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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents), Revision 916 by tim, Fri Mar 24 16:49:09 2006 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (file contents), Revision 1915 by gezelter, Mon Jul 29 17:55:17 2013 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F DynamicPropsCmd
4	>	gengetopt --file-name=DynamicPropsCmd --unamed-opts
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#include <getopt.h>
25
26		#include "DynamicPropsCmd.h"
27
28	+	const char *gengetopt_args_info_purpose = "";
29	+
30	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31	+
32	+	const char *gengetopt_args_info_description = "";
33	+
34	+	const char *gengetopt_args_info_help[] = {
35	+	"  -h, --help                    Print help and exit",
36	+	"  -V, --version                 Print version and exit",
37	+	"  -i, --input=filename          input dump file",
38	+	"  -o, --output=filename         output file name",
39	+	"      --sele1=selection script  select first stuntdouble set",
40	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41	+	"      --order=INT               Lengendre Polynomial Order",
42	+	"  -z, --nzbins=INT              Number of Z bins  (default=`100')",
43	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
44	+	"\n Group: dynamicProps\n   an option of this group is required",
45	+	"  -s, --selecorr                selection correlation function",
46	+	"  -r, --rcorr                   rmsd",
47	+	"  -v, --vcorr                   velocity correlation function",
48	+	"  -d, --dcorr                   dipole correlation function",
49	+	"  -l, --lcorr                   Lengendre correlation function",
50	+	"      --lcorrZ                  Lengendre correlation function binned by Z",
51	+	"  -M, --sdcorr                  System dipole correlation function",
52	+	"      --r_rcorr                 Radial rmsd",
53	+	"      --thetacorr               Angular rmsd",
54	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
55	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
56	+	"  -p, --momentum                Helfand momentum for viscosity",
57	+	"      --stresscorr              Stress tensor correlation function",
58	+	0
59	+	};
60	+
61	+	typedef enum {ARG_NO
62	+	, ARG_STRING
63	+	, ARG_INT
64	+	} cmdline_parser_arg_type;
65	+
66	+	static
67	+	void clear_given (struct gengetopt_args_info *args_info);
68	+	static
69	+	void clear_args (struct gengetopt_args_info *args_info);
70	+
71	+	static int
72	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
73	+	struct cmdline_parser_params *params, const char *additional_error);
74	+
75	+	static int
76	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
77	+
78	+	static char *
79	+	gengetopt_strdup (const char *s);
80	+
81	+	static
82	+	void clear_given (struct gengetopt_args_info *args_info)
83	+	{
84	+	args_info->help_given = 0 ;
85	+	args_info->version_given = 0 ;
86	+	args_info->input_given = 0 ;
87	+	args_info->output_given = 0 ;
88	+	args_info->sele1_given = 0 ;
89	+	args_info->sele2_given = 0 ;
90	+	args_info->order_given = 0 ;
91	+	args_info->nzbins_given = 0 ;
92	+	args_info->memory_given = 0 ;
93	+	args_info->selecorr_given = 0 ;
94	+	args_info->rcorr_given = 0 ;
95	+	args_info->vcorr_given = 0 ;
96	+	args_info->dcorr_given = 0 ;
97	+	args_info->lcorr_given = 0 ;
98	+	args_info->lcorrZ_given = 0 ;
99	+	args_info->sdcorr_given = 0 ;
100	+	args_info->r_rcorr_given = 0 ;
101	+	args_info->thetacorr_given = 0 ;
102	+	args_info->drcorr_given = 0 ;
103	+	args_info->helfandEcorr_given = 0 ;
104	+	args_info->momentum_given = 0 ;
105	+	args_info->stresscorr_given = 0 ;
106	+	args_info->dynamicProps_group_counter = 0 ;
107	+	}
108	+
109	+	static
110	+	void clear_args (struct gengetopt_args_info *args_info)
111	+	{
112	+	FIX_UNUSED (args_info);
113	+	args_info->input_arg = NULL;
114	+	args_info->input_orig = NULL;
115	+	args_info->output_arg = NULL;
116	+	args_info->output_orig = NULL;
117	+	args_info->sele1_arg = NULL;
118	+	args_info->sele1_orig = NULL;
119	+	args_info->sele2_arg = NULL;
120	+	args_info->sele2_orig = NULL;
121	+	args_info->order_orig = NULL;
122	+	args_info->nzbins_arg = 100;
123	+	args_info->nzbins_orig = NULL;
124	+	args_info->memory_arg = gengetopt_strdup ("2G");
125	+	args_info->memory_orig = NULL;
126	+
127	+	}
128	+
129	+	static
130	+	void init_args_info(struct gengetopt_args_info *args_info)
131	+	{
132	+
133	+
134	+	args_info->help_help = gengetopt_args_info_help[0] ;
135	+	args_info->version_help = gengetopt_args_info_help[1] ;
136	+	args_info->input_help = gengetopt_args_info_help[2] ;
137	+	args_info->output_help = gengetopt_args_info_help[3] ;
138	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
139	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
140	+	args_info->order_help = gengetopt_args_info_help[6] ;
141	+	args_info->nzbins_help = gengetopt_args_info_help[7] ;
142	+	args_info->memory_help = gengetopt_args_info_help[8] ;
143	+	args_info->selecorr_help = gengetopt_args_info_help[10] ;
144	+	args_info->rcorr_help = gengetopt_args_info_help[11] ;
145	+	args_info->vcorr_help = gengetopt_args_info_help[12] ;
146	+	args_info->dcorr_help = gengetopt_args_info_help[13] ;
147	+	args_info->lcorr_help = gengetopt_args_info_help[14] ;
148	+	args_info->lcorrZ_help = gengetopt_args_info_help[15] ;
149	+	args_info->sdcorr_help = gengetopt_args_info_help[16] ;
150	+	args_info->r_rcorr_help = gengetopt_args_info_help[17] ;
151	+	args_info->thetacorr_help = gengetopt_args_info_help[18] ;
152	+	args_info->drcorr_help = gengetopt_args_info_help[19] ;
153	+	args_info->helfandEcorr_help = gengetopt_args_info_help[20] ;
154	+	args_info->momentum_help = gengetopt_args_info_help[21] ;
155	+	args_info->stresscorr_help = gengetopt_args_info_help[22] ;
156	+
157	+	}
158	+
159		void
160		cmdline_parser_print_version (void)
161		{
162	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
162	>	printf ("%s %s\n",
163	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
164	>	CMDLINE_PARSER_VERSION);
165		}
166
167	+	static void print_help_common(void) {
168	+	cmdline_parser_print_version ();
169	+
170	+	if (strlen(gengetopt_args_info_purpose) > 0)
171	+	printf("\n%s\n", gengetopt_args_info_purpose);
172	+
173	+	if (strlen(gengetopt_args_info_usage) > 0)
174	+	printf("\n%s\n", gengetopt_args_info_usage);
175	+
176	+	printf("\n");
177	+
178	+	if (strlen(gengetopt_args_info_description) > 0)
179	+	printf("%s\n\n", gengetopt_args_info_description);
180	+	}
181	+
182		void
183		cmdline_parser_print_help (void)
184		{
185	<	cmdline_parser_print_version ();
186	<	printf("\n"
187	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
188	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("      --order=INT               Lengendre Polynomial Order\n");
45	<	printf("\n");
46	<	printf(" Group: dynamicProps  an option of this group is required\n");
47	<	printf("  -m, --rmsd                    rmsd\n");
48	<	printf("  -r, --rcorr                   position correlation function\n");
49	<	printf("  -v, --vcorr                   velocity correlation function\n");
50	<	printf("  -d, --dcorr                   dipole correlation function\n");
51	<	printf("  -l, --lcorr                   Lengendre correlation function\n");
185	>	int i = 0;
186	>	print_help_common();
187	>	while (gengetopt_args_info_help[i])
188	>	printf("%s\n", gengetopt_args_info_help[i++]);
189		}
190
191	+	void
192	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
193	+	{
194	+	clear_given (args_info);
195	+	clear_args (args_info);
196	+	init_args_info (args_info);
197
198	<	static char *gengetopt_strdup (const char *s);
198	>	args_info->inputs = 0;
199	>	args_info->inputs_num = 0;
200	>	}
201
202	<	/* gengetopt_strdup() */
203	<	/* strdup.c replacement of strdup, which is not standard */
202	>	void
203	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
204	>	{
205	>	if (params)
206	>	{
207	>	params->override = 0;
208	>	params->initialize = 1;
209	>	params->check_required = 1;
210	>	params->check_ambiguity = 0;
211	>	params->print_errors = 1;
212	>	}
213	>	}
214	>
215	>	struct cmdline_parser_params *
216	>	cmdline_parser_params_create(void)
217	>	{
218	>	struct cmdline_parser_params *params =
219	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
220	>	cmdline_parser_params_init(params);
221	>	return params;
222	>	}
223	>
224	>	static void
225	>	free_string_field (char **s)
226	>	{
227	>	if (*s)
228	>	{
229	>	free (*s);
230	>	*s = 0;
231	>	}
232	>	}
233	>
234	>
235	>	static void
236	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
237	>	{
238	>	unsigned int i;
239	>	free_string_field (&(args_info->input_arg));
240	>	free_string_field (&(args_info->input_orig));
241	>	free_string_field (&(args_info->output_arg));
242	>	free_string_field (&(args_info->output_orig));
243	>	free_string_field (&(args_info->sele1_arg));
244	>	free_string_field (&(args_info->sele1_orig));
245	>	free_string_field (&(args_info->sele2_arg));
246	>	free_string_field (&(args_info->sele2_orig));
247	>	free_string_field (&(args_info->order_orig));
248	>	free_string_field (&(args_info->nzbins_orig));
249	>	free_string_field (&(args_info->memory_arg));
250	>	free_string_field (&(args_info->memory_orig));
251	>
252	>
253	>	for (i = 0; i < args_info->inputs_num; ++i)
254	>	free (args_info->inputs [i]);
255	>
256	>	if (args_info->inputs_num)
257	>	free (args_info->inputs);
258	>
259	>	clear_given (args_info);
260	>	}
261	>
262	>
263	>	static void
264	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
265	>	{
266	>	FIX_UNUSED (values);
267	>	if (arg) {
268	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
269	>	} else {
270	>	fprintf(outfile, "%s\n", opt);
271	>	}
272	>	}
273	>
274	>
275	>	int
276	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
277	>	{
278	>	int i = 0;
279	>
280	>	if (!outfile)
281	>	{
282	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
283	>	return EXIT_FAILURE;
284	>	}
285	>
286	>	if (args_info->help_given)
287	>	write_into_file(outfile, "help", 0, 0 );
288	>	if (args_info->version_given)
289	>	write_into_file(outfile, "version", 0, 0 );
290	>	if (args_info->input_given)
291	>	write_into_file(outfile, "input", args_info->input_orig, 0);
292	>	if (args_info->output_given)
293	>	write_into_file(outfile, "output", args_info->output_orig, 0);
294	>	if (args_info->sele1_given)
295	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
296	>	if (args_info->sele2_given)
297	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
298	>	if (args_info->order_given)
299	>	write_into_file(outfile, "order", args_info->order_orig, 0);
300	>	if (args_info->nzbins_given)
301	>	write_into_file(outfile, "nzbins", args_info->nzbins_orig, 0);
302	>	if (args_info->memory_given)
303	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
304	>	if (args_info->selecorr_given)
305	>	write_into_file(outfile, "selecorr", 0, 0 );
306	>	if (args_info->rcorr_given)
307	>	write_into_file(outfile, "rcorr", 0, 0 );
308	>	if (args_info->vcorr_given)
309	>	write_into_file(outfile, "vcorr", 0, 0 );
310	>	if (args_info->dcorr_given)
311	>	write_into_file(outfile, "dcorr", 0, 0 );
312	>	if (args_info->lcorr_given)
313	>	write_into_file(outfile, "lcorr", 0, 0 );
314	>	if (args_info->lcorrZ_given)
315	>	write_into_file(outfile, "lcorrZ", 0, 0 );
316	>	if (args_info->sdcorr_given)
317	>	write_into_file(outfile, "sdcorr", 0, 0 );
318	>	if (args_info->r_rcorr_given)
319	>	write_into_file(outfile, "r_rcorr", 0, 0 );
320	>	if (args_info->thetacorr_given)
321	>	write_into_file(outfile, "thetacorr", 0, 0 );
322	>	if (args_info->drcorr_given)
323	>	write_into_file(outfile, "drcorr", 0, 0 );
324	>	if (args_info->helfandEcorr_given)
325	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
326	>	if (args_info->momentum_given)
327	>	write_into_file(outfile, "momentum", 0, 0 );
328	>	if (args_info->stresscorr_given)
329	>	write_into_file(outfile, "stresscorr", 0, 0 );
330	>
331	>
332	>	i = EXIT_SUCCESS;
333	>	return i;
334	>	}
335	>
336	>	int
337	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
338	>	{
339	>	FILE *outfile;
340	>	int i = 0;
341	>
342	>	outfile = fopen(filename, "w");
343	>
344	>	if (!outfile)
345	>	{
346	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
347	>	return EXIT_FAILURE;
348	>	}
349	>
350	>	i = cmdline_parser_dump(outfile, args_info);
351	>	fclose (outfile);
352	>
353	>	return i;
354	>	}
355	>
356	>	void
357	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
358	>	{
359	>	cmdline_parser_release (args_info);
360	>	}
361	>
362	>	/** @brief replacement of strdup, which is not standard */
363		char *
364		gengetopt_strdup (const char *s)
365		{
366	<	char *result = (char*)malloc(strlen(s) + 1);
366	>	char *result = 0;
367	>	if (!s)
368	>	return result;
369	>
370	>	result = (char*)malloc(strlen(s) + 1);
371		if (result == (char*)0)
372		return (char*)0;
373		strcpy(result, s);
374		return result;
375		}
376
377	<	int
378	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
377	>	static void
378	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
379		{
380	<	int c;        /* Character of the parsed option.  */
381	<	int missing_required_options = 0;
74	<	int dynamicProps_group_counter = 0;
380	>	if (! args_info->dynamicProps_group_counter)
381	>	return;
382
383	<
77	<	args_info->help_given = 0 ;
78	<	args_info->version_given = 0 ;
79	<	args_info->input_given = 0 ;
80	<	args_info->output_given = 0 ;
81	<	args_info->sele1_given = 0 ;
82	<	args_info->sele2_given = 0 ;
83	<	args_info->order_given = 0 ;
84	<	args_info->rmsd_given = 0 ;
383	>	args_info->selecorr_given = 0 ;
384		args_info->rcorr_given = 0 ;
385		args_info->vcorr_given = 0 ;
386		args_info->dcorr_given = 0 ;
387		args_info->lcorr_given = 0 ;
388	<	#define clear_args() { \
389	<	args_info->input_arg = NULL; \
390	<	args_info->output_arg = NULL; \
391	<	args_info->sele1_arg = NULL; \
392	<	args_info->sele2_arg = NULL; \
388	>	args_info->lcorrZ_given = 0 ;
389	>	args_info->sdcorr_given = 0 ;
390	>	args_info->r_rcorr_given = 0 ;
391	>	args_info->thetacorr_given = 0 ;
392	>	args_info->drcorr_given = 0 ;
393	>	args_info->helfandEcorr_given = 0 ;
394	>	args_info->momentum_given = 0 ;
395	>	args_info->stresscorr_given = 0 ;
396	>
397	>	args_info->dynamicProps_group_counter = 0;
398		}
399
400	<	clear_args();
400	>	int
401	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
402	>	{
403	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
404	>	}
405	>
406	>	int
407	>	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
408	>	struct cmdline_parser_params *params)
409	>	{
410	>	int result;
411	>	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
412	>
413	>	if (result == EXIT_FAILURE)
414	>	{
415	>	cmdline_parser_free (args_info);
416	>	exit (EXIT_FAILURE);
417	>	}
418	>
419	>	return result;
420	>	}
421	>
422	>	int
423	>	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
424	>	{
425	>	int result;
426	>	struct cmdline_parser_params params;
427	>
428	>	params.override = override;
429	>	params.initialize = initialize;
430	>	params.check_required = check_required;
431	>	params.check_ambiguity = 0;
432	>	params.print_errors = 1;
433	>
434	>	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
435	>
436	>	if (result == EXIT_FAILURE)
437	>	{
438	>	cmdline_parser_free (args_info);
439	>	exit (EXIT_FAILURE);
440	>	}
441	>
442	>	return result;
443	>	}
444	>
445	>	int
446	>	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
447	>	{
448	>	int result = EXIT_SUCCESS;
449	>
450	>	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
451	>	result = EXIT_FAILURE;
452	>
453	>	if (result == EXIT_FAILURE)
454	>	{
455	>	cmdline_parser_free (args_info);
456	>	exit (EXIT_FAILURE);
457	>	}
458	>
459	>	return result;
460	>	}
461	>
462	>	int
463	>	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
464	>	{
465	>	int error = 0;
466	>	FIX_UNUSED (additional_error);
467	>
468	>	/* checks for required options */
469	>	if (! args_info->input_given)
470	>	{
471	>	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
472	>	error = 1;
473	>	}
474	>
475	>	if (args_info->dynamicProps_group_counter == 0)
476	>	{
477	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
478	>	error = 1;
479	>	}
480	>
481	>
482	>	/* checks for dependences among options */
483	>
484	>	return error;
485	>	}
486	>
487	>
488	>	static char *package_name = 0;
489	>
490	>	/**
491	>	* @brief updates an option
492	>	* @param field the generic pointer to the field to update
493	>	* @param orig_field the pointer to the orig field
494	>	* @param field_given the pointer to the number of occurrence of this option
495	>	* @param prev_given the pointer to the number of occurrence already seen
496	>	* @param value the argument for this option (if null no arg was specified)
497	>	* @param possible_values the possible values for this option (if specified)
498	>	* @param default_value the default value (in case the option only accepts fixed values)
499	>	* @param arg_type the type of this option
500	>	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
501	>	* @param override @see cmdline_parser_params.override
502	>	* @param no_free whether to free a possible previous value
503	>	* @param multiple_option whether this is a multiple option
504	>	* @param long_opt the corresponding long option
505	>	* @param short_opt the corresponding short option (or '-' if none)
506	>	* @param additional_error possible further error specification
507	>	*/
508	>	static
509	>	int update_arg(void *field, char **orig_field,
510	>	unsigned int *field_given, unsigned int *prev_given,
511	>	char *value, const char *possible_values[],
512	>	const char *default_value,
513	>	cmdline_parser_arg_type arg_type,
514	>	int check_ambiguity, int override,
515	>	int no_free, int multiple_option,
516	>	const char *long_opt, char short_opt,
517	>	const char *additional_error)
518	>	{
519	>	char *stop_char = 0;
520	>	const char *val = value;
521	>	int found;
522	>	char **string_field;
523	>	FIX_UNUSED (field);
524	>
525	>	stop_char = 0;
526	>	found = 0;
527	>
528	>	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
529	>	{
530	>	if (short_opt != '-')
531	>	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
532	>	package_name, long_opt, short_opt,
533	>	(additional_error ? additional_error : ""));
534	>	else
535	>	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
536	>	package_name, long_opt,
537	>	(additional_error ? additional_error : ""));
538	>	return 1; /* failure */
539	>	}
540	>
541	>	FIX_UNUSED (default_value);
542	>
543	>	if (field_given && *field_given && ! override)
544	>	return 0;
545	>	if (prev_given)
546	>	(*prev_given)++;
547	>	if (field_given)
548	>	(*field_given)++;
549	>	if (possible_values)
550	>	val = possible_values[found];
551	>
552	>	switch(arg_type) {
553	>	case ARG_INT:
554	>	if (val) *((int *)field) = strtol (val, &stop_char, 0);
555	>	break;
556	>	case ARG_STRING:
557	>	if (val) {
558	>	string_field = (char **)field;
559	>	if (!no_free && *string_field)
560	>	free (*string_field); /* free previous string */
561	>	*string_field = gengetopt_strdup (val);
562	>	}
563	>	break;
564	>	default:
565	>	break;
566	>	};
567
568	+	/* check numeric conversion */
569	+	switch(arg_type) {
570	+	case ARG_INT:
571	+	if (val && !(stop_char && *stop_char == '\0')) {
572	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
573	+	return 1; /* failure */
574	+	}
575	+	break;
576	+	default:
577	+	;
578	+	};
579	+
580	+	/* store the original value */
581	+	switch(arg_type) {
582	+	case ARG_NO:
583	+	break;
584	+	default:
585	+	if (value && orig_field) {
586	+	if (no_free) {
587	+	*orig_field = value;
588	+	} else {
589	+	if (*orig_field)
590	+	free (*orig_field); /* free previous string */
591	+	*orig_field = gengetopt_strdup (value);
592	+	}
593	+	}
594	+	};
595	+
596	+	return 0; /* OK */
597	+	}
598	+
599	+
600	+	int
601	+	cmdline_parser_internal (
602	+	int argc, char **argv, struct gengetopt_args_info *args_info,
603	+	struct cmdline_parser_params *params, const char *additional_error)
604	+	{
605	+	int c;        /* Character of the parsed option.  */
606	+
607	+	int error = 0;
608	+	struct gengetopt_args_info local_args_info;
609	+
610	+	int override;
611	+	int initialize;
612	+	int check_required;
613	+	int check_ambiguity;
614	+
615	+	package_name = argv[0];
616	+
617	+	override = params->override;
618	+	initialize = params->initialize;
619	+	check_required = params->check_required;
620	+	check_ambiguity = params->check_ambiguity;
621	+
622	+	if (initialize)
623	+	cmdline_parser_init (args_info);
624	+
625	+	cmdline_parser_init (&local_args_info);
626	+
627		optarg = 0;
628	<	optind = 1;
629	<	opterr = 1;
628	>	optind = 0;
629	>	opterr = params->print_errors;
630		optopt = '?';
631
632		while (1)
633		{
634		int option_index = 0;
106	–	char *stop_char;
635
636		static struct option long_options[] = {
637		{ "help",       0, NULL, 'h' },
#	Line 113 | Line 641 | cmdline_parser (int argc, char * const *argv, struct g
641		{ "sele1",      1, NULL, 0 },
642		{ "sele2",      1, NULL, 0 },
643		{ "order",      1, NULL, 0 },
644	<	{ "rmsd",       0, NULL, 'm' },
644	>	{ "nzbins",     1, NULL, 'z' },
645	>	{ "memory",     1, NULL, 'm' },
646	>	{ "selecorr",   0, NULL, 's' },
647		{ "rcorr",      0, NULL, 'r' },
648		{ "vcorr",      0, NULL, 'v' },
649		{ "dcorr",      0, NULL, 'd' },
650		{ "lcorr",      0, NULL, 'l' },
651	<	{ NULL, 0, NULL, 0 }
651	>	{ "lcorrZ",     0, NULL, 0 },
652	>	{ "sdcorr",     0, NULL, 'M' },
653	>	{ "r_rcorr",    0, NULL, 0 },
654	>	{ "thetacorr",  0, NULL, 0 },
655	>	{ "drcorr",     0, NULL, 0 },
656	>	{ "helfandEcorr",       0, NULL, 0 },
657	>	{ "momentum",   0, NULL, 'p' },
658	>	{ "stresscorr", 0, NULL, 0 },
659	>	{ 0,  0, 0, 0 }
660		};
661
662	<	stop_char = 0;
125	<	c = getopt_long (argc, argv, "hVi:o:mrvdl", long_options, &option_index);
662	>	c = getopt_long (argc, argv, "hVi:o:z:m:srvdlMp", long_options, &option_index);
663
664		if (c == -1) break;       /* Exit from `while (1)' loop.  */
665
666		switch (c)
667		{
668		case 'h':       /* Print help and exit.  */
132	–	clear_args ();
669		cmdline_parser_print_help ();
670	+	cmdline_parser_free (&local_args_info);
671		exit (EXIT_SUCCESS);
672
673		case 'V':       /* Print version and exit.  */
137	–	clear_args ();
674		cmdline_parser_print_version ();
675	+	cmdline_parser_free (&local_args_info);
676		exit (EXIT_SUCCESS);
677
678		case 'i':       /* input dump file.  */
679	<	if (args_info->input_given)
680	<	{
681	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
682	<	clear_args ();
683	<	exit (EXIT_FAILURE);
684	<	}
685	<	args_info->input_given = 1;
686	<	args_info->input_arg = gengetopt_strdup (optarg);
679	>
680	>
681	>	if (update_arg( (void *)&(args_info->input_arg),
682	>	&(args_info->input_orig), &(args_info->input_given),
683	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
684	>	check_ambiguity, override, 0, 0,
685	>	"input", 'i',
686	>	additional_error))
687	>	goto failure;
688	>
689		break;
151	–
690		case 'o':       /* output file name.  */
691	<	if (args_info->output_given)
692	<	{
693	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
694	<	clear_args ();
695	<	exit (EXIT_FAILURE);
696	<	}
697	<	args_info->output_given = 1;
698	<	args_info->output_arg = gengetopt_strdup (optarg);
691	>
692	>
693	>	if (update_arg( (void *)&(args_info->output_arg),
694	>	&(args_info->output_orig), &(args_info->output_given),
695	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
696	>	check_ambiguity, override, 0, 0,
697	>	"output", 'o',
698	>	additional_error))
699	>	goto failure;
700	>
701		break;
702	<
703	<	case 'm':       /* rmsd.  */
704	<	if (args_info->rmsd_given)
705	<	{
706	<	fprintf (stderr, "%s: `--rmsd' (`-m') option given more than once\n", CMDLINE_PARSER_PACKAGE);
707	<	clear_args ();
708	<	exit (EXIT_FAILURE);
709	<	}
710	<	args_info->rmsd_given = 1;
711	<	dynamicProps_group_counter += 1;
712	<	break;
713	<
714	<	case 'r':       /* position correlation function.  */
715	<	if (args_info->rcorr_given)
716	<	{
717	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
718	<	clear_args ();
719	<	exit (EXIT_FAILURE);
720	<	}
721	<	args_info->rcorr_given = 1;
722	<	dynamicProps_group_counter += 1;
723	<	break;
724	<
702	>	case 'z':       /* Number of Z bins.  */
703	>
704	>
705	>	if (update_arg( (void *)&(args_info->nzbins_arg),
706	>	&(args_info->nzbins_orig), &(args_info->nzbins_given),
707	>	&(local_args_info.nzbins_given), optarg, 0, "100", ARG_INT,
708	>	check_ambiguity, override, 0, 0,
709	>	"nzbins", 'z',
710	>	additional_error))
711	>	goto failure;
712	>
713	>	break;
714	>	case 'm':       /* Available memory (defaults to 2G).  */
715	>
716	>
717	>	if (update_arg( (void *)&(args_info->memory_arg),
718	>	&(args_info->memory_orig), &(args_info->memory_given),
719	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
720	>	check_ambiguity, override, 0, 0,
721	>	"memory", 'm',
722	>	additional_error))
723	>	goto failure;
724	>
725	>	break;
726	>	case 's':       /* selection correlation function.  */
727	>
728	>	if (args_info->dynamicProps_group_counter && override)
729	>	reset_group_dynamicProps (args_info);
730	>	args_info->dynamicProps_group_counter += 1;
731	>
732	>	if (update_arg( 0 ,
733	>	0 , &(args_info->selecorr_given),
734	>	&(local_args_info.selecorr_given), optarg, 0, 0, ARG_NO,
735	>	check_ambiguity, override, 0, 0,
736	>	"selecorr", 's',
737	>	additional_error))
738	>	goto failure;
739	>
740	>	break;
741	>	case 'r':       /* rmsd.  */
742	>
743	>	if (args_info->dynamicProps_group_counter && override)
744	>	reset_group_dynamicProps (args_info);
745	>	args_info->dynamicProps_group_counter += 1;
746	>
747	>	if (update_arg( 0 ,
748	>	0 , &(args_info->rcorr_given),
749	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
750	>	check_ambiguity, override, 0, 0,
751	>	"rcorr", 'r',
752	>	additional_error))
753	>	goto failure;
754	>
755	>	break;
756		case 'v':       /* velocity correlation function.  */
757	<	if (args_info->vcorr_given)
758	<	{
759	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
760	<	clear_args ();
761	<	exit (EXIT_FAILURE);
762	<	}
763	<	args_info->vcorr_given = 1;
764	<	dynamicProps_group_counter += 1;
765	<	break;
766	<
757	>
758	>	if (args_info->dynamicProps_group_counter && override)
759	>	reset_group_dynamicProps (args_info);
760	>	args_info->dynamicProps_group_counter += 1;
761	>
762	>	if (update_arg( 0 ,
763	>	0 , &(args_info->vcorr_given),
764	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
765	>	check_ambiguity, override, 0, 0,
766	>	"vcorr", 'v',
767	>	additional_error))
768	>	goto failure;
769	>
770	>	break;
771		case 'd':       /* dipole correlation function.  */
772	<	if (args_info->dcorr_given)
773	<	{
774	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
775	<	clear_args ();
776	<	exit (EXIT_FAILURE);
777	<	}
778	<	args_info->dcorr_given = 1;
779	<	dynamicProps_group_counter += 1;
780	<	break;
781	<
772	>
773	>	if (args_info->dynamicProps_group_counter && override)
774	>	reset_group_dynamicProps (args_info);
775	>	args_info->dynamicProps_group_counter += 1;
776	>
777	>	if (update_arg( 0 ,
778	>	0 , &(args_info->dcorr_given),
779	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
780	>	check_ambiguity, override, 0, 0,
781	>	"dcorr", 'd',
782	>	additional_error))
783	>	goto failure;
784	>
785	>	break;
786		case 'l':       /* Lengendre correlation function.  */
787	<	if (args_info->lcorr_given)
788	<	{
789	<	fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
790	<	clear_args ();
791	<	exit (EXIT_FAILURE);
792	<	}
793	<	args_info->lcorr_given = 1;
794	<	dynamicProps_group_counter += 1;
795	<	break;
796	<
787	>
788	>	if (args_info->dynamicProps_group_counter && override)
789	>	reset_group_dynamicProps (args_info);
790	>	args_info->dynamicProps_group_counter += 1;
791	>
792	>	if (update_arg( 0 ,
793	>	0 , &(args_info->lcorr_given),
794	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
795	>	check_ambiguity, override, 0, 0,
796	>	"lcorr", 'l',
797	>	additional_error))
798	>	goto failure;
799	>
800	>	break;
801	>	case 'M':       /* System dipole correlation function.  */
802	>
803	>	if (args_info->dynamicProps_group_counter && override)
804	>	reset_group_dynamicProps (args_info);
805	>	args_info->dynamicProps_group_counter += 1;
806	>
807	>	if (update_arg( 0 ,
808	>	0 , &(args_info->sdcorr_given),
809	>	&(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
810	>	check_ambiguity, override, 0, 0,
811	>	"sdcorr", 'M',
812	>	additional_error))
813	>	goto failure;
814	>
815	>	break;
816	>	case 'p':       /* Helfand momentum for viscosity.  */
817	>
818	>	if (args_info->dynamicProps_group_counter && override)
819	>	reset_group_dynamicProps (args_info);
820	>	args_info->dynamicProps_group_counter += 1;
821	>
822	>	if (update_arg( 0 ,
823	>	0 , &(args_info->momentum_given),
824	>	&(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
825	>	check_ambiguity, override, 0, 0,
826	>	"momentum", 'p',
827	>	additional_error))
828	>	goto failure;
829	>
830	>	break;
831
832		case 0: /* Long option with no short option */
833		/* select first stuntdouble set.  */
834		if (strcmp (long_options[option_index].name, "sele1") == 0)
835		{
223	–	if (args_info->sele1_given)
224	–	{
225	–	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
226	–	clear_args ();
227	–	exit (EXIT_FAILURE);
228	–	}
229	–	args_info->sele1_given = 1;
230	–	args_info->sele1_arg = gengetopt_strdup (optarg);
231	–	break;
232	–	}
836
837	+
838	+	if (update_arg( (void *)&(args_info->sele1_arg),
839	+	&(args_info->sele1_orig), &(args_info->sele1_given),
840	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
841	+	check_ambiguity, override, 0, 0,
842	+	"sele1", '-',
843	+	additional_error))
844	+	goto failure;
845	+
846	+	}
847		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
848		else if (strcmp (long_options[option_index].name, "sele2") == 0)
849		{
237	–	if (args_info->sele2_given)
238	–	{
239	–	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
240	–	clear_args ();
241	–	exit (EXIT_FAILURE);
242	–	}
243	–	args_info->sele2_given = 1;
244	–	args_info->sele2_arg = gengetopt_strdup (optarg);
245	–	break;
246	–	}
850
851	+
852	+	if (update_arg( (void *)&(args_info->sele2_arg),
853	+	&(args_info->sele2_orig), &(args_info->sele2_given),
854	+	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
855	+	check_ambiguity, override, 0, 0,
856	+	"sele2", '-',
857	+	additional_error))
858	+	goto failure;
859	+
860	+	}
861		/* Lengendre Polynomial Order.  */
862		else if (strcmp (long_options[option_index].name, "order") == 0)
863		{
864	<	if (args_info->order_given)
865	<	{
866	<	fprintf (stderr, "%s: `--order' option given more than once\n", CMDLINE_PARSER_PACKAGE);
867	<	clear_args ();
868	<	exit (EXIT_FAILURE);
869	<	}
870	<	args_info->order_given = 1;
871	<	args_info->order_arg = strtol (optarg,&stop_char,0);
872	<	break;
864	>
865	>
866	>	if (update_arg( (void *)&(args_info->order_arg),
867	>	&(args_info->order_orig), &(args_info->order_given),
868	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
869	>	check_ambiguity, override, 0, 0,
870	>	"order", '-',
871	>	additional_error))
872	>	goto failure;
873	>
874		}
875	+	/* Lengendre correlation function binned by Z.  */
876	+	else if (strcmp (long_options[option_index].name, "lcorrZ") == 0)
877	+	{
878
879	<
879	>	if (args_info->dynamicProps_group_counter && override)
880	>	reset_group_dynamicProps (args_info);
881	>	args_info->dynamicProps_group_counter += 1;
882	>
883	>	if (update_arg( 0 ,
884	>	0 , &(args_info->lcorrZ_given),
885	>	&(local_args_info.lcorrZ_given), optarg, 0, 0, ARG_NO,
886	>	check_ambiguity, override, 0, 0,
887	>	"lcorrZ", '-',
888	>	additional_error))
889	>	goto failure;
890	>
891	>	}
892	>	/* Radial rmsd.  */
893	>	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
894	>	{
895	>
896	>	if (args_info->dynamicProps_group_counter && override)
897	>	reset_group_dynamicProps (args_info);
898	>	args_info->dynamicProps_group_counter += 1;
899	>
900	>	if (update_arg( 0 ,
901	>	0 , &(args_info->r_rcorr_given),
902	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
903	>	check_ambiguity, override, 0, 0,
904	>	"r_rcorr", '-',
905	>	additional_error))
906	>	goto failure;
907	>
908	>	}
909	>	/* Angular rmsd.  */
910	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
911	>	{
912	>
913	>	if (args_info->dynamicProps_group_counter && override)
914	>	reset_group_dynamicProps (args_info);
915	>	args_info->dynamicProps_group_counter += 1;
916	>
917	>	if (update_arg( 0 ,
918	>	0 , &(args_info->thetacorr_given),
919	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
920	>	check_ambiguity, override, 0, 0,
921	>	"thetacorr", '-',
922	>	additional_error))
923	>	goto failure;
924	>
925	>	}
926	>	/* Directional rmsd for particles with unit vectors.  */
927	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
928	>	{
929	>
930	>	if (args_info->dynamicProps_group_counter && override)
931	>	reset_group_dynamicProps (args_info);
932	>	args_info->dynamicProps_group_counter += 1;
933	>
934	>	if (update_arg( 0 ,
935	>	0 , &(args_info->drcorr_given),
936	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
937	>	check_ambiguity, override, 0, 0,
938	>	"drcorr", '-',
939	>	additional_error))
940	>	goto failure;
941	>
942	>	}
943	>	/* Helfand moment for thermal conductvity.  */
944	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
945	>	{
946	>
947	>	if (args_info->dynamicProps_group_counter && override)
948	>	reset_group_dynamicProps (args_info);
949	>	args_info->dynamicProps_group_counter += 1;
950	>
951	>	if (update_arg( 0 ,
952	>	0 , &(args_info->helfandEcorr_given),
953	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
954	>	check_ambiguity, override, 0, 0,
955	>	"helfandEcorr", '-',
956	>	additional_error))
957	>	goto failure;
958	>
959	>	}
960	>	/* Stress tensor correlation function.  */
961	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
962	>	{
963	>
964	>	if (args_info->dynamicProps_group_counter && override)
965	>	reset_group_dynamicProps (args_info);
966	>	args_info->dynamicProps_group_counter += 1;
967	>
968	>	if (update_arg( 0 ,
969	>	0 , &(args_info->stresscorr_given),
970	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
971	>	check_ambiguity, override, 0, 0,
972	>	"stresscorr", '-',
973	>	additional_error))
974	>	goto failure;
975	>
976	>	}
977	>
978	>	break;
979		case '?':       /* Invalid option.  */
980		/* `getopt_long' already printed an error message.  */
981	<	exit (EXIT_FAILURE);
981	>	goto failure;
982
983		default:        /* bug: option not considered.  */
984	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
984	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
985		abort ();
986		} /* switch */
987		} /* while */
988
989	<	if ( dynamicProps_group_counter != 1)
989	>	if (args_info->dynamicProps_group_counter > 1)
990		{
991	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
992	<	missing_required_options = 1;
991	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
992	>	error = 1;
993		}
994
995
996	<	if (! args_info->input_given)
996	>
997	>	if (check_required)
998		{
999	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
283	<	missing_required_options = 1;
999	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
1000		}
285	–	if ( missing_required_options )
286	–	exit (EXIT_FAILURE);
1001
1002	+	cmdline_parser_release (&local_args_info);
1003	+
1004	+	if ( error )
1005	+	return (EXIT_FAILURE);
1006	+
1007	+	if (optind < argc)
1008	+	{
1009	+	int i = 0 ;
1010	+	int found_prog_name = 0;
1011	+	/* whether program name, i.e., argv[0], is in the remaining args
1012	+	(this may happen with some implementations of getopt,
1013	+	but surely not with the one included by gengetopt) */
1014	+
1015	+	i = optind;
1016	+	while (i < argc)
1017	+	if (argv[i++] == argv[0]) {
1018	+	found_prog_name = 1;
1019	+	break;
1020	+	}
1021	+	i = 0;
1022	+
1023	+	args_info->inputs_num = argc - optind - found_prog_name;
1024	+	args_info->inputs =
1025	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
1026	+	while (optind < argc)
1027	+	if (argv[optind++] != argv[0])
1028	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
1029	+	}
1030	+
1031		return 0;
1032	+
1033	+	failure:
1034	+
1035	+	cmdline_parser_release (&local_args_info);
1036	+	return (EXIT_FAILURE);
1037		}

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords), Revision 916 by tim, Fri Mar 24 16:49:09 2006 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (property svn:keywords), Revision 1915 by gezelter, Mon Jul 29 17:55:17 2013 UTC

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