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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents), Revision 876 by tim, Mon Jan 30 22:25:27 2006 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (file contents), Revision 1934 by gezelter, Mon Aug 26 14:15:09 2013 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F DynamicPropsCmd
4	>	gengetopt --file-name=DynamicPropsCmd --unamed-opts
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#include <getopt.h>
25
26		#include "DynamicPropsCmd.h"
27
28	+	const char *gengetopt_args_info_purpose = "";
29	+
30	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31	+
32	+	const char *gengetopt_args_info_description = "";
33	+
34	+	const char *gengetopt_args_info_help[] = {
35	+	"  -h, --help                    Print help and exit",
36	+	"  -V, --version                 Print version and exit",
37	+	"  -i, --input=filename          input dump file",
38	+	"  -o, --output=filename         output file name",
39	+	"      --sele1=selection script  select first stuntdouble set",
40	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41	+	"      --order=INT               Lengendre Polynomial Order",
42	+	"  -z, --nzbins=INT              Number of Z bins  (default=`100')",
43	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
44	+	"\n Group: dynamicProps\n   an option of this group is required",
45	+	"  -s, --selecorr                selection correlation function",
46	+	"  -r, --rcorr                   rmsd",
47	+	"  -v, --vcorr                   velocity correlation function",
48	+	"  -d, --dcorr                   dipole correlation function",
49	+	"  -l, --lcorr                   Lengendre correlation function",
50	+	"      --lcorrZ                  Lengendre correlation function binned by Z",
51	+	"      --cohZ                    Lengendre correlation function for OH bond \n                                  vectors binned by Z",
52	+	"  -M, --sdcorr                  System dipole correlation function",
53	+	"      --r_rcorr                 Radial rmsd",
54	+	"      --thetacorr               Angular rmsd",
55	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
56	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
57	+	"  -p, --momentum                Helfand momentum for viscosity",
58	+	"      --stresscorr              Stress tensor correlation function",
59	+	0
60	+	};
61	+
62	+	typedef enum {ARG_NO
63	+	, ARG_STRING
64	+	, ARG_INT
65	+	} cmdline_parser_arg_type;
66	+
67	+	static
68	+	void clear_given (struct gengetopt_args_info *args_info);
69	+	static
70	+	void clear_args (struct gengetopt_args_info *args_info);
71	+
72	+	static int
73	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
74	+	struct cmdline_parser_params *params, const char *additional_error);
75	+
76	+	static int
77	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
78	+
79	+	static char *
80	+	gengetopt_strdup (const char *s);
81	+
82	+	static
83	+	void clear_given (struct gengetopt_args_info *args_info)
84	+	{
85	+	args_info->help_given = 0 ;
86	+	args_info->version_given = 0 ;
87	+	args_info->input_given = 0 ;
88	+	args_info->output_given = 0 ;
89	+	args_info->sele1_given = 0 ;
90	+	args_info->sele2_given = 0 ;
91	+	args_info->order_given = 0 ;
92	+	args_info->nzbins_given = 0 ;
93	+	args_info->memory_given = 0 ;
94	+	args_info->selecorr_given = 0 ;
95	+	args_info->rcorr_given = 0 ;
96	+	args_info->vcorr_given = 0 ;
97	+	args_info->dcorr_given = 0 ;
98	+	args_info->lcorr_given = 0 ;
99	+	args_info->lcorrZ_given = 0 ;
100	+	args_info->cohZ_given = 0 ;
101	+	args_info->sdcorr_given = 0 ;
102	+	args_info->r_rcorr_given = 0 ;
103	+	args_info->thetacorr_given = 0 ;
104	+	args_info->drcorr_given = 0 ;
105	+	args_info->helfandEcorr_given = 0 ;
106	+	args_info->momentum_given = 0 ;
107	+	args_info->stresscorr_given = 0 ;
108	+	args_info->dynamicProps_group_counter = 0 ;
109	+	}
110	+
111	+	static
112	+	void clear_args (struct gengetopt_args_info *args_info)
113	+	{
114	+	FIX_UNUSED (args_info);
115	+	args_info->input_arg = NULL;
116	+	args_info->input_orig = NULL;
117	+	args_info->output_arg = NULL;
118	+	args_info->output_orig = NULL;
119	+	args_info->sele1_arg = NULL;
120	+	args_info->sele1_orig = NULL;
121	+	args_info->sele2_arg = NULL;
122	+	args_info->sele2_orig = NULL;
123	+	args_info->order_orig = NULL;
124	+	args_info->nzbins_arg = 100;
125	+	args_info->nzbins_orig = NULL;
126	+	args_info->memory_arg = gengetopt_strdup ("2G");
127	+	args_info->memory_orig = NULL;
128	+
129	+	}
130	+
131	+	static
132	+	void init_args_info(struct gengetopt_args_info *args_info)
133	+	{
134	+
135	+
136	+	args_info->help_help = gengetopt_args_info_help[0] ;
137	+	args_info->version_help = gengetopt_args_info_help[1] ;
138	+	args_info->input_help = gengetopt_args_info_help[2] ;
139	+	args_info->output_help = gengetopt_args_info_help[3] ;
140	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
141	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
142	+	args_info->order_help = gengetopt_args_info_help[6] ;
143	+	args_info->nzbins_help = gengetopt_args_info_help[7] ;
144	+	args_info->memory_help = gengetopt_args_info_help[8] ;
145	+	args_info->selecorr_help = gengetopt_args_info_help[10] ;
146	+	args_info->rcorr_help = gengetopt_args_info_help[11] ;
147	+	args_info->vcorr_help = gengetopt_args_info_help[12] ;
148	+	args_info->dcorr_help = gengetopt_args_info_help[13] ;
149	+	args_info->lcorr_help = gengetopt_args_info_help[14] ;
150	+	args_info->lcorrZ_help = gengetopt_args_info_help[15] ;
151	+	args_info->cohZ_help = gengetopt_args_info_help[16] ;
152	+	args_info->sdcorr_help = gengetopt_args_info_help[17] ;
153	+	args_info->r_rcorr_help = gengetopt_args_info_help[18] ;
154	+	args_info->thetacorr_help = gengetopt_args_info_help[19] ;
155	+	args_info->drcorr_help = gengetopt_args_info_help[20] ;
156	+	args_info->helfandEcorr_help = gengetopt_args_info_help[21] ;
157	+	args_info->momentum_help = gengetopt_args_info_help[22] ;
158	+	args_info->stresscorr_help = gengetopt_args_info_help[23] ;
159	+
160	+	}
161	+
162		void
163		cmdline_parser_print_version (void)
164		{
165	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
165	>	printf ("%s %s\n",
166	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
167	>	CMDLINE_PARSER_VERSION);
168		}
169
170	+	static void print_help_common(void) {
171	+	cmdline_parser_print_version ();
172	+
173	+	if (strlen(gengetopt_args_info_purpose) > 0)
174	+	printf("\n%s\n", gengetopt_args_info_purpose);
175	+
176	+	if (strlen(gengetopt_args_info_usage) > 0)
177	+	printf("\n%s\n", gengetopt_args_info_usage);
178	+
179	+	printf("\n");
180	+
181	+	if (strlen(gengetopt_args_info_description) > 0)
182	+	printf("%s\n\n", gengetopt_args_info_description);
183	+	}
184	+
185		void
186		cmdline_parser_print_help (void)
187		{
188	<	cmdline_parser_print_version ();
189	<	printf("\n"
190	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
191	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("      --order=INT               Lengendre Polynomial Order\n");
45	<	printf("\n");
46	<	printf(" Group: dynamicProps  an option of this group is required\n");
47	<	printf("  -r, --rcorr                   rmsd\n");
48	<	printf("  -v, --vcorr                   velocity correlation function\n");
49	<	printf("  -d, --dcorr                   dipole correlation function\n");
50	<	printf("  -l, --lcorr                   Lengendre correlation function\n");
188	>	int i = 0;
189	>	print_help_common();
190	>	while (gengetopt_args_info_help[i])
191	>	printf("%s\n", gengetopt_args_info_help[i++]);
192		}
193
194	+	void
195	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
196	+	{
197	+	clear_given (args_info);
198	+	clear_args (args_info);
199	+	init_args_info (args_info);
200
201	<	static char *gengetopt_strdup (const char *s);
201	>	args_info->inputs = 0;
202	>	args_info->inputs_num = 0;
203	>	}
204
205	<	/* gengetopt_strdup() */
206	<	/* strdup.c replacement of strdup, which is not standard */
205	>	void
206	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
207	>	{
208	>	if (params)
209	>	{
210	>	params->override = 0;
211	>	params->initialize = 1;
212	>	params->check_required = 1;
213	>	params->check_ambiguity = 0;
214	>	params->print_errors = 1;
215	>	}
216	>	}
217	>
218	>	struct cmdline_parser_params *
219	>	cmdline_parser_params_create(void)
220	>	{
221	>	struct cmdline_parser_params *params =
222	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
223	>	cmdline_parser_params_init(params);
224	>	return params;
225	>	}
226	>
227	>	static void
228	>	free_string_field (char **s)
229	>	{
230	>	if (*s)
231	>	{
232	>	free (*s);
233	>	*s = 0;
234	>	}
235	>	}
236	>
237	>
238	>	static void
239	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
240	>	{
241	>	unsigned int i;
242	>	free_string_field (&(args_info->input_arg));
243	>	free_string_field (&(args_info->input_orig));
244	>	free_string_field (&(args_info->output_arg));
245	>	free_string_field (&(args_info->output_orig));
246	>	free_string_field (&(args_info->sele1_arg));
247	>	free_string_field (&(args_info->sele1_orig));
248	>	free_string_field (&(args_info->sele2_arg));
249	>	free_string_field (&(args_info->sele2_orig));
250	>	free_string_field (&(args_info->order_orig));
251	>	free_string_field (&(args_info->nzbins_orig));
252	>	free_string_field (&(args_info->memory_arg));
253	>	free_string_field (&(args_info->memory_orig));
254	>
255	>
256	>	for (i = 0; i < args_info->inputs_num; ++i)
257	>	free (args_info->inputs [i]);
258	>
259	>	if (args_info->inputs_num)
260	>	free (args_info->inputs);
261	>
262	>	clear_given (args_info);
263	>	}
264	>
265	>
266	>	static void
267	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
268	>	{
269	>	FIX_UNUSED (values);
270	>	if (arg) {
271	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
272	>	} else {
273	>	fprintf(outfile, "%s\n", opt);
274	>	}
275	>	}
276	>
277	>
278	>	int
279	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
280	>	{
281	>	int i = 0;
282	>
283	>	if (!outfile)
284	>	{
285	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
286	>	return EXIT_FAILURE;
287	>	}
288	>
289	>	if (args_info->help_given)
290	>	write_into_file(outfile, "help", 0, 0 );
291	>	if (args_info->version_given)
292	>	write_into_file(outfile, "version", 0, 0 );
293	>	if (args_info->input_given)
294	>	write_into_file(outfile, "input", args_info->input_orig, 0);
295	>	if (args_info->output_given)
296	>	write_into_file(outfile, "output", args_info->output_orig, 0);
297	>	if (args_info->sele1_given)
298	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
299	>	if (args_info->sele2_given)
300	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
301	>	if (args_info->order_given)
302	>	write_into_file(outfile, "order", args_info->order_orig, 0);
303	>	if (args_info->nzbins_given)
304	>	write_into_file(outfile, "nzbins", args_info->nzbins_orig, 0);
305	>	if (args_info->memory_given)
306	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
307	>	if (args_info->selecorr_given)
308	>	write_into_file(outfile, "selecorr", 0, 0 );
309	>	if (args_info->rcorr_given)
310	>	write_into_file(outfile, "rcorr", 0, 0 );
311	>	if (args_info->vcorr_given)
312	>	write_into_file(outfile, "vcorr", 0, 0 );
313	>	if (args_info->dcorr_given)
314	>	write_into_file(outfile, "dcorr", 0, 0 );
315	>	if (args_info->lcorr_given)
316	>	write_into_file(outfile, "lcorr", 0, 0 );
317	>	if (args_info->lcorrZ_given)
318	>	write_into_file(outfile, "lcorrZ", 0, 0 );
319	>	if (args_info->cohZ_given)
320	>	write_into_file(outfile, "cohZ", 0, 0 );
321	>	if (args_info->sdcorr_given)
322	>	write_into_file(outfile, "sdcorr", 0, 0 );
323	>	if (args_info->r_rcorr_given)
324	>	write_into_file(outfile, "r_rcorr", 0, 0 );
325	>	if (args_info->thetacorr_given)
326	>	write_into_file(outfile, "thetacorr", 0, 0 );
327	>	if (args_info->drcorr_given)
328	>	write_into_file(outfile, "drcorr", 0, 0 );
329	>	if (args_info->helfandEcorr_given)
330	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
331	>	if (args_info->momentum_given)
332	>	write_into_file(outfile, "momentum", 0, 0 );
333	>	if (args_info->stresscorr_given)
334	>	write_into_file(outfile, "stresscorr", 0, 0 );
335	>
336	>
337	>	i = EXIT_SUCCESS;
338	>	return i;
339	>	}
340	>
341	>	int
342	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
343	>	{
344	>	FILE *outfile;
345	>	int i = 0;
346	>
347	>	outfile = fopen(filename, "w");
348	>
349	>	if (!outfile)
350	>	{
351	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
352	>	return EXIT_FAILURE;
353	>	}
354	>
355	>	i = cmdline_parser_dump(outfile, args_info);
356	>	fclose (outfile);
357	>
358	>	return i;
359	>	}
360	>
361	>	void
362	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
363	>	{
364	>	cmdline_parser_release (args_info);
365	>	}
366	>
367	>	/** @brief replacement of strdup, which is not standard */
368		char *
369		gengetopt_strdup (const char *s)
370		{
371	<	char *result = (char*)malloc(strlen(s) + 1);
371	>	char *result = 0;
372	>	if (!s)
373	>	return result;
374	>
375	>	result = (char*)malloc(strlen(s) + 1);
376		if (result == (char*)0)
377		return (char*)0;
378		strcpy(result, s);
379		return result;
380		}
381
382	<	int
383	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
382	>	static void
383	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
384		{
385	<	int c;        /* Character of the parsed option.  */
386	<	int missing_required_options = 0;
73	<	int dynamicProps_group_counter = 0;
385	>	if (! args_info->dynamicProps_group_counter)
386	>	return;
387
388	<
76	<	args_info->help_given = 0 ;
77	<	args_info->version_given = 0 ;
78	<	args_info->input_given = 0 ;
79	<	args_info->output_given = 0 ;
80	<	args_info->sele1_given = 0 ;
81	<	args_info->sele2_given = 0 ;
82	<	args_info->order_given = 0 ;
388	>	args_info->selecorr_given = 0 ;
389		args_info->rcorr_given = 0 ;
390		args_info->vcorr_given = 0 ;
391		args_info->dcorr_given = 0 ;
392		args_info->lcorr_given = 0 ;
393	<	#define clear_args() { \
394	<	args_info->input_arg = NULL; \
395	<	args_info->output_arg = NULL; \
396	<	args_info->sele1_arg = NULL; \
397	<	args_info->sele2_arg = NULL; \
393	>	args_info->lcorrZ_given = 0 ;
394	>	args_info->cohZ_given = 0 ;
395	>	args_info->sdcorr_given = 0 ;
396	>	args_info->r_rcorr_given = 0 ;
397	>	args_info->thetacorr_given = 0 ;
398	>	args_info->drcorr_given = 0 ;
399	>	args_info->helfandEcorr_given = 0 ;
400	>	args_info->momentum_given = 0 ;
401	>	args_info->stresscorr_given = 0 ;
402	>
403	>	args_info->dynamicProps_group_counter = 0;
404		}
405
406	<	clear_args();
406	>	int
407	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
408	>	{
409	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
410	>	}
411	>
412	>	int
413	>	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
414	>	struct cmdline_parser_params *params)
415	>	{
416	>	int result;
417	>	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
418	>
419	>	if (result == EXIT_FAILURE)
420	>	{
421	>	cmdline_parser_free (args_info);
422	>	exit (EXIT_FAILURE);
423	>	}
424	>
425	>	return result;
426	>	}
427	>
428	>	int
429	>	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
430	>	{
431	>	int result;
432	>	struct cmdline_parser_params params;
433	>
434	>	params.override = override;
435	>	params.initialize = initialize;
436	>	params.check_required = check_required;
437	>	params.check_ambiguity = 0;
438	>	params.print_errors = 1;
439	>
440	>	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
441	>
442	>	if (result == EXIT_FAILURE)
443	>	{
444	>	cmdline_parser_free (args_info);
445	>	exit (EXIT_FAILURE);
446	>	}
447	>
448	>	return result;
449	>	}
450	>
451	>	int
452	>	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
453	>	{
454	>	int result = EXIT_SUCCESS;
455	>
456	>	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
457	>	result = EXIT_FAILURE;
458	>
459	>	if (result == EXIT_FAILURE)
460	>	{
461	>	cmdline_parser_free (args_info);
462	>	exit (EXIT_FAILURE);
463	>	}
464	>
465	>	return result;
466	>	}
467	>
468	>	int
469	>	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
470	>	{
471	>	int error = 0;
472	>	FIX_UNUSED (additional_error);
473	>
474	>	/* checks for required options */
475	>	if (! args_info->input_given)
476	>	{
477	>	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
478	>	error = 1;
479	>	}
480	>
481	>	if (args_info->dynamicProps_group_counter == 0)
482	>	{
483	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
484	>	error = 1;
485	>	}
486	>
487	>
488	>	/* checks for dependences among options */
489	>
490	>	return error;
491	>	}
492	>
493	>
494	>	static char *package_name = 0;
495	>
496	>	/**
497	>	* @brief updates an option
498	>	* @param field the generic pointer to the field to update
499	>	* @param orig_field the pointer to the orig field
500	>	* @param field_given the pointer to the number of occurrence of this option
501	>	* @param prev_given the pointer to the number of occurrence already seen
502	>	* @param value the argument for this option (if null no arg was specified)
503	>	* @param possible_values the possible values for this option (if specified)
504	>	* @param default_value the default value (in case the option only accepts fixed values)
505	>	* @param arg_type the type of this option
506	>	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
507	>	* @param override @see cmdline_parser_params.override
508	>	* @param no_free whether to free a possible previous value
509	>	* @param multiple_option whether this is a multiple option
510	>	* @param long_opt the corresponding long option
511	>	* @param short_opt the corresponding short option (or '-' if none)
512	>	* @param additional_error possible further error specification
513	>	*/
514	>	static
515	>	int update_arg(void *field, char **orig_field,
516	>	unsigned int *field_given, unsigned int *prev_given,
517	>	char *value, const char *possible_values[],
518	>	const char *default_value,
519	>	cmdline_parser_arg_type arg_type,
520	>	int check_ambiguity, int override,
521	>	int no_free, int multiple_option,
522	>	const char *long_opt, char short_opt,
523	>	const char *additional_error)
524	>	{
525	>	char *stop_char = 0;
526	>	const char *val = value;
527	>	int found;
528	>	char **string_field;
529	>	FIX_UNUSED (field);
530	>
531	>	stop_char = 0;
532	>	found = 0;
533	>
534	>	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
535	>	{
536	>	if (short_opt != '-')
537	>	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
538	>	package_name, long_opt, short_opt,
539	>	(additional_error ? additional_error : ""));
540	>	else
541	>	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
542	>	package_name, long_opt,
543	>	(additional_error ? additional_error : ""));
544	>	return 1; /* failure */
545	>	}
546	>
547	>	FIX_UNUSED (default_value);
548	>
549	>	if (field_given && *field_given && ! override)
550	>	return 0;
551	>	if (prev_given)
552	>	(*prev_given)++;
553	>	if (field_given)
554	>	(*field_given)++;
555	>	if (possible_values)
556	>	val = possible_values[found];
557	>
558	>	switch(arg_type) {
559	>	case ARG_INT:
560	>	if (val) *((int *)field) = strtol (val, &stop_char, 0);
561	>	break;
562	>	case ARG_STRING:
563	>	if (val) {
564	>	string_field = (char **)field;
565	>	if (!no_free && *string_field)
566	>	free (*string_field); /* free previous string */
567	>	*string_field = gengetopt_strdup (val);
568	>	}
569	>	break;
570	>	default:
571	>	break;
572	>	};
573
574	+	/* check numeric conversion */
575	+	switch(arg_type) {
576	+	case ARG_INT:
577	+	if (val && !(stop_char && *stop_char == '\0')) {
578	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
579	+	return 1; /* failure */
580	+	}
581	+	break;
582	+	default:
583	+	;
584	+	};
585	+
586	+	/* store the original value */
587	+	switch(arg_type) {
588	+	case ARG_NO:
589	+	break;
590	+	default:
591	+	if (value && orig_field) {
592	+	if (no_free) {
593	+	*orig_field = value;
594	+	} else {
595	+	if (*orig_field)
596	+	free (*orig_field); /* free previous string */
597	+	*orig_field = gengetopt_strdup (value);
598	+	}
599	+	}
600	+	};
601	+
602	+	return 0; /* OK */
603	+	}
604	+
605	+
606	+	int
607	+	cmdline_parser_internal (
608	+	int argc, char **argv, struct gengetopt_args_info *args_info,
609	+	struct cmdline_parser_params *params, const char *additional_error)
610	+	{
611	+	int c;        /* Character of the parsed option.  */
612	+
613	+	int error = 0;
614	+	struct gengetopt_args_info local_args_info;
615	+
616	+	int override;
617	+	int initialize;
618	+	int check_required;
619	+	int check_ambiguity;
620	+
621	+	package_name = argv[0];
622	+
623	+	override = params->override;
624	+	initialize = params->initialize;
625	+	check_required = params->check_required;
626	+	check_ambiguity = params->check_ambiguity;
627	+
628	+	if (initialize)
629	+	cmdline_parser_init (args_info);
630	+
631	+	cmdline_parser_init (&local_args_info);
632	+
633		optarg = 0;
634	<	optind = 1;
635	<	opterr = 1;
634	>	optind = 0;
635	>	opterr = params->print_errors;
636		optopt = '?';
637
638		while (1)
639		{
640		int option_index = 0;
104	–	char *stop_char;
641
642		static struct option long_options[] = {
643		{ "help",       0, NULL, 'h' },
#	Line 111 | Line 647 | cmdline_parser (int argc, char * const *argv, struct g
647		{ "sele1",      1, NULL, 0 },
648		{ "sele2",      1, NULL, 0 },
649		{ "order",      1, NULL, 0 },
650	+	{ "nzbins",     1, NULL, 'z' },
651	+	{ "memory",     1, NULL, 'm' },
652	+	{ "selecorr",   0, NULL, 's' },
653		{ "rcorr",      0, NULL, 'r' },
654		{ "vcorr",      0, NULL, 'v' },
655		{ "dcorr",      0, NULL, 'd' },
656		{ "lcorr",      0, NULL, 'l' },
657	<	{ NULL, 0, NULL, 0 }
657	>	{ "lcorrZ",     0, NULL, 0 },
658	>	{ "cohZ",       0, NULL, 0 },
659	>	{ "sdcorr",     0, NULL, 'M' },
660	>	{ "r_rcorr",    0, NULL, 0 },
661	>	{ "thetacorr",  0, NULL, 0 },
662	>	{ "drcorr",     0, NULL, 0 },
663	>	{ "helfandEcorr",       0, NULL, 0 },
664	>	{ "momentum",   0, NULL, 'p' },
665	>	{ "stresscorr", 0, NULL, 0 },
666	>	{ 0,  0, 0, 0 }
667		};
668
669	<	stop_char = 0;
122	<	c = getopt_long (argc, argv, "hVi:o:rvdl", long_options, &option_index);
669	>	c = getopt_long (argc, argv, "hVi:o:z:m:srvdlMp", long_options, &option_index);
670
671		if (c == -1) break;       /* Exit from `while (1)' loop.  */
672
673		switch (c)
674		{
675		case 'h':       /* Print help and exit.  */
129	–	clear_args ();
676		cmdline_parser_print_help ();
677	+	cmdline_parser_free (&local_args_info);
678		exit (EXIT_SUCCESS);
679
680		case 'V':       /* Print version and exit.  */
134	–	clear_args ();
681		cmdline_parser_print_version ();
682	+	cmdline_parser_free (&local_args_info);
683		exit (EXIT_SUCCESS);
684
685		case 'i':       /* input dump file.  */
686	<	if (args_info->input_given)
687	<	{
688	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
689	<	clear_args ();
690	<	exit (EXIT_FAILURE);
691	<	}
692	<	args_info->input_given = 1;
693	<	args_info->input_arg = gengetopt_strdup (optarg);
686	>
687	>
688	>	if (update_arg( (void *)&(args_info->input_arg),
689	>	&(args_info->input_orig), &(args_info->input_given),
690	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
691	>	check_ambiguity, override, 0, 0,
692	>	"input", 'i',
693	>	additional_error))
694	>	goto failure;
695	>
696		break;
148	–
697		case 'o':       /* output file name.  */
698	<	if (args_info->output_given)
699	<	{
700	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
701	<	clear_args ();
702	<	exit (EXIT_FAILURE);
703	<	}
704	<	args_info->output_given = 1;
705	<	args_info->output_arg = gengetopt_strdup (optarg);
698	>
699	>
700	>	if (update_arg( (void *)&(args_info->output_arg),
701	>	&(args_info->output_orig), &(args_info->output_given),
702	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
703	>	check_ambiguity, override, 0, 0,
704	>	"output", 'o',
705	>	additional_error))
706	>	goto failure;
707	>
708		break;
709	<
709	>	case 'z':       /* Number of Z bins.  */
710	>
711	>
712	>	if (update_arg( (void *)&(args_info->nzbins_arg),
713	>	&(args_info->nzbins_orig), &(args_info->nzbins_given),
714	>	&(local_args_info.nzbins_given), optarg, 0, "100", ARG_INT,
715	>	check_ambiguity, override, 0, 0,
716	>	"nzbins", 'z',
717	>	additional_error))
718	>	goto failure;
719	>
720	>	break;
721	>	case 'm':       /* Available memory (defaults to 2G).  */
722	>
723	>
724	>	if (update_arg( (void *)&(args_info->memory_arg),
725	>	&(args_info->memory_orig), &(args_info->memory_given),
726	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
727	>	check_ambiguity, override, 0, 0,
728	>	"memory", 'm',
729	>	additional_error))
730	>	goto failure;
731	>
732	>	break;
733	>	case 's':       /* selection correlation function.  */
734	>
735	>	if (args_info->dynamicProps_group_counter && override)
736	>	reset_group_dynamicProps (args_info);
737	>	args_info->dynamicProps_group_counter += 1;
738	>
739	>	if (update_arg( 0 ,
740	>	0 , &(args_info->selecorr_given),
741	>	&(local_args_info.selecorr_given), optarg, 0, 0, ARG_NO,
742	>	check_ambiguity, override, 0, 0,
743	>	"selecorr", 's',
744	>	additional_error))
745	>	goto failure;
746	>
747	>	break;
748		case 'r':       /* rmsd.  */
749	<	if (args_info->rcorr_given)
750	<	{
751	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
752	<	clear_args ();
753	<	exit (EXIT_FAILURE);
754	<	}
755	<	args_info->rcorr_given = 1;
756	<	dynamicProps_group_counter += 1;
757	<	break;
758	<
749	>
750	>	if (args_info->dynamicProps_group_counter && override)
751	>	reset_group_dynamicProps (args_info);
752	>	args_info->dynamicProps_group_counter += 1;
753	>
754	>	if (update_arg( 0 ,
755	>	0 , &(args_info->rcorr_given),
756	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
757	>	check_ambiguity, override, 0, 0,
758	>	"rcorr", 'r',
759	>	additional_error))
760	>	goto failure;
761	>
762	>	break;
763		case 'v':       /* velocity correlation function.  */
764	<	if (args_info->vcorr_given)
765	<	{
766	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
767	<	clear_args ();
768	<	exit (EXIT_FAILURE);
769	<	}
770	<	args_info->vcorr_given = 1;
771	<	dynamicProps_group_counter += 1;
772	<	break;
773	<
764	>
765	>	if (args_info->dynamicProps_group_counter && override)
766	>	reset_group_dynamicProps (args_info);
767	>	args_info->dynamicProps_group_counter += 1;
768	>
769	>	if (update_arg( 0 ,
770	>	0 , &(args_info->vcorr_given),
771	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
772	>	check_ambiguity, override, 0, 0,
773	>	"vcorr", 'v',
774	>	additional_error))
775	>	goto failure;
776	>
777	>	break;
778		case 'd':       /* dipole correlation function.  */
779	<	if (args_info->dcorr_given)
780	<	{
781	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
782	<	clear_args ();
783	<	exit (EXIT_FAILURE);
784	<	}
785	<	args_info->dcorr_given = 1;
786	<	dynamicProps_group_counter += 1;
787	<	break;
788	<
779	>
780	>	if (args_info->dynamicProps_group_counter && override)
781	>	reset_group_dynamicProps (args_info);
782	>	args_info->dynamicProps_group_counter += 1;
783	>
784	>	if (update_arg( 0 ,
785	>	0 , &(args_info->dcorr_given),
786	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
787	>	check_ambiguity, override, 0, 0,
788	>	"dcorr", 'd',
789	>	additional_error))
790	>	goto failure;
791	>
792	>	break;
793		case 'l':       /* Lengendre correlation function.  */
794	<	if (args_info->lcorr_given)
795	<	{
796	<	fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
797	<	clear_args ();
798	<	exit (EXIT_FAILURE);
799	<	}
800	<	args_info->lcorr_given = 1;
801	<	dynamicProps_group_counter += 1;
802	<	break;
803	<
794	>
795	>	if (args_info->dynamicProps_group_counter && override)
796	>	reset_group_dynamicProps (args_info);
797	>	args_info->dynamicProps_group_counter += 1;
798	>
799	>	if (update_arg( 0 ,
800	>	0 , &(args_info->lcorr_given),
801	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
802	>	check_ambiguity, override, 0, 0,
803	>	"lcorr", 'l',
804	>	additional_error))
805	>	goto failure;
806	>
807	>	break;
808	>	case 'M':       /* System dipole correlation function.  */
809	>
810	>	if (args_info->dynamicProps_group_counter && override)
811	>	reset_group_dynamicProps (args_info);
812	>	args_info->dynamicProps_group_counter += 1;
813	>
814	>	if (update_arg( 0 ,
815	>	0 , &(args_info->sdcorr_given),
816	>	&(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
817	>	check_ambiguity, override, 0, 0,
818	>	"sdcorr", 'M',
819	>	additional_error))
820	>	goto failure;
821	>
822	>	break;
823	>	case 'p':       /* Helfand momentum for viscosity.  */
824	>
825	>	if (args_info->dynamicProps_group_counter && override)
826	>	reset_group_dynamicProps (args_info);
827	>	args_info->dynamicProps_group_counter += 1;
828	>
829	>	if (update_arg( 0 ,
830	>	0 , &(args_info->momentum_given),
831	>	&(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
832	>	check_ambiguity, override, 0, 0,
833	>	"momentum", 'p',
834	>	additional_error))
835	>	goto failure;
836	>
837	>	break;
838
839		case 0: /* Long option with no short option */
840		/* select first stuntdouble set.  */
841		if (strcmp (long_options[option_index].name, "sele1") == 0)
842		{
209	–	if (args_info->sele1_given)
210	–	{
211	–	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
212	–	clear_args ();
213	–	exit (EXIT_FAILURE);
214	–	}
215	–	args_info->sele1_given = 1;
216	–	args_info->sele1_arg = gengetopt_strdup (optarg);
217	–	break;
218	–	}
843
844	+
845	+	if (update_arg( (void *)&(args_info->sele1_arg),
846	+	&(args_info->sele1_orig), &(args_info->sele1_given),
847	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
848	+	check_ambiguity, override, 0, 0,
849	+	"sele1", '-',
850	+	additional_error))
851	+	goto failure;
852	+
853	+	}
854		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
855		else if (strcmp (long_options[option_index].name, "sele2") == 0)
856		{
223	–	if (args_info->sele2_given)
224	–	{
225	–	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
226	–	clear_args ();
227	–	exit (EXIT_FAILURE);
228	–	}
229	–	args_info->sele2_given = 1;
230	–	args_info->sele2_arg = gengetopt_strdup (optarg);
231	–	break;
232	–	}
857
858	+
859	+	if (update_arg( (void *)&(args_info->sele2_arg),
860	+	&(args_info->sele2_orig), &(args_info->sele2_given),
861	+	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
862	+	check_ambiguity, override, 0, 0,
863	+	"sele2", '-',
864	+	additional_error))
865	+	goto failure;
866	+
867	+	}
868		/* Lengendre Polynomial Order.  */
869		else if (strcmp (long_options[option_index].name, "order") == 0)
870		{
871	<	if (args_info->order_given)
872	<	{
873	<	fprintf (stderr, "%s: `--order' option given more than once\n", CMDLINE_PARSER_PACKAGE);
874	<	clear_args ();
875	<	exit (EXIT_FAILURE);
876	<	}
877	<	args_info->order_given = 1;
878	<	args_info->order_arg = strtol (optarg,&stop_char,0);
879	<	break;
871	>
872	>
873	>	if (update_arg( (void *)&(args_info->order_arg),
874	>	&(args_info->order_orig), &(args_info->order_given),
875	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
876	>	check_ambiguity, override, 0, 0,
877	>	"order", '-',
878	>	additional_error))
879	>	goto failure;
880	>
881		}
882	+	/* Lengendre correlation function binned by Z.  */
883	+	else if (strcmp (long_options[option_index].name, "lcorrZ") == 0)
884	+	{
885
886	<
886	>	if (args_info->dynamicProps_group_counter && override)
887	>	reset_group_dynamicProps (args_info);
888	>	args_info->dynamicProps_group_counter += 1;
889	>
890	>	if (update_arg( 0 ,
891	>	0 , &(args_info->lcorrZ_given),
892	>	&(local_args_info.lcorrZ_given), optarg, 0, 0, ARG_NO,
893	>	check_ambiguity, override, 0, 0,
894	>	"lcorrZ", '-',
895	>	additional_error))
896	>	goto failure;
897	>
898	>	}
899	>	/* Lengendre correlation function for OH bond vectors binned by Z.  */
900	>	else if (strcmp (long_options[option_index].name, "cohZ") == 0)
901	>	{
902	>
903	>	if (args_info->dynamicProps_group_counter && override)
904	>	reset_group_dynamicProps (args_info);
905	>	args_info->dynamicProps_group_counter += 1;
906	>
907	>	if (update_arg( 0 ,
908	>	0 , &(args_info->cohZ_given),
909	>	&(local_args_info.cohZ_given), optarg, 0, 0, ARG_NO,
910	>	check_ambiguity, override, 0, 0,
911	>	"cohZ", '-',
912	>	additional_error))
913	>	goto failure;
914	>
915	>	}
916	>	/* Radial rmsd.  */
917	>	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
918	>	{
919	>
920	>	if (args_info->dynamicProps_group_counter && override)
921	>	reset_group_dynamicProps (args_info);
922	>	args_info->dynamicProps_group_counter += 1;
923	>
924	>	if (update_arg( 0 ,
925	>	0 , &(args_info->r_rcorr_given),
926	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
927	>	check_ambiguity, override, 0, 0,
928	>	"r_rcorr", '-',
929	>	additional_error))
930	>	goto failure;
931	>
932	>	}
933	>	/* Angular rmsd.  */
934	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
935	>	{
936	>
937	>	if (args_info->dynamicProps_group_counter && override)
938	>	reset_group_dynamicProps (args_info);
939	>	args_info->dynamicProps_group_counter += 1;
940	>
941	>	if (update_arg( 0 ,
942	>	0 , &(args_info->thetacorr_given),
943	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
944	>	check_ambiguity, override, 0, 0,
945	>	"thetacorr", '-',
946	>	additional_error))
947	>	goto failure;
948	>
949	>	}
950	>	/* Directional rmsd for particles with unit vectors.  */
951	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
952	>	{
953	>
954	>	if (args_info->dynamicProps_group_counter && override)
955	>	reset_group_dynamicProps (args_info);
956	>	args_info->dynamicProps_group_counter += 1;
957	>
958	>	if (update_arg( 0 ,
959	>	0 , &(args_info->drcorr_given),
960	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
961	>	check_ambiguity, override, 0, 0,
962	>	"drcorr", '-',
963	>	additional_error))
964	>	goto failure;
965	>
966	>	}
967	>	/* Helfand moment for thermal conductvity.  */
968	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
969	>	{
970	>
971	>	if (args_info->dynamicProps_group_counter && override)
972	>	reset_group_dynamicProps (args_info);
973	>	args_info->dynamicProps_group_counter += 1;
974	>
975	>	if (update_arg( 0 ,
976	>	0 , &(args_info->helfandEcorr_given),
977	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
978	>	check_ambiguity, override, 0, 0,
979	>	"helfandEcorr", '-',
980	>	additional_error))
981	>	goto failure;
982	>
983	>	}
984	>	/* Stress tensor correlation function.  */
985	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
986	>	{
987	>
988	>	if (args_info->dynamicProps_group_counter && override)
989	>	reset_group_dynamicProps (args_info);
990	>	args_info->dynamicProps_group_counter += 1;
991	>
992	>	if (update_arg( 0 ,
993	>	0 , &(args_info->stresscorr_given),
994	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
995	>	check_ambiguity, override, 0, 0,
996	>	"stresscorr", '-',
997	>	additional_error))
998	>	goto failure;
999	>
1000	>	}
1001	>
1002	>	break;
1003		case '?':       /* Invalid option.  */
1004		/* `getopt_long' already printed an error message.  */
1005	<	exit (EXIT_FAILURE);
1005	>	goto failure;
1006
1007		default:        /* bug: option not considered.  */
1008	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
1008	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
1009		abort ();
1010		} /* switch */
1011		} /* while */
1012
1013	<	if ( dynamicProps_group_counter != 1)
1013	>	if (args_info->dynamicProps_group_counter > 1)
1014		{
1015	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
1016	<	missing_required_options = 1;
1015	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
1016	>	error = 1;
1017		}
1018
1019
1020	<	if (! args_info->input_given)
1020	>
1021	>	if (check_required)
1022		{
1023	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
269	<	missing_required_options = 1;
1023	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
1024		}
271	–	if ( missing_required_options )
272	–	exit (EXIT_FAILURE);
1025
1026	+	cmdline_parser_release (&local_args_info);
1027	+
1028	+	if ( error )
1029	+	return (EXIT_FAILURE);
1030	+
1031	+	if (optind < argc)
1032	+	{
1033	+	int i = 0 ;
1034	+	int found_prog_name = 0;
1035	+	/* whether program name, i.e., argv[0], is in the remaining args
1036	+	(this may happen with some implementations of getopt,
1037	+	but surely not with the one included by gengetopt) */
1038	+
1039	+	i = optind;
1040	+	while (i < argc)
1041	+	if (argv[i++] == argv[0]) {
1042	+	found_prog_name = 1;
1043	+	break;
1044	+	}
1045	+	i = 0;
1046	+
1047	+	args_info->inputs_num = argc - optind - found_prog_name;
1048	+	args_info->inputs =
1049	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
1050	+	while (optind < argc)
1051	+	if (argv[optind++] != argv[0])
1052	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
1053	+	}
1054	+
1055		return 0;
1056	+
1057	+	failure:
1058	+
1059	+	cmdline_parser_release (&local_args_info);
1060	+	return (EXIT_FAILURE);
1061		}

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords), Revision 876 by tim, Mon Jan 30 22:25:27 2006 UTC vs.
trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp (property svn:keywords), Revision 1934 by gezelter, Mon Aug 26 14:15:09 2013 UTC

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