
51 +  "      --cohZ                    Lengendre correlation function for OH bond \n                                  vectors binned by Z",
52 +  "  -M, --sdcorr                  System dipole correlation function",
53 +  "      --r_rcorr                 Radial rmsd",
54 +  "      --thetacorr               Angular rmsd",
55 +  "      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
56 +  "      --helfandEcorr            Helfand moment for thermal conductvity",
57 +  "  -p, --momentum                Helfand momentum for viscosity",
58 +  "      --stresscorr              Stress tensor correlation function",
59 +    0
60 + };
61 +
62 + typedef enum {ARG_NO
63 +  , ARG_STRING
64 +  , ARG_INT
65 + } cmdline_parser_arg_type;
66 +
67 + static
68 + void clear_given (struct gengetopt_args_info *args_info);
69 + static
70 + void clear_args (struct gengetopt_args_info *args_info);
71 +
72 + static int
73 + cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
74 +                        struct cmdline_parser_params *params, const char *additional_error);
75 +
76 + static int
77 + cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
78 +
79 + static char *
80 + gengetopt_strdup (const char *s);
81 +
82 + static
83 + void clear_given (struct gengetopt_args_info *args_info)
84 + {
85 +  args_info->help_given = 0 ;
86 +  args_info->version_given = 0 ;
87 +  args_info->input_given = 0 ;
88 +  args_info->output_given = 0 ;
89 +  args_info->sele1_given = 0 ;
90 +  args_info->sele2_given = 0 ;
91 +  args_info->order_given = 0 ;
92 +  args_info->nzbins_given = 0 ;
93 +  args_info->memory_given = 0 ;
94 +  args_info->selecorr_given = 0 ;
95 +  args_info->rcorr_given = 0 ;
96 +  args_info->vcorr_given = 0 ;
97 +  args_info->dcorr_given = 0 ;
98 +  args_info->lcorr_given = 0 ;
99 +  args_info->lcorrZ_given = 0 ;
100 +  args_info->cohZ_given = 0 ;
101 +  args_info->sdcorr_given = 0 ;
102 +  args_info->r_rcorr_given = 0 ;
103 +  args_info->thetacorr_given = 0 ;
104 +  args_info->drcorr_given = 0 ;
105 +  args_info->helfandEcorr_given = 0 ;
106 +  args_info->momentum_given = 0 ;
107 +  args_info->stresscorr_given = 0 ;
108 +  args_info->dynamicProps_group_counter = 0 ;
109 + }
110 +
111 + static
112 + void clear_args (struct gengetopt_args_info *args_info)
113 + {
114 +  FIX_UNUSED (args_info);
115 +  args_info->input_arg = NULL;
116 +  args_info->input_orig = NULL;
117 +  args_info->output_arg = NULL;
118 +  args_info->output_orig = NULL;
119 +  args_info->sele1_arg = NULL;
120 +  args_info->sele1_orig = NULL;
121 +  args_info->sele2_arg = NULL;
122 +  args_info->sele2_orig = NULL;
123 +  args_info->order_orig = NULL;
124 +  args_info->nzbins_arg = 100;
125 +  args_info->nzbins_orig = NULL;
126 +  args_info->memory_arg = gengetopt_strdup ("2G");
127 +  args_info->memory_orig = NULL;
128 +  
129 + }
130 +
131 + static
132 + void init_args_info(struct gengetopt_args_info *args_info)
133 + {
134 +
135 +
136 +  args_info->help_help = gengetopt_args_info_help[0] ;
137 +  args_info->version_help = gengetopt_args_info_help[1] ;
138 +  args_info->input_help = gengetopt_args_info_help[2] ;
139 +  args_info->output_help = gengetopt_args_info_help[3] ;
140 +  args_info->sele1_help = gengetopt_args_info_help[4] ;
141 +  args_info->sele2_help = gengetopt_args_info_help[5] ;
142 +  args_info->order_help = gengetopt_args_info_help[6] ;
143 +  args_info->nzbins_help = gengetopt_args_info_help[7] ;
144 +  args_info->memory_help = gengetopt_args_info_help[8] ;
145 +  args_info->selecorr_help = gengetopt_args_info_help[10] ;
146 +  args_info->rcorr_help = gengetopt_args_info_help[11] ;
147 +  args_info->vcorr_help = gengetopt_args_info_help[12] ;
148 +  args_info->dcorr_help = gengetopt_args_info_help[13] ;
149 +  args_info->lcorr_help = gengetopt_args_info_help[14] ;
150 +  args_info->lcorrZ_help = gengetopt_args_info_help[15] ;
151 +  args_info->cohZ_help = gengetopt_args_info_help[16] ;
152 +  args_info->sdcorr_help = gengetopt_args_info_help[17] ;
153 +  args_info->r_rcorr_help = gengetopt_args_info_help[18] ;
154 +  args_info->thetacorr_help = gengetopt_args_info_help[19] ;
155 +  args_info->drcorr_help = gengetopt_args_info_help[20] ;
156 +  args_info->helfandEcorr_help = gengetopt_args_info_help[21] ;
157 +  args_info->momentum_help = gengetopt_args_info_help[22] ;
158 +  args_info->stresscorr_help = gengetopt_args_info_help[23] ;
159 +  
160 + }
161 +
162   void
163   cmdline_parser_print_version (void)
164   {
165 <  printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
165 >  printf ("%s %s\n",
166 >     (strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
167 >     CMDLINE_PARSER_VERSION);
168   }
169  
170 + static void print_help_common(void) {
171 +  cmdline_parser_print_version ();
172 +
173 +  if (strlen(gengetopt_args_info_purpose) > 0)
174 +    printf("\n%s\n", gengetopt_args_info_purpose);
175 +
176 +  if (strlen(gengetopt_args_info_usage) > 0)
177 +    printf("\n%s\n", gengetopt_args_info_usage);
178 +
179 +  printf("\n");
180 +
181 +  if (strlen(gengetopt_args_info_description) > 0)
182 +    printf("%s\n\n", gengetopt_args_info_description);
183 + }
184 +
185   void
186   cmdline_parser_print_help (void)
187   {
188 <  cmdline_parser_print_version ();
189 <  printf("\n"
190 <  "Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
191 <  printf("\n");
38 <  printf("  -h, --help                    Print help and exit\n");
39 <  printf("  -V, --version                 Print version and exit\n");
40 <  printf("  -i, --input=filename          input dump file\n");
41 <  printf("  -o, --output=filename         output file name\n");
42 <  printf("      --sele1=selection script  select first stuntdouble set\n");
43 <  printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44 <  printf("      --order=INT               Lengendre Polynomial Order\n");
45 <  printf("\n");
46 <  printf(" Group: dynamicProps  an option of this group is required\n");
47 <  printf("  -r, --rcorr                   rmsd\n");
48 <  printf("  -v, --vcorr                   velocity correlation function\n");
49 <  printf("  -d, --dcorr                   dipole correlation function\n");
50 <  printf("  -l, --lcorr                   Lengendre correlation function\n");
188 >  int i = 0;
189 >  print_help_common();
190 >  while (gengetopt_args_info_help[i])
191 >    printf("%s\n", gengetopt_args_info_help[i++]);
192   }
193  
194 + void
195 + cmdline_parser_init (struct gengetopt_args_info *args_info)
196 + {
197 +  clear_given (args_info);
198 +  clear_args (args_info);
199 +  init_args_info (args_info);
200  
201 < static char *gengetopt_strdup (const char *s);
201 >  args_info->inputs = 0;
202 >  args_info->inputs_num = 0;
203 > }
204  
205 < /* gengetopt_strdup() */
206 < /* strdup.c replacement of strdup, which is not standard */
205 > void
206 > cmdline_parser_params_init(struct cmdline_parser_params *params)
207 > {
208 >  if (params)
209 >    {
210 >      params->override = 0;
211 >      params->initialize = 1;
212 >      params->check_required = 1;
213 >      params->check_ambiguity = 0;
214 >      params->print_errors = 1;
215 >    }
216 > }
217 >
218 > struct cmdline_parser_params *
219 > cmdline_parser_params_create(void)
220 > {
221 >  struct cmdline_parser_params *params =
222 >    (struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
223 >  cmdline_parser_params_init(params);  
224 >  return params;
225 > }
226 >
227 > static void
228 > free_string_field (char **s)
229 > {
230 >  if (*s)
231 >    {
232 >      free (*s);
233 >      *s = 0;
234 >    }
235 > }
236 >
237 >
238 > static void
239 > cmdline_parser_release (struct gengetopt_args_info *args_info)
240 > {
241 >  unsigned int i;
242 >  free_string_field (&(args_info->input_arg));
243 >  free_string_field (&(args_info->input_orig));
244 >  free_string_field (&(args_info->output_arg));
245 >  free_string_field (&(args_info->output_orig));
246 >  free_string_field (&(args_info->sele1_arg));
247 >  free_string_field (&(args_info->sele1_orig));
248 >  free_string_field (&(args_info->sele2_arg));
249 >  free_string_field (&(args_info->sele2_orig));
250 >  free_string_field (&(args_info->order_orig));
251 >  free_string_field (&(args_info->nzbins_orig));
252 >  free_string_field (&(args_info->memory_arg));
253 >  free_string_field (&(args_info->memory_orig));
254 >  
255 >  
256 >  for (i = 0; i < args_info->inputs_num; ++i)
257 >    free (args_info->inputs [i]);
258 >
259 >  if (args_info->inputs_num)
260 >    free (args_info->inputs);
261 >
262 >  clear_given (args_info);
263 > }
264 >
265 >
266 > static void
267 > write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
268 > {
269 >  FIX_UNUSED (values);
270 >  if (arg) {
271 >    fprintf(outfile, "%s=\"%s\"\n", opt, arg);
272 >  } else {
273 >    fprintf(outfile, "%s\n", opt);
274 >  }
275 > }
276 >
277 >
278 > int
279 > cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
280 > {
281 >  int i = 0;
282 >
283 >  if (!outfile)
284 >    {
285 >      fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
286 >      return EXIT_FAILURE;
287 >    }
288 >
289 >  if (args_info->help_given)
290 >    write_into_file(outfile, "help", 0, 0 );
291 >  if (args_info->version_given)
292 >    write_into_file(outfile, "version", 0, 0 );
293 >  if (args_info->input_given)
294 >    write_into_file(outfile, "input", args_info->input_orig, 0);
295 >  if (args_info->output_given)
296 >    write_into_file(outfile, "output", args_info->output_orig, 0);
297 >  if (args_info->sele1_given)
298 >    write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
299 >  if (args_info->sele2_given)
300 >    write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
301 >  if (args_info->order_given)
302 >    write_into_file(outfile, "order", args_info->order_orig, 0);
303 >  if (args_info->nzbins_given)
304 >    write_into_file(outfile, "nzbins", args_info->nzbins_orig, 0);
305 >  if (args_info->memory_given)
306 >    write_into_file(outfile, "memory", args_info->memory_orig, 0);
307 >  if (args_info->selecorr_given)
308 >    write_into_file(outfile, "selecorr", 0, 0 );
309 >  if (args_info->rcorr_given)
310 >    write_into_file(outfile, "rcorr", 0, 0 );
311 >  if (args_info->vcorr_given)
312 >    write_into_file(outfile, "vcorr", 0, 0 );
313 >  if (args_info->dcorr_given)
314 >    write_into_file(outfile, "dcorr", 0, 0 );
315 >  if (args_info->lcorr_given)
316 >    write_into_file(outfile, "lcorr", 0, 0 );
317 >  if (args_info->lcorrZ_given)
318 >    write_into_file(outfile, "lcorrZ", 0, 0 );
319 >  if (args_info->cohZ_given)
320 >    write_into_file(outfile, "cohZ", 0, 0 );
321 >  if (args_info->sdcorr_given)
322 >    write_into_file(outfile, "sdcorr", 0, 0 );
323 >  if (args_info->r_rcorr_given)
324 >    write_into_file(outfile, "r_rcorr", 0, 0 );
325 >  if (args_info->thetacorr_given)
326 >    write_into_file(outfile, "thetacorr", 0, 0 );
327 >  if (args_info->drcorr_given)
328 >    write_into_file(outfile, "drcorr", 0, 0 );
329 >  if (args_info->helfandEcorr_given)
330 >    write_into_file(outfile, "helfandEcorr", 0, 0 );
331 >  if (args_info->momentum_given)
332 >    write_into_file(outfile, "momentum", 0, 0 );
333 >  if (args_info->stresscorr_given)
334 >    write_into_file(outfile, "stresscorr", 0, 0 );
335 >  
336 >
337 >  i = EXIT_SUCCESS;
338 >  return i;
339 > }
340 >
341 > int
342 > cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
343 > {
344 >  FILE *outfile;
345 >  int i = 0;
346 >
347 >  outfile = fopen(filename, "w");
348 >
349 >  if (!outfile)
350 >    {
351 >      fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
352 >      return EXIT_FAILURE;
353 >    }
354 >
355 >  i = cmdline_parser_dump(outfile, args_info);
356 >  fclose (outfile);
357 >
358 >  return i;
359 > }
360 >
361 > void
362 > cmdline_parser_free (struct gengetopt_args_info *args_info)
363 > {
364 >  cmdline_parser_release (args_info);
365 > }
366 >
367 > /** @brief replacement of strdup, which is not standard */
368   char *
369   gengetopt_strdup (const char *s)
370   {
371 <  char *result = (char*)malloc(strlen(s) + 1);
371 >  char *result = 0;
372 >  if (!s)
373 >    return result;
374 >
375 >  result = (char*)malloc(strlen(s) + 1);
376    if (result == (char*)0)
377      return (char*)0;
378    strcpy(result, s);
379    return result;
380   }
381  
382 < int
383 < cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
382 > static void
383 > reset_group_dynamicProps(struct gengetopt_args_info *args_info)
384   {
385 <  int c;        /* Character of the parsed option.  */
386 <  int missing_required_options = 0;
73 <  int dynamicProps_group_counter = 0;
385 >  if (! args_info->dynamicProps_group_counter)
386 >    return;
387    
388 <
76 <  args_info->help_given = 0 ;
77 <  args_info->version_given = 0 ;
78 <  args_info->input_given = 0 ;
79 <  args_info->output_given = 0 ;
80 <  args_info->sele1_given = 0 ;
81 <  args_info->sele2_given = 0 ;
82 <  args_info->order_given = 0 ;
388 >  args_info->selecorr_given = 0 ;
389    args_info->rcorr_given = 0 ;
390    args_info->vcorr_given = 0 ;
391    args_info->dcorr_given = 0 ;
392    args_info->lcorr_given = 0 ;
393 < #define clear_args() { \
394 <  args_info->input_arg = NULL; \
395 <  args_info->output_arg = NULL; \
396 <  args_info->sele1_arg = NULL; \
397 <  args_info->sele2_arg = NULL; \
393 >  args_info->lcorrZ_given = 0 ;
394 >  args_info->cohZ_given = 0 ;
395 >  args_info->sdcorr_given = 0 ;
396 >  args_info->r_rcorr_given = 0 ;
397 >  args_info->thetacorr_given = 0 ;
398 >  args_info->drcorr_given = 0 ;
399 >  args_info->helfandEcorr_given = 0 ;
400 >  args_info->momentum_given = 0 ;
401 >  args_info->stresscorr_given = 0 ;
402 >
403 >  args_info->dynamicProps_group_counter = 0;
404   }
405  
406 <  clear_args();
406 > int
407 > cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
408 > {
409 >  return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
410 > }
411 >
412 > int
413 > cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
414 >                   struct cmdline_parser_params *params)
415 > {
416 >  int result;
417 >  result = cmdline_parser_internal (argc, argv, args_info, params, 0);
418 >
419 >  if (result == EXIT_FAILURE)
420 >    {
421 >      cmdline_parser_free (args_info);
422 >      exit (EXIT_FAILURE);
423 >    }
424 >  
425 >  return result;
426 > }
427 >
428 > int
429 > cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
430 > {
431 >  int result;
432 >  struct cmdline_parser_params params;
433 >  
434 >  params.override = override;
435 >  params.initialize = initialize;
436 >  params.check_required = check_required;
437 >  params.check_ambiguity = 0;
438 >  params.print_errors = 1;
439 >
440 >  result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
441 >
442 >  if (result == EXIT_FAILURE)
443 >    {
444 >      cmdline_parser_free (args_info);
445 >      exit (EXIT_FAILURE);
446 >    }
447 >  
448 >  return result;
449 > }
450 >
451 > int
452 > cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
453 > {
454 >  int result = EXIT_SUCCESS;
455 >
456 >  if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
457 >    result = EXIT_FAILURE;
458 >
459 >  if (result == EXIT_FAILURE)
460 >    {
461 >      cmdline_parser_free (args_info);
462 >      exit (EXIT_FAILURE);
463 >    }
464 >  
465 >  return result;
466 > }
467 >
468 > int
469 > cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
470 > {
471 >  int error = 0;
472 >  FIX_UNUSED (additional_error);
473 >
474 >  /* checks for required options */
475 >  if (! args_info->input_given)
476 >    {
477 >      fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
478 >      error = 1;
479 >    }
480 >  
481 >  if (args_info->dynamicProps_group_counter == 0)
482 >    {
483 >      fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
484 >      error = 1;
485 >    }
486 >  
487 >
488 >  /* checks for dependences among options */
489 >
490 >  return error;
491 > }
492 >
493 >
494 > static char *package_name = 0;
495 >
496 > /**
497 > * @brief updates an option
498 > * @param field the generic pointer to the field to update
499 > * @param orig_field the pointer to the orig field
500 > * @param field_given the pointer to the number of occurrence of this option
501 > * @param prev_given the pointer to the number of occurrence already seen
502 > * @param value the argument for this option (if null no arg was specified)
503 > * @param possible_values the possible values for this option (if specified)
504 > * @param default_value the default value (in case the option only accepts fixed values)
505 > * @param arg_type the type of this option
506 > * @param check_ambiguity @see cmdline_parser_params.check_ambiguity
507 > * @param override @see cmdline_parser_params.override
508 > * @param no_free whether to free a possible previous value
509 > * @param multiple_option whether this is a multiple option
510 > * @param long_opt the corresponding long option
511 > * @param short_opt the corresponding short option (or '-' if none)
512 > * @param additional_error possible further error specification
513 > */
514 > static
515 > int update_arg(void *field, char **orig_field,
516 >               unsigned int *field_given, unsigned int *prev_given,
517 >               char *value, const char *possible_values[],
518 >               const char *default_value,
519 >               cmdline_parser_arg_type arg_type,
520 >               int check_ambiguity, int override,
521 >               int no_free, int multiple_option,
522 >               const char *long_opt, char short_opt,
523 >               const char *additional_error)
524 > {
525 >  char *stop_char = 0;
526 >  const char *val = value;
527 >  int found;
528 >  char **string_field;
529 >  FIX_UNUSED (field);
530 >
531 >  stop_char = 0;
532 >  found = 0;
533 >
534 >  if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
535 >    {
536 >      if (short_opt != '-')
537 >        fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
538 >               package_name, long_opt, short_opt,
539 >               (additional_error ? additional_error : ""));
540 >      else
541 >        fprintf (stderr, "%s: `--%s' option given more than once%s\n",
542 >               package_name, long_opt,
543 >               (additional_error ? additional_error : ""));
544 >      return 1; /* failure */
545 >    }
546 >
547 >  FIX_UNUSED (default_value);
548 >    
549 >  if (field_given && *field_given && ! override)
550 >    return 0;
551 >  if (prev_given)
552 >    (*prev_given)++;
553 >  if (field_given)
554 >    (*field_given)++;
555 >  if (possible_values)
556 >    val = possible_values[found];
557 >
558 >  switch(arg_type) {
559 >  case ARG_INT:
560 >    if (val) *((int *)field) = strtol (val, &stop_char, 0);
561 >    break;
562 >  case ARG_STRING:
563 >    if (val) {
564 >      string_field = (char **)field;
565 >      if (!no_free && *string_field)
566 >        free (*string_field); /* free previous string */
567 >      *string_field = gengetopt_strdup (val);
568 >    }
569 >    break;
570 >  default:
571 >    break;
572 >  };
573  
574 +  /* check numeric conversion */
575 +  switch(arg_type) {
576 +  case ARG_INT:
577 +    if (val && !(stop_char && *stop_char == '\0')) {
578 +      fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
579 +      return 1; /* failure */
580 +    }
581 +    break;
582 +  default:
583 +    ;
584 +  };
585 +
586 +  /* store the original value */
587 +  switch(arg_type) {
588 +  case ARG_NO:
589 +    break;
590 +  default:
591 +    if (value && orig_field) {
592 +      if (no_free) {
593 +        *orig_field = value;
594 +      } else {
595 +        if (*orig_field)
596 +          free (*orig_field); /* free previous string */
597 +        *orig_field = gengetopt_strdup (value);
598 +      }
599 +    }
600 +  };
601 +
602 +  return 0; /* OK */
603 + }
604 +
605 +
606 + int
607 + cmdline_parser_internal (
608 +  int argc, char **argv, struct gengetopt_args_info *args_info,
609 +                        struct cmdline_parser_params *params, const char *additional_error)
610 + {
611 +  int c;        /* Character of the parsed option.  */
612 +
613 +  int error = 0;
614 +  struct gengetopt_args_info local_args_info;
615 +  
616 +  int override;
617 +  int initialize;
618 +  int check_required;
619 +  int check_ambiguity;
620 +  
621 +  package_name = argv[0];
622 +  
623 +  override = params->override;
624 +  initialize = params->initialize;
625 +  check_required = params->check_required;
626 +  check_ambiguity = params->check_ambiguity;
627 +
628 +  if (initialize)
629 +    cmdline_parser_init (args_info);
630 +
631 +  cmdline_parser_init (&local_args_info);
632 +
633    optarg = 0;
634 <  optind = 1;
635 <  opterr = 1;
634 >  optind = 0;
635 >  opterr = params->print_errors;
636    optopt = '?';
637  
638    while (1)
639      {
640        int option_index = 0;
104      char *stop_char;
641  
642        static struct option long_options[] = {
643          { "help",       0, NULL, 'h' },
# Line 111 | Line 647 | cmdline_parser (int argc, char * const *argv, struct g
647          { "sele1",      1, NULL, 0 },
648          { "sele2",      1, NULL, 0 },
649          { "order",      1, NULL, 0 },
650 +        { "nzbins",     1, NULL, 'z' },
651 +        { "memory",     1, NULL, 'm' },
652 +        { "selecorr",   0, NULL, 's' },
653          { "rcorr",      0, NULL, 'r' },
654          { "vcorr",      0, NULL, 'v' },
655          { "dcorr",      0, NULL, 'd' },
656          { "lcorr",      0, NULL, 'l' },
657 <        { NULL, 0, NULL, 0 }
657 >        { "lcorrZ",     0, NULL, 0 },
658 >        { "cohZ",       0, NULL, 0 },
659 >        { "sdcorr",     0, NULL, 'M' },
660 >        { "r_rcorr",    0, NULL, 0 },
661 >        { "thetacorr",  0, NULL, 0 },
662 >        { "drcorr",     0, NULL, 0 },
663 >        { "helfandEcorr",       0, NULL, 0 },
664 >        { "momentum",   0, NULL, 'p' },
665 >        { "stresscorr", 0, NULL, 0 },
666 >        { 0,  0, 0, 0 }
667        };
668  
669 <      stop_char = 0;
122 <      c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index);
669 >      c = getopt_long (argc, argv, "hVi:o:z:m:srvdlMp", long_options, &option_index);
670  
671        if (c == -1) break;       /* Exit from `while (1)' loop.  */
672  
673        switch (c)
674          {
675          case 'h':       /* Print help and exit.  */
129          clear_args ();
676            cmdline_parser_print_help ();
677 +          cmdline_parser_free (&local_args_info);
678            exit (EXIT_SUCCESS);
679  
680          case 'V':       /* Print version and exit.  */
134          clear_args ();
681            cmdline_parser_print_version ();
682 +          cmdline_parser_free (&local_args_info);
683            exit (EXIT_SUCCESS);
684  
685          case 'i':       /* input dump file.  */
686 <          if (args_info->input_given)
687 <            {
688 <              fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
689 <              clear_args ();
690 <              exit (EXIT_FAILURE);
691 <            }
692 <          args_info->input_given = 1;
693 <          args_info->input_arg = gengetopt_strdup (optarg);
686 >        
687 >        
688 >          if (update_arg( (void *)&(args_info->input_arg),
689 >               &(args_info->input_orig), &(args_info->input_given),
690 >              &(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
691 >              check_ambiguity, override, 0, 0,
692 >              "input", 'i',
693 >              additional_error))
694 >            goto failure;
695 >        
696            break;
148
697          case 'o':       /* output file name.  */
698 <          if (args_info->output_given)
699 <            {
700 <              fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
701 <              clear_args ();
702 <              exit (EXIT_FAILURE);
703 <            }
704 <          args_info->output_given = 1;
705 <          args_info->output_arg = gengetopt_strdup (optarg);
698 >        
699 >        
700 >          if (update_arg( (void *)&(args_info->output_arg),
701 >               &(args_info->output_orig), &(args_info->output_given),
702 >              &(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
703 >              check_ambiguity, override, 0, 0,
704 >              "output", 'o',
705 >              additional_error))
706 >            goto failure;
707 >        
708            break;
709 <
709 >        case 'z':       /* Number of Z bins.  */
710 >        
711 >        
712 >          if (update_arg( (void *)&(args_info->nzbins_arg),
713 >               &(args_info->nzbins_orig), &(args_info->nzbins_given),
714 >              &(local_args_info.nzbins_given), optarg, 0, "100", ARG_INT,
715 >              check_ambiguity, override, 0, 0,
716 >              "nzbins", 'z',
717 >              additional_error))
718 >            goto failure;
719 >        
720 >          break;
721 >        case 'm':       /* Available memory (defaults to 2G).  */
722 >        
723 >        
724 >          if (update_arg( (void *)&(args_info->memory_arg),
725 >               &(args_info->memory_orig), &(args_info->memory_given),
726 >              &(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
727 >              check_ambiguity, override, 0, 0,
728 >              "memory", 'm',
729 >              additional_error))
730 >            goto failure;
731 >        
732 >          break;
733 >        case 's':       /* selection correlation function.  */
734 >        
735 >          if (args_info->dynamicProps_group_counter && override)
736 >            reset_group_dynamicProps (args_info);
737 >          args_info->dynamicProps_group_counter += 1;
738 >        
739 >          if (update_arg( 0 ,
740 >               0 , &(args_info->selecorr_given),
741 >              &(local_args_info.selecorr_given), optarg, 0, 0, ARG_NO,
742 >              check_ambiguity, override, 0, 0,
743 >              "selecorr", 's',
744 >              additional_error))
745 >            goto failure;
746 >        
747 >          break;
748          case 'r':       /* rmsd.  */
749 <          if (args_info->rcorr_given)
750 <            {
751 <              fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
752 <              clear_args ();
753 <              exit (EXIT_FAILURE);
754 <            }
755 <          args_info->rcorr_given = 1;
756 <          dynamicProps_group_counter += 1;
757 <        break;
758 <
749 >        
750 >          if (args_info->dynamicProps_group_counter && override)
751 >            reset_group_dynamicProps (args_info);
752 >          args_info->dynamicProps_group_counter += 1;
753 >        
754 >          if (update_arg( 0 ,
755 >               0 , &(args_info->rcorr_given),
756 >              &(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
757 >              check_ambiguity, override, 0, 0,
758 >              "rcorr", 'r',
759 >              additional_error))
760 >            goto failure;
761 >        
762 >          break;
763          case 'v':       /* velocity correlation function.  */
764 <          if (args_info->vcorr_given)
765 <            {
766 <              fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
767 <              clear_args ();
768 <              exit (EXIT_FAILURE);
769 <            }
770 <          args_info->vcorr_given = 1;
771 <          dynamicProps_group_counter += 1;
772 <        break;
773 <
764 >        
765 >          if (args_info->dynamicProps_group_counter && override)
766 >            reset_group_dynamicProps (args_info);
767 >          args_info->dynamicProps_group_counter += 1;
768 >        
769 >          if (update_arg( 0 ,
770 >               0 , &(args_info->vcorr_given),
771 >              &(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
772 >              check_ambiguity, override, 0, 0,
773 >              "vcorr", 'v',
774 >              additional_error))
775 >            goto failure;
776 >        
777 >          break;
778          case 'd':       /* dipole correlation function.  */
779 <          if (args_info->dcorr_given)
780 <            {
781 <              fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
782 <              clear_args ();
783 <              exit (EXIT_FAILURE);
784 <            }
785 <          args_info->dcorr_given = 1;
786 <          dynamicProps_group_counter += 1;
787 <        break;
788 <
779 >        
780 >          if (args_info->dynamicProps_group_counter && override)
781 >            reset_group_dynamicProps (args_info);
782 >          args_info->dynamicProps_group_counter += 1;
783 >        
784 >          if (update_arg( 0 ,
785 >               0 , &(args_info->dcorr_given),
786 >              &(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
787 >              check_ambiguity, override, 0, 0,
788 >              "dcorr", 'd',
789 >              additional_error))
790 >            goto failure;
791 >        
792 >          break;
793          case 'l':       /* Lengendre correlation function.  */
794 <          if (args_info->lcorr_given)
795 <            {
796 <              fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
797 <              clear_args ();
798 <              exit (EXIT_FAILURE);
799 <            }
800 <          args_info->lcorr_given = 1;
801 <          dynamicProps_group_counter += 1;
802 <        break;
803 <
794 >        
795 >          if (args_info->dynamicProps_group_counter && override)
796 >            reset_group_dynamicProps (args_info);
797 >          args_info->dynamicProps_group_counter += 1;
798 >        
799 >          if (update_arg( 0 ,
800 >               0 , &(args_info->lcorr_given),
801 >              &(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
802 >              check_ambiguity, override, 0, 0,
803 >              "lcorr", 'l',
804 >              additional_error))
805 >            goto failure;
806 >        
807 >          break;
808 >        case 'M':       /* System dipole correlation function.  */
809 >        
810 >          if (args_info->dynamicProps_group_counter && override)
811 >            reset_group_dynamicProps (args_info);
812 >          args_info->dynamicProps_group_counter += 1;
813 >        
814 >          if (update_arg( 0 ,
815 >               0 , &(args_info->sdcorr_given),
816 >              &(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
817 >              check_ambiguity, override, 0, 0,
818 >              "sdcorr", 'M',
819 >              additional_error))
820 >            goto failure;
821 >        
822 >          break;
823 >        case 'p':       /* Helfand momentum for viscosity.  */
824 >        
825 >          if (args_info->dynamicProps_group_counter && override)
826 >            reset_group_dynamicProps (args_info);
827 >          args_info->dynamicProps_group_counter += 1;
828 >        
829 >          if (update_arg( 0 ,
830 >               0 , &(args_info->momentum_given),
831 >              &(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
832 >              check_ambiguity, override, 0, 0,
833 >              "momentum", 'p',
834 >              additional_error))
835 >            goto failure;
836 >        
837 >          break;
838  
839          case 0: /* Long option with no short option */
840            /* select first stuntdouble set.  */
841            if (strcmp (long_options[option_index].name, "sele1") == 0)
842            {
209            if (args_info->sele1_given)
210              {
211                fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
212                clear_args ();
213                exit (EXIT_FAILURE);
214              }
215            args_info->sele1_given = 1;
216            args_info->sele1_arg = gengetopt_strdup (optarg);
217            break;
218          }
843            
844 +          
845 +            if (update_arg( (void *)&(args_info->sele1_arg),
846 +                 &(args_info->sele1_orig), &(args_info->sele1_given),
847 +                &(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
848 +                check_ambiguity, override, 0, 0,
849 +                "sele1", '-',
850 +                additional_error))
851 +              goto failure;
852 +          
853 +          }
854            /* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
855            else if (strcmp (long_options[option_index].name, "sele2") == 0)
856            {
223            if (args_info->sele2_given)
224              {
225                fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
226                clear_args ();
227                exit (EXIT_FAILURE);
228              }
229            args_info->sele2_given = 1;
230            args_info->sele2_arg = gengetopt_strdup (optarg);
231            break;
232          }
857            
858 +          
859 +            if (update_arg( (void *)&(args_info->sele2_arg),
860 +                 &(args_info->sele2_orig), &(args_info->sele2_given),
861 +                &(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
862 +                check_ambiguity, override, 0, 0,
863 +                "sele2", '-',
864 +                additional_error))
865 +              goto failure;
866 +          
867 +          }
868            /* Lengendre Polynomial Order.  */
869            else if (strcmp (long_options[option_index].name, "order") == 0)
870            {
871 <            if (args_info->order_given)
872 <              {
873 <                fprintf (stderr, "%s: `--order' option given more than once\n", CMDLINE_PARSER_PACKAGE);
874 <                clear_args ();
875 <                exit (EXIT_FAILURE);
876 <              }
877 <            args_info->order_given = 1;
878 <            args_info->order_arg = strtol (optarg,&stop_char,0);
879 <            break;
871 >          
872 >          
873 >            if (update_arg( (void *)&(args_info->order_arg),
874 >                 &(args_info->order_orig), &(args_info->order_given),
875 >                &(local_args_info.order_given), optarg, 0, 0, ARG_INT,
876 >                check_ambiguity, override, 0, 0,
877 >                "order", '-',
878 >                additional_error))
879 >              goto failure;
880 >          
881            }
882 +          /* Lengendre correlation function binned by Z.  */
883 +          else if (strcmp (long_options[option_index].name, "lcorrZ") == 0)
884 +          {
885            
886 <
886 >            if (args_info->dynamicProps_group_counter && override)
887 >              reset_group_dynamicProps (args_info);
888 >            args_info->dynamicProps_group_counter += 1;
889 >          
890 >            if (update_arg( 0 ,
891 >                 0 , &(args_info->lcorrZ_given),
892 >                &(local_args_info.lcorrZ_given), optarg, 0, 0, ARG_NO,
893 >                check_ambiguity, override, 0, 0,
894 >                "lcorrZ", '-',
895 >                additional_error))
896 >              goto failure;
897 >          
898 >          }
899 >          /* Lengendre correlation function for OH bond vectors binned by Z.  */
900 >          else if (strcmp (long_options[option_index].name, "cohZ") == 0)
901 >          {
902 >          
903 >            if (args_info->dynamicProps_group_counter && override)
904 >              reset_group_dynamicProps (args_info);
905 >            args_info->dynamicProps_group_counter += 1;
906 >          
907 >            if (update_arg( 0 ,
908 >                 0 , &(args_info->cohZ_given),
909 >                &(local_args_info.cohZ_given), optarg, 0, 0, ARG_NO,
910 >                check_ambiguity, override, 0, 0,
911 >                "cohZ", '-',
912 >                additional_error))
913 >              goto failure;
914 >          
915 >          }
916 >          /* Radial rmsd.  */
917 >          else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
918 >          {
919 >          
920 >            if (args_info->dynamicProps_group_counter && override)
921 >              reset_group_dynamicProps (args_info);
922 >            args_info->dynamicProps_group_counter += 1;
923 >          
924 >            if (update_arg( 0 ,
925 >                 0 , &(args_info->r_rcorr_given),
926 >                &(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
927 >                check_ambiguity, override, 0, 0,
928 >                "r_rcorr", '-',
929 >                additional_error))
930 >              goto failure;
931 >          
932 >          }
933 >          /* Angular rmsd.  */
934 >          else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
935 >          {
936 >          
937 >            if (args_info->dynamicProps_group_counter && override)
938 >              reset_group_dynamicProps (args_info);
939 >            args_info->dynamicProps_group_counter += 1;
940 >          
941 >            if (update_arg( 0 ,
942 >                 0 , &(args_info->thetacorr_given),
943 >                &(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
944 >                check_ambiguity, override, 0, 0,
945 >                "thetacorr", '-',
946 >                additional_error))
947 >              goto failure;
948 >          
949 >          }
950 >          /* Directional rmsd for particles with unit vectors.  */
951 >          else if (strcmp (long_options[option_index].name, "drcorr") == 0)
952 >          {
953 >          
954 >            if (args_info->dynamicProps_group_counter && override)
955 >              reset_group_dynamicProps (args_info);
956 >            args_info->dynamicProps_group_counter += 1;
957 >          
958 >            if (update_arg( 0 ,
959 >                 0 , &(args_info->drcorr_given),
960 >                &(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
961 >                check_ambiguity, override, 0, 0,
962 >                "drcorr", '-',
963 >                additional_error))
964 >              goto failure;
965 >          
966 >          }
967 >          /* Helfand moment for thermal conductvity.  */
968 >          else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
969 >          {
970 >          
971 >            if (args_info->dynamicProps_group_counter && override)
972 >              reset_group_dynamicProps (args_info);
973 >            args_info->dynamicProps_group_counter += 1;
974 >          
975 >            if (update_arg( 0 ,
976 >                 0 , &(args_info->helfandEcorr_given),
977 >                &(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
978 >                check_ambiguity, override, 0, 0,
979 >                "helfandEcorr", '-',
980 >                additional_error))
981 >              goto failure;
982 >          
983 >          }
984 >          /* Stress tensor correlation function.  */
985 >          else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
986 >          {
987 >          
988 >            if (args_info->dynamicProps_group_counter && override)
989 >              reset_group_dynamicProps (args_info);
990 >            args_info->dynamicProps_group_counter += 1;
991 >          
992 >            if (update_arg( 0 ,
993 >                 0 , &(args_info->stresscorr_given),
994 >                &(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
995 >                check_ambiguity, override, 0, 0,
996 >                "stresscorr", '-',
997 >                additional_error))
998 >              goto failure;
999 >          
1000 >          }
1001 >          
1002 >          break;
1003          case '?':       /* Invalid option.  */
1004            /* `getopt_long' already printed an error message.  */
1005 <          exit (EXIT_FAILURE);
1005 >          goto failure;
1006  
1007          default:        /* bug: option not considered.  */
1008 <          fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
1008 >          fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
1009            abort ();
1010          } /* switch */
1011      } /* while */
1012  
1013 <  if ( dynamicProps_group_counter != 1)
1013 >  if (args_info->dynamicProps_group_counter > 1)
1014      {
1015 <      fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
1016 <      missing_required_options = 1;
1015 >      fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
1016 >      error = 1;
1017      }
1018    
1019  
1020 <  if (! args_info->input_given)
1020 >
1021 >  if (check_required)
1022      {
1023 <      fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
269 <      missing_required_options = 1;
1023 >      error += cmdline_parser_required2 (args_info, argv[0], additional_error);
1024      }
271  if ( missing_required_options )
272    exit (EXIT_FAILURE);
1025  
1026 +  cmdline_parser_release (&local_args_info);
1027 +
1028 +  if ( error )
1029 +    return (EXIT_FAILURE);
1030 +
1031 +  if (optind < argc)
1032 +    {
1033 +      int i = 0 ;
1034 +      int found_prog_name = 0;
1035 +      /* whether program name, i.e., argv[0], is in the remaining args
1036 +         (this may happen with some implementations of getopt,
1037 +          but surely not with the one included by gengetopt) */
1038 +
1039 +      i = optind;
1040 +      while (i < argc)
1041 +        if (argv[i++] == argv[0]) {
1042 +          found_prog_name = 1;
1043 +          break;
1044 +        }
1045 +      i = 0;
1046 +
1047 +      args_info->inputs_num = argc - optind - found_prog_name;
1048 +      args_info->inputs =
1049 +        (char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
1050 +      while (optind < argc)
1051 +        if (argv[optind++] != argv[0])
1052 +          args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
1053 +    }
1054 +
1055    return 0;
1056 +
1057 + failure:
1058 +  
1059 +  cmdline_parser_release (&local_args_info);
1060 +  return (EXIT_FAILURE);
1061   }

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords), Revision 876 by tim, Mon Jan 30 22:25:27 2006 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (property svn:keywords), Revision 1934 by gezelter, Mon Aug 26 14:15:09 2013 UTC

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