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root/OpenMD/trunk/src/applications/dynamicProps/DynamicPropsCmd.cpp

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (file contents), Revision 916 by tim, Fri Mar 24 16:49:09 2006 UTC vs.
branches/development/src/applications/dynamicProps/DynamicPropsCmd.cpp (file contents), Revision 1655 by gezelter, Mon Oct 3 20:32:45 2011 UTC

#	Line 1 | Line 1
1		/*
2	<	File autogenerated by gengetopt version 2.11
2	>	File autogenerated by gengetopt version 2.22.4
3		generated with the following command:
4	<	/home/maul/gezelter/tim/program/gengetopt-2.11/src/gengetopt -F DynamicPropsCmd
4	>	gengetopt -F DynamicPropsCmd -u
5
6		The developers of gengetopt consider the fixed text that goes in all
7		gengetopt output files to be in the public domain:
8		we make no copyright claims on it.
9		*/
10
11	+	/* If we use autoconf.  */
12	+	#ifdef HAVE_CONFIG_H
13	+	#include "config.h"
14	+	#endif
15
16		#include <stdio.h>
17		#include <stdlib.h>
18		#include <string.h>
19
20	<	/* If we use autoconf.  */
21	<	#ifdef HAVE_CONFIG_H
18	<	#include "config.h"
20	>	#ifndef FIX_UNUSED
21	>	#define FIX_UNUSED(X) (void) (X) /* avoid warnings for unused params */
22		#endif
23
24	<	#include "getopt.h"
24	>	#include <getopt.h>
25
26		#include "DynamicPropsCmd.h"
27
28	+	const char *gengetopt_args_info_purpose = "";
29	+
30	+	const char *gengetopt_args_info_usage = "Usage: DynamicProps [OPTIONS]... [FILES]...";
31	+
32	+	const char *gengetopt_args_info_description = "";
33	+
34	+	const char *gengetopt_args_info_help[] = {
35	+	"  -h, --help                    Print help and exit",
36	+	"  -V, --version                 Print version and exit",
37	+	"  -i, --input=filename          input dump file",
38	+	"  -o, --output=filename         output file name",
39	+	"      --sele1=selection script  select first stuntdouble set",
40	+	"      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)",
41	+	"      --order=INT               Lengendre Polynomial Order",
42	+	"  -m, --memory=memory specification\n                                Available memory (defaults to 2G)  \n                                  (default=`2G')",
43	+	"\n Group: dynamicProps\n   an option of this group is required",
44	+	"  -r, --rcorr                   rmsd",
45	+	"  -v, --vcorr                   velocity correlation function",
46	+	"  -d, --dcorr                   dipole correlation function",
47	+	"  -l, --lcorr                   Lengendre correlation function",
48	+	"  -s, --sdcorr                  System dipole correlation function",
49	+	"      --r_rcorr                 Radial rmsd",
50	+	"      --thetacorr               Angular rmsd",
51	+	"      --drcorr                  Directional rmsd for particles with unit \n                                  vectors",
52	+	"      --helfandEcorr            Helfand moment for thermal conductvity",
53	+	"  -p, --momentum                Helfand momentum for viscosity",
54	+	"      --stresscorr              Stress tensor correlation function",
55	+	0
56	+	};
57	+
58	+	typedef enum {ARG_NO
59	+	, ARG_STRING
60	+	, ARG_INT
61	+	} cmdline_parser_arg_type;
62	+
63	+	static
64	+	void clear_given (struct gengetopt_args_info *args_info);
65	+	static
66	+	void clear_args (struct gengetopt_args_info *args_info);
67	+
68	+	static int
69	+	cmdline_parser_internal (int argc, char **argv, struct gengetopt_args_info *args_info,
70	+	struct cmdline_parser_params *params, const char *additional_error);
71	+
72	+	static int
73	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error);
74	+
75	+	static char *
76	+	gengetopt_strdup (const char *s);
77	+
78	+	static
79	+	void clear_given (struct gengetopt_args_info *args_info)
80	+	{
81	+	args_info->help_given = 0 ;
82	+	args_info->version_given = 0 ;
83	+	args_info->input_given = 0 ;
84	+	args_info->output_given = 0 ;
85	+	args_info->sele1_given = 0 ;
86	+	args_info->sele2_given = 0 ;
87	+	args_info->order_given = 0 ;
88	+	args_info->memory_given = 0 ;
89	+	args_info->rcorr_given = 0 ;
90	+	args_info->vcorr_given = 0 ;
91	+	args_info->dcorr_given = 0 ;
92	+	args_info->lcorr_given = 0 ;
93	+	args_info->sdcorr_given = 0 ;
94	+	args_info->r_rcorr_given = 0 ;
95	+	args_info->thetacorr_given = 0 ;
96	+	args_info->drcorr_given = 0 ;
97	+	args_info->helfandEcorr_given = 0 ;
98	+	args_info->momentum_given = 0 ;
99	+	args_info->stresscorr_given = 0 ;
100	+	args_info->dynamicProps_group_counter = 0 ;
101	+	}
102	+
103	+	static
104	+	void clear_args (struct gengetopt_args_info *args_info)
105	+	{
106	+	FIX_UNUSED (args_info);
107	+	args_info->input_arg = NULL;
108	+	args_info->input_orig = NULL;
109	+	args_info->output_arg = NULL;
110	+	args_info->output_orig = NULL;
111	+	args_info->sele1_arg = NULL;
112	+	args_info->sele1_orig = NULL;
113	+	args_info->sele2_arg = NULL;
114	+	args_info->sele2_orig = NULL;
115	+	args_info->order_orig = NULL;
116	+	args_info->memory_arg = gengetopt_strdup ("2G");
117	+	args_info->memory_orig = NULL;
118	+
119	+	}
120	+
121	+	static
122	+	void init_args_info(struct gengetopt_args_info *args_info)
123	+	{
124	+
125	+
126	+	args_info->help_help = gengetopt_args_info_help[0] ;
127	+	args_info->version_help = gengetopt_args_info_help[1] ;
128	+	args_info->input_help = gengetopt_args_info_help[2] ;
129	+	args_info->output_help = gengetopt_args_info_help[3] ;
130	+	args_info->sele1_help = gengetopt_args_info_help[4] ;
131	+	args_info->sele2_help = gengetopt_args_info_help[5] ;
132	+	args_info->order_help = gengetopt_args_info_help[6] ;
133	+	args_info->memory_help = gengetopt_args_info_help[7] ;
134	+	args_info->rcorr_help = gengetopt_args_info_help[9] ;
135	+	args_info->vcorr_help = gengetopt_args_info_help[10] ;
136	+	args_info->dcorr_help = gengetopt_args_info_help[11] ;
137	+	args_info->lcorr_help = gengetopt_args_info_help[12] ;
138	+	args_info->sdcorr_help = gengetopt_args_info_help[13] ;
139	+	args_info->r_rcorr_help = gengetopt_args_info_help[14] ;
140	+	args_info->thetacorr_help = gengetopt_args_info_help[15] ;
141	+	args_info->drcorr_help = gengetopt_args_info_help[16] ;
142	+	args_info->helfandEcorr_help = gengetopt_args_info_help[17] ;
143	+	args_info->momentum_help = gengetopt_args_info_help[18] ;
144	+	args_info->stresscorr_help = gengetopt_args_info_help[19] ;
145	+
146	+	}
147	+
148		void
149		cmdline_parser_print_version (void)
150		{
151	<	printf ("%s %s\n", CMDLINE_PARSER_PACKAGE, CMDLINE_PARSER_VERSION);
151	>	printf ("%s %s\n",
152	>	(strlen(CMDLINE_PARSER_PACKAGE_NAME) ? CMDLINE_PARSER_PACKAGE_NAME : CMDLINE_PARSER_PACKAGE),
153	>	CMDLINE_PARSER_VERSION);
154		}
155
156	+	static void print_help_common(void) {
157	+	cmdline_parser_print_version ();
158	+
159	+	if (strlen(gengetopt_args_info_purpose) > 0)
160	+	printf("\n%s\n", gengetopt_args_info_purpose);
161	+
162	+	if (strlen(gengetopt_args_info_usage) > 0)
163	+	printf("\n%s\n", gengetopt_args_info_usage);
164	+
165	+	printf("\n");
166	+
167	+	if (strlen(gengetopt_args_info_description) > 0)
168	+	printf("%s\n\n", gengetopt_args_info_description);
169	+	}
170	+
171		void
172		cmdline_parser_print_help (void)
173		{
174	<	cmdline_parser_print_version ();
175	<	printf("\n"
176	<	"Usage: %s [OPTIONS]...\n", CMDLINE_PARSER_PACKAGE);
177	<	printf("\n");
38	<	printf("  -h, --help                    Print help and exit\n");
39	<	printf("  -V, --version                 Print version and exit\n");
40	<	printf("  -i, --input=filename          input dump file\n");
41	<	printf("  -o, --output=filename         output file name\n");
42	<	printf("      --sele1=selection script  select first stuntdouble set\n");
43	<	printf("      --sele2=selection script  select second stuntdouble set (if sele2 is not \n                                  set, use script from sele1)\n");
44	<	printf("      --order=INT               Lengendre Polynomial Order\n");
45	<	printf("\n");
46	<	printf(" Group: dynamicProps  an option of this group is required\n");
47	<	printf("  -m, --rmsd                    rmsd\n");
48	<	printf("  -r, --rcorr                   position correlation function\n");
49	<	printf("  -v, --vcorr                   velocity correlation function\n");
50	<	printf("  -d, --dcorr                   dipole correlation function\n");
51	<	printf("  -l, --lcorr                   Lengendre correlation function\n");
174	>	int i = 0;
175	>	print_help_common();
176	>	while (gengetopt_args_info_help[i])
177	>	printf("%s\n", gengetopt_args_info_help[i++]);
178		}
179
180	+	void
181	+	cmdline_parser_init (struct gengetopt_args_info *args_info)
182	+	{
183	+	clear_given (args_info);
184	+	clear_args (args_info);
185	+	init_args_info (args_info);
186
187	<	static char *gengetopt_strdup (const char *s);
187	>	args_info->inputs = 0;
188	>	args_info->inputs_num = 0;
189	>	}
190
191	<	/* gengetopt_strdup() */
192	<	/* strdup.c replacement of strdup, which is not standard */
191	>	void
192	>	cmdline_parser_params_init(struct cmdline_parser_params *params)
193	>	{
194	>	if (params)
195	>	{
196	>	params->override = 0;
197	>	params->initialize = 1;
198	>	params->check_required = 1;
199	>	params->check_ambiguity = 0;
200	>	params->print_errors = 1;
201	>	}
202	>	}
203	>
204	>	struct cmdline_parser_params *
205	>	cmdline_parser_params_create(void)
206	>	{
207	>	struct cmdline_parser_params *params =
208	>	(struct cmdline_parser_params *)malloc(sizeof(struct cmdline_parser_params));
209	>	cmdline_parser_params_init(params);
210	>	return params;
211	>	}
212	>
213	>	static void
214	>	free_string_field (char **s)
215	>	{
216	>	if (*s)
217	>	{
218	>	free (*s);
219	>	*s = 0;
220	>	}
221	>	}
222	>
223	>
224	>	static void
225	>	cmdline_parser_release (struct gengetopt_args_info *args_info)
226	>	{
227	>	unsigned int i;
228	>	free_string_field (&(args_info->input_arg));
229	>	free_string_field (&(args_info->input_orig));
230	>	free_string_field (&(args_info->output_arg));
231	>	free_string_field (&(args_info->output_orig));
232	>	free_string_field (&(args_info->sele1_arg));
233	>	free_string_field (&(args_info->sele1_orig));
234	>	free_string_field (&(args_info->sele2_arg));
235	>	free_string_field (&(args_info->sele2_orig));
236	>	free_string_field (&(args_info->order_orig));
237	>	free_string_field (&(args_info->memory_arg));
238	>	free_string_field (&(args_info->memory_orig));
239	>
240	>
241	>	for (i = 0; i < args_info->inputs_num; ++i)
242	>	free (args_info->inputs [i]);
243	>
244	>	if (args_info->inputs_num)
245	>	free (args_info->inputs);
246	>
247	>	clear_given (args_info);
248	>	}
249	>
250	>
251	>	static void
252	>	write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
253	>	{
254	>	FIX_UNUSED (values);
255	>	if (arg) {
256	>	fprintf(outfile, "%s=\"%s\"\n", opt, arg);
257	>	} else {
258	>	fprintf(outfile, "%s\n", opt);
259	>	}
260	>	}
261	>
262	>
263	>	int
264	>	cmdline_parser_dump(FILE *outfile, struct gengetopt_args_info *args_info)
265	>	{
266	>	int i = 0;
267	>
268	>	if (!outfile)
269	>	{
270	>	fprintf (stderr, "%s: cannot dump options to stream\n", CMDLINE_PARSER_PACKAGE);
271	>	return EXIT_FAILURE;
272	>	}
273	>
274	>	if (args_info->help_given)
275	>	write_into_file(outfile, "help", 0, 0 );
276	>	if (args_info->version_given)
277	>	write_into_file(outfile, "version", 0, 0 );
278	>	if (args_info->input_given)
279	>	write_into_file(outfile, "input", args_info->input_orig, 0);
280	>	if (args_info->output_given)
281	>	write_into_file(outfile, "output", args_info->output_orig, 0);
282	>	if (args_info->sele1_given)
283	>	write_into_file(outfile, "sele1", args_info->sele1_orig, 0);
284	>	if (args_info->sele2_given)
285	>	write_into_file(outfile, "sele2", args_info->sele2_orig, 0);
286	>	if (args_info->order_given)
287	>	write_into_file(outfile, "order", args_info->order_orig, 0);
288	>	if (args_info->memory_given)
289	>	write_into_file(outfile, "memory", args_info->memory_orig, 0);
290	>	if (args_info->rcorr_given)
291	>	write_into_file(outfile, "rcorr", 0, 0 );
292	>	if (args_info->vcorr_given)
293	>	write_into_file(outfile, "vcorr", 0, 0 );
294	>	if (args_info->dcorr_given)
295	>	write_into_file(outfile, "dcorr", 0, 0 );
296	>	if (args_info->lcorr_given)
297	>	write_into_file(outfile, "lcorr", 0, 0 );
298	>	if (args_info->sdcorr_given)
299	>	write_into_file(outfile, "sdcorr", 0, 0 );
300	>	if (args_info->r_rcorr_given)
301	>	write_into_file(outfile, "r_rcorr", 0, 0 );
302	>	if (args_info->thetacorr_given)
303	>	write_into_file(outfile, "thetacorr", 0, 0 );
304	>	if (args_info->drcorr_given)
305	>	write_into_file(outfile, "drcorr", 0, 0 );
306	>	if (args_info->helfandEcorr_given)
307	>	write_into_file(outfile, "helfandEcorr", 0, 0 );
308	>	if (args_info->momentum_given)
309	>	write_into_file(outfile, "momentum", 0, 0 );
310	>	if (args_info->stresscorr_given)
311	>	write_into_file(outfile, "stresscorr", 0, 0 );
312	>
313	>
314	>	i = EXIT_SUCCESS;
315	>	return i;
316	>	}
317	>
318	>	int
319	>	cmdline_parser_file_save(const char *filename, struct gengetopt_args_info *args_info)
320	>	{
321	>	FILE *outfile;
322	>	int i = 0;
323	>
324	>	outfile = fopen(filename, "w");
325	>
326	>	if (!outfile)
327	>	{
328	>	fprintf (stderr, "%s: cannot open file for writing: %s\n", CMDLINE_PARSER_PACKAGE, filename);
329	>	return EXIT_FAILURE;
330	>	}
331	>
332	>	i = cmdline_parser_dump(outfile, args_info);
333	>	fclose (outfile);
334	>
335	>	return i;
336	>	}
337	>
338	>	void
339	>	cmdline_parser_free (struct gengetopt_args_info *args_info)
340	>	{
341	>	cmdline_parser_release (args_info);
342	>	}
343	>
344	>	/** @brief replacement of strdup, which is not standard */
345		char *
346		gengetopt_strdup (const char *s)
347		{
348	<	char *result = (char*)malloc(strlen(s) + 1);
348	>	char *result = 0;
349	>	if (!s)
350	>	return result;
351	>
352	>	result = (char*)malloc(strlen(s) + 1);
353		if (result == (char*)0)
354		return (char*)0;
355		strcpy(result, s);
356		return result;
357		}
358
359	<	int
360	<	cmdline_parser (int argc, char * const *argv, struct gengetopt_args_info *args_info)
359	>	static void
360	>	reset_group_dynamicProps(struct gengetopt_args_info *args_info)
361		{
362	<	int c;        /* Character of the parsed option.  */
363	<	int missing_required_options = 0;
74	<	int dynamicProps_group_counter = 0;
362	>	if (! args_info->dynamicProps_group_counter)
363	>	return;
364
76	–
77	–	args_info->help_given = 0 ;
78	–	args_info->version_given = 0 ;
79	–	args_info->input_given = 0 ;
80	–	args_info->output_given = 0 ;
81	–	args_info->sele1_given = 0 ;
82	–	args_info->sele2_given = 0 ;
83	–	args_info->order_given = 0 ;
84	–	args_info->rmsd_given = 0 ;
365		args_info->rcorr_given = 0 ;
366		args_info->vcorr_given = 0 ;
367		args_info->dcorr_given = 0 ;
368		args_info->lcorr_given = 0 ;
369	<	#define clear_args() { \
370	<	args_info->input_arg = NULL; \
371	<	args_info->output_arg = NULL; \
372	<	args_info->sele1_arg = NULL; \
373	<	args_info->sele2_arg = NULL; \
369	>	args_info->sdcorr_given = 0 ;
370	>	args_info->r_rcorr_given = 0 ;
371	>	args_info->thetacorr_given = 0 ;
372	>	args_info->drcorr_given = 0 ;
373	>	args_info->helfandEcorr_given = 0 ;
374	>	args_info->momentum_given = 0 ;
375	>	args_info->stresscorr_given = 0 ;
376	>
377	>	args_info->dynamicProps_group_counter = 0;
378		}
379
380	<	clear_args();
380	>	int
381	>	cmdline_parser (int argc, char **argv, struct gengetopt_args_info *args_info)
382	>	{
383	>	return cmdline_parser2 (argc, argv, args_info, 0, 1, 1);
384	>	}
385
386	+	int
387	+	cmdline_parser_ext (int argc, char **argv, struct gengetopt_args_info *args_info,
388	+	struct cmdline_parser_params *params)
389	+	{
390	+	int result;
391	+	result = cmdline_parser_internal (argc, argv, args_info, params, 0);
392	+
393	+	if (result == EXIT_FAILURE)
394	+	{
395	+	cmdline_parser_free (args_info);
396	+	exit (EXIT_FAILURE);
397	+	}
398	+
399	+	return result;
400	+	}
401	+
402	+	int
403	+	cmdline_parser2 (int argc, char **argv, struct gengetopt_args_info *args_info, int override, int initialize, int check_required)
404	+	{
405	+	int result;
406	+	struct cmdline_parser_params params;
407	+
408	+	params.override = override;
409	+	params.initialize = initialize;
410	+	params.check_required = check_required;
411	+	params.check_ambiguity = 0;
412	+	params.print_errors = 1;
413	+
414	+	result = cmdline_parser_internal (argc, argv, args_info, &params, 0);
415	+
416	+	if (result == EXIT_FAILURE)
417	+	{
418	+	cmdline_parser_free (args_info);
419	+	exit (EXIT_FAILURE);
420	+	}
421	+
422	+	return result;
423	+	}
424	+
425	+	int
426	+	cmdline_parser_required (struct gengetopt_args_info *args_info, const char *prog_name)
427	+	{
428	+	int result = EXIT_SUCCESS;
429	+
430	+	if (cmdline_parser_required2(args_info, prog_name, 0) > 0)
431	+	result = EXIT_FAILURE;
432	+
433	+	if (result == EXIT_FAILURE)
434	+	{
435	+	cmdline_parser_free (args_info);
436	+	exit (EXIT_FAILURE);
437	+	}
438	+
439	+	return result;
440	+	}
441	+
442	+	int
443	+	cmdline_parser_required2 (struct gengetopt_args_info *args_info, const char *prog_name, const char *additional_error)
444	+	{
445	+	int error = 0;
446	+	FIX_UNUSED (additional_error);
447	+
448	+	/* checks for required options */
449	+	if (! args_info->input_given)
450	+	{
451	+	fprintf (stderr, "%s: '--input' ('-i') option required%s\n", prog_name, (additional_error ? additional_error : ""));
452	+	error = 1;
453	+	}
454	+
455	+	if (args_info->dynamicProps_group_counter == 0)
456	+	{
457	+	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", prog_name, args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
458	+	error = 1;
459	+	}
460	+
461	+
462	+	/* checks for dependences among options */
463	+
464	+	return error;
465	+	}
466	+
467	+
468	+	static char *package_name = 0;
469	+
470	+	/**
471	+	* @brief updates an option
472	+	* @param field the generic pointer to the field to update
473	+	* @param orig_field the pointer to the orig field
474	+	* @param field_given the pointer to the number of occurrence of this option
475	+	* @param prev_given the pointer to the number of occurrence already seen
476	+	* @param value the argument for this option (if null no arg was specified)
477	+	* @param possible_values the possible values for this option (if specified)
478	+	* @param default_value the default value (in case the option only accepts fixed values)
479	+	* @param arg_type the type of this option
480	+	* @param check_ambiguity @see cmdline_parser_params.check_ambiguity
481	+	* @param override @see cmdline_parser_params.override
482	+	* @param no_free whether to free a possible previous value
483	+	* @param multiple_option whether this is a multiple option
484	+	* @param long_opt the corresponding long option
485	+	* @param short_opt the corresponding short option (or '-' if none)
486	+	* @param additional_error possible further error specification
487	+	*/
488	+	static
489	+	int update_arg(void *field, char **orig_field,
490	+	unsigned int *field_given, unsigned int *prev_given,
491	+	char *value, const char *possible_values[],
492	+	const char *default_value,
493	+	cmdline_parser_arg_type arg_type,
494	+	int check_ambiguity, int override,
495	+	int no_free, int multiple_option,
496	+	const char *long_opt, char short_opt,
497	+	const char *additional_error)
498	+	{
499	+	char *stop_char = 0;
500	+	const char *val = value;
501	+	int found;
502	+	char **string_field;
503	+	FIX_UNUSED (field);
504	+
505	+	stop_char = 0;
506	+	found = 0;
507	+
508	+	if (!multiple_option && prev_given && (*prev_given || (check_ambiguity && *field_given)))
509	+	{
510	+	if (short_opt != '-')
511	+	fprintf (stderr, "%s: `--%s' (`-%c') option given more than once%s\n",
512	+	package_name, long_opt, short_opt,
513	+	(additional_error ? additional_error : ""));
514	+	else
515	+	fprintf (stderr, "%s: `--%s' option given more than once%s\n",
516	+	package_name, long_opt,
517	+	(additional_error ? additional_error : ""));
518	+	return 1; /* failure */
519	+	}
520	+
521	+	FIX_UNUSED (default_value);
522	+
523	+	if (field_given && *field_given && ! override)
524	+	return 0;
525	+	if (prev_given)
526	+	(*prev_given)++;
527	+	if (field_given)
528	+	(*field_given)++;
529	+	if (possible_values)
530	+	val = possible_values[found];
531	+
532	+	switch(arg_type) {
533	+	case ARG_INT:
534	+	if (val) *((int *)field) = strtol (val, &stop_char, 0);
535	+	break;
536	+	case ARG_STRING:
537	+	if (val) {
538	+	string_field = (char **)field;
539	+	if (!no_free && *string_field)
540	+	free (*string_field); /* free previous string */
541	+	*string_field = gengetopt_strdup (val);
542	+	}
543	+	break;
544	+	default:
545	+	break;
546	+	};
547	+
548	+	/* check numeric conversion */
549	+	switch(arg_type) {
550	+	case ARG_INT:
551	+	if (val && !(stop_char && *stop_char == '\0')) {
552	+	fprintf(stderr, "%s: invalid numeric value: %s\n", package_name, val);
553	+	return 1; /* failure */
554	+	}
555	+	break;
556	+	default:
557	+	;
558	+	};
559	+
560	+	/* store the original value */
561	+	switch(arg_type) {
562	+	case ARG_NO:
563	+	break;
564	+	default:
565	+	if (value && orig_field) {
566	+	if (no_free) {
567	+	*orig_field = value;
568	+	} else {
569	+	if (*orig_field)
570	+	free (*orig_field); /* free previous string */
571	+	*orig_field = gengetopt_strdup (value);
572	+	}
573	+	}
574	+	};
575	+
576	+	return 0; /* OK */
577	+	}
578	+
579	+
580	+	int
581	+	cmdline_parser_internal (
582	+	int argc, char **argv, struct gengetopt_args_info *args_info,
583	+	struct cmdline_parser_params *params, const char *additional_error)
584	+	{
585	+	int c;        /* Character of the parsed option.  */
586	+
587	+	int error = 0;
588	+	struct gengetopt_args_info local_args_info;
589	+
590	+	int override;
591	+	int initialize;
592	+	int check_required;
593	+	int check_ambiguity;
594	+
595	+	package_name = argv[0];
596	+
597	+	override = params->override;
598	+	initialize = params->initialize;
599	+	check_required = params->check_required;
600	+	check_ambiguity = params->check_ambiguity;
601	+
602	+	if (initialize)
603	+	cmdline_parser_init (args_info);
604	+
605	+	cmdline_parser_init (&local_args_info);
606	+
607		optarg = 0;
608	<	optind = 1;
609	<	opterr = 1;
608	>	optind = 0;
609	>	opterr = params->print_errors;
610		optopt = '?';
611
612		while (1)
613		{
614		int option_index = 0;
106	–	char *stop_char;
615
616		static struct option long_options[] = {
617		{ "help",       0, NULL, 'h' },
#	Line 113 | Line 621 | cmdline_parser (int argc, char * const *argv, struct g
621		{ "sele1",      1, NULL, 0 },
622		{ "sele2",      1, NULL, 0 },
623		{ "order",      1, NULL, 0 },
624	<	{ "rmsd",       0, NULL, 'm' },
624	>	{ "memory",     1, NULL, 'm' },
625		{ "rcorr",      0, NULL, 'r' },
626		{ "vcorr",      0, NULL, 'v' },
627		{ "dcorr",      0, NULL, 'd' },
628		{ "lcorr",      0, NULL, 'l' },
629	<	{ NULL, 0, NULL, 0 }
629	>	{ "sdcorr",     0, NULL, 's' },
630	>	{ "r_rcorr",    0, NULL, 0 },
631	>	{ "thetacorr",  0, NULL, 0 },
632	>	{ "drcorr",     0, NULL, 0 },
633	>	{ "helfandEcorr",       0, NULL, 0 },
634	>	{ "momentum",   0, NULL, 'p' },
635	>	{ "stresscorr", 0, NULL, 0 },
636	>	{ 0,  0, 0, 0 }
637		};
638
639	<	stop_char = 0;
125	<	c = getopt_long (argc, argv, "hVi:o:mrvdl", long_options, &option_index);
639	>	c = getopt_long (argc, argv, "hVi:o:m:rvdlsp", long_options, &option_index);
640
641		if (c == -1) break;       /* Exit from `while (1)' loop.  */
642
643		switch (c)
644		{
645		case 'h':       /* Print help and exit.  */
132	–	clear_args ();
646		cmdline_parser_print_help ();
647	+	cmdline_parser_free (&local_args_info);
648		exit (EXIT_SUCCESS);
649
650		case 'V':       /* Print version and exit.  */
137	–	clear_args ();
651		cmdline_parser_print_version ();
652	+	cmdline_parser_free (&local_args_info);
653		exit (EXIT_SUCCESS);
654
655		case 'i':       /* input dump file.  */
656	<	if (args_info->input_given)
657	<	{
658	<	fprintf (stderr, "%s: `--input' (`-i') option given more than once\n", CMDLINE_PARSER_PACKAGE);
659	<	clear_args ();
660	<	exit (EXIT_FAILURE);
661	<	}
662	<	args_info->input_given = 1;
663	<	args_info->input_arg = gengetopt_strdup (optarg);
656	>
657	>
658	>	if (update_arg( (void *)&(args_info->input_arg),
659	>	&(args_info->input_orig), &(args_info->input_given),
660	>	&(local_args_info.input_given), optarg, 0, 0, ARG_STRING,
661	>	check_ambiguity, override, 0, 0,
662	>	"input", 'i',
663	>	additional_error))
664	>	goto failure;
665	>
666		break;
151	–
667		case 'o':       /* output file name.  */
668	<	if (args_info->output_given)
669	<	{
670	<	fprintf (stderr, "%s: `--output' (`-o') option given more than once\n", CMDLINE_PARSER_PACKAGE);
671	<	clear_args ();
672	<	exit (EXIT_FAILURE);
673	<	}
674	<	args_info->output_given = 1;
675	<	args_info->output_arg = gengetopt_strdup (optarg);
668	>
669	>
670	>	if (update_arg( (void *)&(args_info->output_arg),
671	>	&(args_info->output_orig), &(args_info->output_given),
672	>	&(local_args_info.output_given), optarg, 0, 0, ARG_STRING,
673	>	check_ambiguity, override, 0, 0,
674	>	"output", 'o',
675	>	additional_error))
676	>	goto failure;
677	>
678		break;
679	<
680	<	case 'm':       /* rmsd.  */
681	<	if (args_info->rmsd_given)
682	<	{
683	<	fprintf (stderr, "%s: `--rmsd' (`-m') option given more than once\n", CMDLINE_PARSER_PACKAGE);
684	<	clear_args ();
685	<	exit (EXIT_FAILURE);
686	<	}
687	<	args_info->rmsd_given = 1;
688	<	dynamicProps_group_counter += 1;
689	<	break;
690	<
691	<	case 'r':       /* position correlation function.  */
692	<	if (args_info->rcorr_given)
693	<	{
694	<	fprintf (stderr, "%s: `--rcorr' (`-r') option given more than once\n", CMDLINE_PARSER_PACKAGE);
695	<	clear_args ();
696	<	exit (EXIT_FAILURE);
697	<	}
698	<	args_info->rcorr_given = 1;
699	<	dynamicProps_group_counter += 1;
700	<	break;
701	<
679	>	case 'm':       /* Available memory (defaults to 2G).  */
680	>
681	>
682	>	if (update_arg( (void *)&(args_info->memory_arg),
683	>	&(args_info->memory_orig), &(args_info->memory_given),
684	>	&(local_args_info.memory_given), optarg, 0, "2G", ARG_STRING,
685	>	check_ambiguity, override, 0, 0,
686	>	"memory", 'm',
687	>	additional_error))
688	>	goto failure;
689	>
690	>	break;
691	>	case 'r':       /* rmsd.  */
692	>
693	>	if (args_info->dynamicProps_group_counter && override)
694	>	reset_group_dynamicProps (args_info);
695	>	args_info->dynamicProps_group_counter += 1;
696	>
697	>	if (update_arg( 0 ,
698	>	0 , &(args_info->rcorr_given),
699	>	&(local_args_info.rcorr_given), optarg, 0, 0, ARG_NO,
700	>	check_ambiguity, override, 0, 0,
701	>	"rcorr", 'r',
702	>	additional_error))
703	>	goto failure;
704	>
705	>	break;
706		case 'v':       /* velocity correlation function.  */
707	<	if (args_info->vcorr_given)
708	<	{
709	<	fprintf (stderr, "%s: `--vcorr' (`-v') option given more than once\n", CMDLINE_PARSER_PACKAGE);
710	<	clear_args ();
711	<	exit (EXIT_FAILURE);
712	<	}
713	<	args_info->vcorr_given = 1;
714	<	dynamicProps_group_counter += 1;
715	<	break;
716	<
707	>
708	>	if (args_info->dynamicProps_group_counter && override)
709	>	reset_group_dynamicProps (args_info);
710	>	args_info->dynamicProps_group_counter += 1;
711	>
712	>	if (update_arg( 0 ,
713	>	0 , &(args_info->vcorr_given),
714	>	&(local_args_info.vcorr_given), optarg, 0, 0, ARG_NO,
715	>	check_ambiguity, override, 0, 0,
716	>	"vcorr", 'v',
717	>	additional_error))
718	>	goto failure;
719	>
720	>	break;
721		case 'd':       /* dipole correlation function.  */
722	<	if (args_info->dcorr_given)
723	<	{
724	<	fprintf (stderr, "%s: `--dcorr' (`-d') option given more than once\n", CMDLINE_PARSER_PACKAGE);
725	<	clear_args ();
726	<	exit (EXIT_FAILURE);
727	<	}
728	<	args_info->dcorr_given = 1;
729	<	dynamicProps_group_counter += 1;
730	<	break;
731	<
722	>
723	>	if (args_info->dynamicProps_group_counter && override)
724	>	reset_group_dynamicProps (args_info);
725	>	args_info->dynamicProps_group_counter += 1;
726	>
727	>	if (update_arg( 0 ,
728	>	0 , &(args_info->dcorr_given),
729	>	&(local_args_info.dcorr_given), optarg, 0, 0, ARG_NO,
730	>	check_ambiguity, override, 0, 0,
731	>	"dcorr", 'd',
732	>	additional_error))
733	>	goto failure;
734	>
735	>	break;
736		case 'l':       /* Lengendre correlation function.  */
737	<	if (args_info->lcorr_given)
738	<	{
739	<	fprintf (stderr, "%s: `--lcorr' (`-l') option given more than once\n", CMDLINE_PARSER_PACKAGE);
740	<	clear_args ();
741	<	exit (EXIT_FAILURE);
742	<	}
743	<	args_info->lcorr_given = 1;
744	<	dynamicProps_group_counter += 1;
745	<	break;
746	<
737	>
738	>	if (args_info->dynamicProps_group_counter && override)
739	>	reset_group_dynamicProps (args_info);
740	>	args_info->dynamicProps_group_counter += 1;
741	>
742	>	if (update_arg( 0 ,
743	>	0 , &(args_info->lcorr_given),
744	>	&(local_args_info.lcorr_given), optarg, 0, 0, ARG_NO,
745	>	check_ambiguity, override, 0, 0,
746	>	"lcorr", 'l',
747	>	additional_error))
748	>	goto failure;
749	>
750	>	break;
751	>	case 's':       /* System dipole correlation function.  */
752	>
753	>	if (args_info->dynamicProps_group_counter && override)
754	>	reset_group_dynamicProps (args_info);
755	>	args_info->dynamicProps_group_counter += 1;
756	>
757	>	if (update_arg( 0 ,
758	>	0 , &(args_info->sdcorr_given),
759	>	&(local_args_info.sdcorr_given), optarg, 0, 0, ARG_NO,
760	>	check_ambiguity, override, 0, 0,
761	>	"sdcorr", 's',
762	>	additional_error))
763	>	goto failure;
764	>
765	>	break;
766	>	case 'p':       /* Helfand momentum for viscosity.  */
767	>
768	>	if (args_info->dynamicProps_group_counter && override)
769	>	reset_group_dynamicProps (args_info);
770	>	args_info->dynamicProps_group_counter += 1;
771	>
772	>	if (update_arg( 0 ,
773	>	0 , &(args_info->momentum_given),
774	>	&(local_args_info.momentum_given), optarg, 0, 0, ARG_NO,
775	>	check_ambiguity, override, 0, 0,
776	>	"momentum", 'p',
777	>	additional_error))
778	>	goto failure;
779	>
780	>	break;
781
782		case 0: /* Long option with no short option */
783		/* select first stuntdouble set.  */
784		if (strcmp (long_options[option_index].name, "sele1") == 0)
785		{
223	–	if (args_info->sele1_given)
224	–	{
225	–	fprintf (stderr, "%s: `--sele1' option given more than once\n", CMDLINE_PARSER_PACKAGE);
226	–	clear_args ();
227	–	exit (EXIT_FAILURE);
228	–	}
229	–	args_info->sele1_given = 1;
230	–	args_info->sele1_arg = gengetopt_strdup (optarg);
231	–	break;
232	–	}
786
787	+
788	+	if (update_arg( (void *)&(args_info->sele1_arg),
789	+	&(args_info->sele1_orig), &(args_info->sele1_given),
790	+	&(local_args_info.sele1_given), optarg, 0, 0, ARG_STRING,
791	+	check_ambiguity, override, 0, 0,
792	+	"sele1", '-',
793	+	additional_error))
794	+	goto failure;
795	+
796	+	}
797		/* select second stuntdouble set (if sele2 is not set, use script from sele1).  */
798		else if (strcmp (long_options[option_index].name, "sele2") == 0)
799		{
237	–	if (args_info->sele2_given)
238	–	{
239	–	fprintf (stderr, "%s: `--sele2' option given more than once\n", CMDLINE_PARSER_PACKAGE);
240	–	clear_args ();
241	–	exit (EXIT_FAILURE);
242	–	}
243	–	args_info->sele2_given = 1;
244	–	args_info->sele2_arg = gengetopt_strdup (optarg);
245	–	break;
246	–	}
800
801	+
802	+	if (update_arg( (void *)&(args_info->sele2_arg),
803	+	&(args_info->sele2_orig), &(args_info->sele2_given),
804	+	&(local_args_info.sele2_given), optarg, 0, 0, ARG_STRING,
805	+	check_ambiguity, override, 0, 0,
806	+	"sele2", '-',
807	+	additional_error))
808	+	goto failure;
809	+
810	+	}
811		/* Lengendre Polynomial Order.  */
812		else if (strcmp (long_options[option_index].name, "order") == 0)
813		{
814	<	if (args_info->order_given)
815	<	{
816	<	fprintf (stderr, "%s: `--order' option given more than once\n", CMDLINE_PARSER_PACKAGE);
817	<	clear_args ();
818	<	exit (EXIT_FAILURE);
819	<	}
820	<	args_info->order_given = 1;
821	<	args_info->order_arg = strtol (optarg,&stop_char,0);
822	<	break;
814	>
815	>
816	>	if (update_arg( (void *)&(args_info->order_arg),
817	>	&(args_info->order_orig), &(args_info->order_given),
818	>	&(local_args_info.order_given), optarg, 0, 0, ARG_INT,
819	>	check_ambiguity, override, 0, 0,
820	>	"order", '-',
821	>	additional_error))
822	>	goto failure;
823	>
824		}
825	+	/* Radial rmsd.  */
826	+	else if (strcmp (long_options[option_index].name, "r_rcorr") == 0)
827	+	{
828
829	<
829	>	if (args_info->dynamicProps_group_counter && override)
830	>	reset_group_dynamicProps (args_info);
831	>	args_info->dynamicProps_group_counter += 1;
832	>
833	>	if (update_arg( 0 ,
834	>	0 , &(args_info->r_rcorr_given),
835	>	&(local_args_info.r_rcorr_given), optarg, 0, 0, ARG_NO,
836	>	check_ambiguity, override, 0, 0,
837	>	"r_rcorr", '-',
838	>	additional_error))
839	>	goto failure;
840	>
841	>	}
842	>	/* Angular rmsd.  */
843	>	else if (strcmp (long_options[option_index].name, "thetacorr") == 0)
844	>	{
845	>
846	>	if (args_info->dynamicProps_group_counter && override)
847	>	reset_group_dynamicProps (args_info);
848	>	args_info->dynamicProps_group_counter += 1;
849	>
850	>	if (update_arg( 0 ,
851	>	0 , &(args_info->thetacorr_given),
852	>	&(local_args_info.thetacorr_given), optarg, 0, 0, ARG_NO,
853	>	check_ambiguity, override, 0, 0,
854	>	"thetacorr", '-',
855	>	additional_error))
856	>	goto failure;
857	>
858	>	}
859	>	/* Directional rmsd for particles with unit vectors.  */
860	>	else if (strcmp (long_options[option_index].name, "drcorr") == 0)
861	>	{
862	>
863	>	if (args_info->dynamicProps_group_counter && override)
864	>	reset_group_dynamicProps (args_info);
865	>	args_info->dynamicProps_group_counter += 1;
866	>
867	>	if (update_arg( 0 ,
868	>	0 , &(args_info->drcorr_given),
869	>	&(local_args_info.drcorr_given), optarg, 0, 0, ARG_NO,
870	>	check_ambiguity, override, 0, 0,
871	>	"drcorr", '-',
872	>	additional_error))
873	>	goto failure;
874	>
875	>	}
876	>	/* Helfand moment for thermal conductvity.  */
877	>	else if (strcmp (long_options[option_index].name, "helfandEcorr") == 0)
878	>	{
879	>
880	>	if (args_info->dynamicProps_group_counter && override)
881	>	reset_group_dynamicProps (args_info);
882	>	args_info->dynamicProps_group_counter += 1;
883	>
884	>	if (update_arg( 0 ,
885	>	0 , &(args_info->helfandEcorr_given),
886	>	&(local_args_info.helfandEcorr_given), optarg, 0, 0, ARG_NO,
887	>	check_ambiguity, override, 0, 0,
888	>	"helfandEcorr", '-',
889	>	additional_error))
890	>	goto failure;
891	>
892	>	}
893	>	/* Stress tensor correlation function.  */
894	>	else if (strcmp (long_options[option_index].name, "stresscorr") == 0)
895	>	{
896	>
897	>	if (args_info->dynamicProps_group_counter && override)
898	>	reset_group_dynamicProps (args_info);
899	>	args_info->dynamicProps_group_counter += 1;
900	>
901	>	if (update_arg( 0 ,
902	>	0 , &(args_info->stresscorr_given),
903	>	&(local_args_info.stresscorr_given), optarg, 0, 0, ARG_NO,
904	>	check_ambiguity, override, 0, 0,
905	>	"stresscorr", '-',
906	>	additional_error))
907	>	goto failure;
908	>
909	>	}
910	>
911	>	break;
912		case '?':       /* Invalid option.  */
913		/* `getopt_long' already printed an error message.  */
914	<	exit (EXIT_FAILURE);
914	>	goto failure;
915
916		default:        /* bug: option not considered.  */
917	<	fprintf (stderr, "%s: option unknown: %c\n", CMDLINE_PARSER_PACKAGE, c);
917	>	fprintf (stderr, "%s: option unknown: %c%s\n", CMDLINE_PARSER_PACKAGE, c, (additional_error ? additional_error : ""));
918		abort ();
919		} /* switch */
920		} /* while */
921
922	<	if ( dynamicProps_group_counter != 1)
922	>	if (args_info->dynamicProps_group_counter > 1)
923		{
924	<	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required\n", CMDLINE_PARSER_PACKAGE, dynamicProps_group_counter);
925	<	missing_required_options = 1;
924	>	fprintf (stderr, "%s: %d options of group dynamicProps were given. One is required%s.\n", argv[0], args_info->dynamicProps_group_counter, (additional_error ? additional_error : ""));
925	>	error = 1;
926		}
927
928
929	<	if (! args_info->input_given)
929	>
930	>	if (check_required)
931		{
932	<	fprintf (stderr, "%s: '--input' ('-i') option required\n", CMDLINE_PARSER_PACKAGE);
283	<	missing_required_options = 1;
932	>	error += cmdline_parser_required2 (args_info, argv[0], additional_error);
933		}
285	–	if ( missing_required_options )
286	–	exit (EXIT_FAILURE);
934
935	+	cmdline_parser_release (&local_args_info);
936	+
937	+	if ( error )
938	+	return (EXIT_FAILURE);
939	+
940	+	if (optind < argc)
941	+	{
942	+	int i = 0 ;
943	+	int found_prog_name = 0;
944	+	/* whether program name, i.e., argv[0], is in the remaining args
945	+	(this may happen with some implementations of getopt,
946	+	but surely not with the one included by gengetopt) */
947	+
948	+	i = optind;
949	+	while (i < argc)
950	+	if (argv[i++] == argv[0]) {
951	+	found_prog_name = 1;
952	+	break;
953	+	}
954	+	i = 0;
955	+
956	+	args_info->inputs_num = argc - optind - found_prog_name;
957	+	args_info->inputs =
958	+	(char **)(malloc ((args_info->inputs_num)*sizeof(char *))) ;
959	+	while (optind < argc)
960	+	if (argv[optind++] != argv[0])
961	+	args_info->inputs[ i++ ] = gengetopt_strdup (argv[optind-1]) ;
962	+	}
963	+
964		return 0;
965	+
966	+	failure:
967	+
968	+	cmdline_parser_release (&local_args_info);
969	+	return (EXIT_FAILURE);
970		}

Comparing:
trunk/src/applications/dynamicProps/DynamicPropsCmd.c (property svn:keywords), Revision 916 by tim, Fri Mar 24 16:49:09 2006 UTC vs.
branches/development/src/applications/dynamicProps/DynamicPropsCmd.cpp (property svn:keywords), Revision 1655 by gezelter, Mon Oct 3 20:32:45 2011 UTC

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